Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

3169991 .. 3171412

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G034100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCTGAGGAGAAGCACCACCACGGCCTCTTCCACCACCACAAGGATGAAGACAGACCCATTGAAACCTCAGACTACCCTCAGTCTGGTGGTTACTCTGATGAAGGACGTACAGGCAGCGGCTACGGTGGTGGTGGTGGCTACGGCGATGGTGGTGGCGGCTACGGGGACAACACTGCTTATTCTGGTGAAGGACGTCCCGGCAGCGGCTACGGTGGTGGTGGCGGCTATGGAGAGAGCGCTGATTACTCAGATGGCGGCCGTTACAAGGAGACCGCTGCATATGGCACCACTGGCACCCATGAATCTGAAATTGACTACAAGAAGGAGGAGAAGCACCACAAGCATCTTGAGCACCTAAGCGAGGCCGGGGCTGCTGCTGCTGGTGTTTTTGCCCTGCATGAGAAGCACGAGTCAAAGAAAGACCCAGAGCATGCTCACAGGCACAAGATAGAGGAGGAGATTGCTGCAGCAGCTGCAGTTGGGTCTGGTGGGTTTGCCTTCCATGAGCATCATGAGAAGAAAGAGGCAAAGGAAGAAGAGGAAGAGTCTCATGGAAAGAAGCACCACCATCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

194

Amino Acids

20.76

Weight (kDa)

5.68

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	199
AccB1I	GGYRCC	2 cut(s)	287, 296
AciI	CCGC	6 cut(s)	120, 159, 207, 225, 258, 276
AcoI	YGGCCR	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	1 cut(s)	112
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	5 cut(s)	43, 86, 206, 268, 364
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	266, 555
AlwNI	CAGNNNCTG	1 cut(s)	476
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	25, 259, 366
AspLEI	GCGC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	201, 370
AsuHPI	GGTGA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	287, 296
BauI	CACGAG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	3 cut(s)	143, 248, 579
BceAI	ACGGC	3 cut(s)	40, 160, 246
BcnI	CCSGG	2 cut(s)	201, 370
BcoDI	GTCTC	2 cut(s)	266, 555
BfmI	CTRYAG	2 cut(s)	468, 477
BfoI	RGCGCY	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	201, 370
BmiI	GGNNCC	2 cut(s)	289, 298
BmrFI	CCNGG	2 cut(s)	201, 370
BmsI	GCATC	2 cut(s)	355, 520
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	201, 370
BsaHI	GRCGYC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	22, 369
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 86, 206, 268, 364
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	22, 369
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	5 cut(s)	43, 86, 206, 268, 364
BseMII	CTCAG	3 cut(s)	84, 95, 264
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	4 cut(s)	23, 344, 470, 473
BseX3I	CGGCCG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	27, 261, 368
BshNI	GGYRCC	2 cut(s)	287, 296
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	201, 369
BslFI	GGGAC	2 cut(s)	182, 183
BslI	CCNNNNNNNGG	5 cut(s)	43, 86, 206, 268, 364
BsmAI	GTCTC	2 cut(s)	266, 555
BsmFI	GGGAC	2 cut(s)	182, 183
BsnI	GGCC	3 cut(s)	27, 261, 368
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	357
BspACI	CCGC	6 cut(s)	120, 159, 207, 225, 258, 276
BspANI	GGCC	3 cut(s)	27, 261, 368
BspCNI	CTCAG	3 cut(s)	83, 94, 263
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	289, 298
BspMAI	CTGCAG	2 cut(s)	472, 481
BspT107I	GGYRCC	2 cut(s)	287, 296
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	22, 369
BssNI	GRCGYC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	128, 215
Bst6I	CTCTTC	3 cut(s)	35, 534, 540
BstACI	GRCGYC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	5 cut(s)	6, 70, 81, 250, 359
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	266, 555
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	8 cut(s)	294, 343, 352, 374, 380, 406, 473, 476
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	199, 368
BstSFI	CTRYAG	2 cut(s)	468, 477
BstV2I	GAAGAC	1 cut(s)	57
BstZI	CGGCCG	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	27, 261, 368
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 291
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	476
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	6 cut(s)	302, 401, 434, 506, 515, 554
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	5 cut(s)	6, 70, 81, 250, 359
EaeI	YGGCCR	1 cut(s)	259
EagI	CGGCCG	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	35, 534, 540
EarI	CTCTTC	3 cut(s)	35, 534, 540
EclXI	CGGCCG	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	266
Eco47III	AGCGCT	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	362
FaeI	CATG	6 cut(s)	305, 404, 437, 509, 518, 557
FaiI	YATR	9 cut(s)	231, 283, 285, 303, 402, 435, 507, 516, 555
FaqI	GGGAC	2 cut(s)	182, 183
FatI	CATG	6 cut(s)	301, 400, 433, 505, 514, 553
FauNDI	CATATG	1 cut(s)	283
FokI	GGATG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	27, 261, 368
HapII	CCGG	2 cut(s)	201, 369
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	6 cut(s)	305, 404, 437, 509, 518, 557
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	305, 413, 548
HpaII	CCGG	2 cut(s)	201, 369
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	5 cut(s)	7, 73, 100, 253, 310
Hpy188III	TCNNGA	2 cut(s)	350, 515
HpyAV	CCTTC	4 cut(s)	98, 185, 319, 511
HpyCH4III	ACNGT	2 cut(s)	128, 215
HpyCH4IV	ACGT	2 cut(s)	109, 196
HpyCH4V	TGCA	4 cut(s)	281, 400, 470, 479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	294, 343, 352, 374, 380, 406, 473, 476
HpyF3I	CTNAG	5 cut(s)	6, 70, 81, 250, 359
HpySE526I	ACGT	2 cut(s)	109, 196
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	6 cut(s)	305, 404, 437, 509, 518, 557
HspAI	GCGC	1 cut(s)	240
LweI	GCATC	2 cut(s)	355, 520
MaeII	ACGT	2 cut(s)	109, 196
MaeIII	GTNAC	2 cut(s)	92, 263
MboII	GAAGA	7 cut(s)	22, 62, 532, 548, 551, 557, 568
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	422, 557
MnlI	CCTC	9 cut(s)	38, 79, 90, 322, 358, 448, 451, 520, 535
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	4 cut(s)	120, 207, 278, 476
MspI	CCGG	2 cut(s)	201, 369
MspR9I	CCNGG	2 cut(s)	201, 370
MwoI	GCNNNNNNNGC	8 cut(s)	294, 343, 352, 374, 380, 406, 473, 476
NciI	CCSGG	2 cut(s)	201, 370
NdeI	CATATG	1 cut(s)	283
NlaIII	CATG	6 cut(s)	305, 404, 437, 509, 518, 557
NlaIV	GGNNCC	2 cut(s)	289, 298
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	421, 556
PpsI	GAGTC	2 cut(s)	421, 556
PspN4I	GGNNCC	2 cut(s)	289, 298
PstI	CTGCAG	2 cut(s)	472, 481
PstNI	CAGNNNCTG	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	45
SchI	GAGTC	2 cut(s)	422, 557
ScrFI	CCNGG	2 cut(s)	201, 370
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	71, 112, 199, 360, 478
SfaNI	GCATC	2 cut(s)	355, 520
SfcI	CTRYAG	2 cut(s)	468, 477
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	6 cut(s)	120, 159, 207, 225, 258, 276
StyD4I	CCNGG	2 cut(s)	199, 368
TaaI	ACNGT	2 cut(s)	128, 215
TaiI	ACGT	2 cut(s)	112, 199
TasI	AATT	1 cut(s)	312
TauI	GCSGC	5 cut(s)	123, 162, 210, 228, 261
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	2 cut(s)	181, 298
TspDTI	ATGAA	3 cut(s)	63, 117, 318
TspRI	CASTG	2 cut(s)	181, 298
XagI	CCTNNNNNAGG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.