Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Reverse (-)

14773935 .. 14775277

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCTGAAGAGAGGCACCACCGTGGCCTCTTCCACCACAAGAAGGATGAAGACAGACCCATTGAAACCTCAGACTACCCTCAGTCTGGTTACTCTGATGAAGGACGTCCCGGCGGCGTTGGTGGCTATGGCGTCACTGCCACTCATGAATCTGAAATTGACTACAAGAAGGAGGAGAAGCACCACAAGCATCTTGAGCACCTAGGCGAGGCCGGGGTTGCTGCTGGTGGTGTTTTTGCCCTGCATGAGAAGCACAAGGAAAGAAAGACCCAGAGCATGCCCACAGGCACAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

99

Amino Acids

11.03

Weight (kDa)

6.4

Isoelectric Point (pI)

58.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	15
AciI	CCGC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	2 cut(s)	106, 132
AfiI	CCNNNNNNNGG	3 cut(s)	43, 86, 208
AgsI	TTSAA	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	25, 210
ApeKI	GCWGC	1 cut(s)	221
AspA2I	CCTAGG	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	111, 214
AvrII	CCTAGG	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	111, 214
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	115, 222
BlnI	CCTAGG	1 cut(s)	202
BlsI	GCNGC	2 cut(s)	116, 223
Bme1390I	CCNGG	2 cut(s)	111, 214
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	111, 214
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	111, 214
BsaHI	GRCGYC	2 cut(s)	106, 132
BsaJI	CCNNGG	3 cut(s)	22, 202, 213
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 86, 208
BseDI	CCNNGG	3 cut(s)	22, 202, 213
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	3 cut(s)	43, 86, 208
BseMII	CTCAG	2 cut(s)	84, 95
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	2 cut(s)	27, 212
BshNI	GGYRCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	111, 213
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	43, 86, 208
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	27, 212
Bsp1286I	GDGCHC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	27, 212
BspCNI	CTCAG	2 cut(s)	83, 94
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	22, 202, 213
BssNI	GRCGYC	2 cut(s)	106, 132
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	3, 35
BstACI	GRCGYC	2 cut(s)	106, 132
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	70, 81
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 187, 196, 218, 250
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	109, 212
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	27, 212
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	145
CseI	GACGC	1 cut(s)	121
CviAII	CATG	3 cut(s)	146, 245, 277
CviJI	RGCY	3 cut(s)	27, 126, 212
CviKI_1	RGCY	3 cut(s)	27, 126, 212
DdeI	CTNAG	2 cut(s)	70, 81
Eam1104I	CTCTTC	2 cut(s)	3, 35
EarI	CTCTTC	2 cut(s)	3, 35
Eco130I	CCWWGG	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	3 cut(s)	149, 248, 280
FaiI	YATR	4 cut(s)	129, 147, 246, 278
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	145, 244, 276
Fnu4HI	GCNGC	2 cut(s)	115, 222
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	115, 222
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	115, 222
HaeIII	GGCC	2 cut(s)	27, 212
HapII	CCGG	2 cut(s)	111, 213
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	106, 132
Hin1II	CATG	3 cut(s)	149, 248, 280
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	111, 213
Hpy188I	TCNGA	4 cut(s)	7, 73, 97, 154
Hpy188III	TCNNGA	2 cut(s)	146, 194
HpyAV	CCTTC	3 cut(s)	37, 95, 163
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 187, 196, 218, 250
HpyF3I	CTNAG	2 cut(s)	70, 81
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	2 cut(s)	106, 132
Hsp92II	CATG	3 cut(s)	149, 248, 280
LpnPI	CCDG	7 cut(s)	72, 124, 210, 226, 254, 270, 284
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	89, 133
MboII	GAAGA	3 cut(s)	20, 22, 62
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	6 cut(s)	6, 38, 79, 90, 166, 202
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	2 cut(s)	111, 213
MspR9I	CCNGG	2 cut(s)	111, 214
MwoI	GCNNNNNNNGC	5 cut(s)	123, 187, 196, 218, 250
NciI	CCSGG	2 cut(s)	111, 214
NlaIII	CATG	3 cut(s)	149, 248, 280
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	21
PaeI	GCATGC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	116, 223
PspN4I	GGNNCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	21
SatI	GCNGC	2 cut(s)	115, 222
ScrFI	CCNGG	2 cut(s)	111, 214
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	3 cut(s)	71, 109, 204
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	280
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	109, 212
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	109
TasI	AATT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	63, 114, 162
TspRI	CASTG	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	206
XceI	RCATGY	1 cut(s)	280
XmaJI	CCTAGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.