Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Reverse (-)

11617519 .. 11621408

Gene Structure 3890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0086800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTTGACAGTTGTGGTTTCACCTACAACGTACTCTTCCATGTCCTTCAACAACAACTTGTTGAGCACACCTACCAAAAGAAAAATGGCAGATTGGGGGCTTTGGCTCTGAAACTGGACTTGGAAAAGGCATATGACTTGCTAAACTGGCCTTACCTCTCATATTGTCTGAAAAGGTTTGGTTTTCATGAAACTTGGATTAATTTAATTATGAACTGTGTCTCAACAGTTTCTTTCCCAGTTCTTGTGAATGGTTCTCCTACTGGCTTTTTTAAACCTCAAAGAGGCATTAGGCATGGTGATCCTCTATCACCTTACTTCTTTATTCTTGCTATGGAACCTCTAATTAGACATTTGAATGGCCTTGCTAACAACTATAAATCTCAAGTAGGATTACTTTCTTCCCCCTTGGGAGTTAGAATCTCTAATTTAATGTTTGCAGATGACTGCCTAATTTTTGCAAAAGGAACTAAAAAGAGTGCAAGGAACATAGCTCAAGTCCTGACCTTCTTCTCTTCAGCCTCAGACCAGAAGATGAGCTATCATAAATCTTCCATGTTCTTCTCTCCTAAGGTTAACTCTGGTCTCAAAAGGGATATTGTTAACATCTTGAACATTCAGCAAAAGTCTACAATTAGTCAAAAAGAAACAGAGAATTATGTTGCTTGGAATGGCATTTTGGATACAAGAGAGCTCATTCTGAAAGCCTCAGCTGCCATGCTTAAAAGCTTCACTGAAGCTAATGTGCAACCAGGTAGAAACCGGAGAATTTCAGACTGTCCACAATTAGATGGGAACCCCCAAAAGAAGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

272

Amino Acids

30.75

Weight (kDa)

9.58

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	23 - 188	1.5e-19	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	629
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	768
AcuI	CTGAAG	2 cut(s)	501, 756
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	50, 358, 613
AjnI	CCWGG	1 cut(s)	751
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 662, 694
AluBI	AGCT	6 cut(s)	494, 540, 694, 713, 729, 740
AluI	AGCT	6 cut(s)	494, 540, 694, 713, 729, 740
Alw21I	GWGCWC	2 cut(s)	69, 696
Alw26I	GTCTC	2 cut(s)	226, 590
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	149, 361
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	1 cut(s)	768
AseI	ATTAAT	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	13, 303, 311
AxyI	CCTNAGG	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	69, 696
BbvCI	CCTCAGC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	1 cut(s)	785
BciT130I	CCWGG	1 cut(s)	753
BciVI	GTATCC	1 cut(s)	676
BcoDI	GTCTC	2 cut(s)	226, 590
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	1 cut(s)	714
BlsI	GCNGC	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	339, 797
BmrFI	CCNGG	1 cut(s)	753
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	2 cut(s)	369, 480
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	4 cut(s)	120, 152, 239, 268
Bse21I	CCTNAGG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	537, 723
BseNI	ACTGG	4 cut(s)	120, 152, 239, 268
BseXI	GCAGC	1 cut(s)	700
BshFI	GGCC	2 cut(s)	151, 363
BsiHKAI	GWGCWC	2 cut(s)	69, 696
BsiSI	CCGG	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	226, 590
BsnI	GGCC	2 cut(s)	151, 363
Bso31I	GGTCTC	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	69, 696
Bsp143I	GATC	2 cut(s)	301, 810
BspANI	GGCC	2 cut(s)	151, 363
BspCNI	CTCAG	2 cut(s)	536, 722
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	339, 797
BspPI	GGATC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	590
BsrI	ACTGG	4 cut(s)	120, 152, 239, 268
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	2 cut(s)	301, 810
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	4 cut(s)	11, 218, 229, 779
Bst6I	CTCTTC	2 cut(s)	41, 520
BstDEI	CTNAG	3 cut(s)	523, 570, 709
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	304, 813
BstMAI	GTCTC	2 cut(s)	226, 590
BstMBI	GATC	2 cut(s)	301, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 713
BstNI	CCWGG	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	751
BstV1I	GCAGC	1 cut(s)	700
Bsu36I	CCTNAGG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	151, 363
BtsIMutI	CAGTG	1 cut(s)	732
CciI	TCATGA	1 cut(s)	187
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	6 cut(s)	41, 188, 296, 556, 718, 814
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	523, 570, 709
DpnI	GATC	2 cut(s)	303, 812
DpnII	GATC	2 cut(s)	301, 810
DraI	TTTAAA	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	41, 520
EarI	CTCTTC	2 cut(s)	41, 520
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	590
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	501, 756
Eco81I	CCTNAGG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	694
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	6 cut(s)	44, 191, 299, 559, 721, 817
FatI	CATG	6 cut(s)	40, 187, 295, 555, 717, 813
FauNDI	CATATG	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	1 cut(s)	714
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	1 cut(s)	714
GluI	GCNGC	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	151, 363
HapII	CCGG	1 cut(s)	763
Hin1II	CATG	6 cut(s)	44, 191, 299, 559, 721, 817
HincII	GTYRAC	3 cut(s)	7, 577, 604
HindII	GTYRAC	3 cut(s)	7, 577, 604
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	1 cut(s)	420
HpaI	GTTAAC	2 cut(s)	577, 604
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	3 cut(s)	13, 303, 311
Hpy166II	GTNNAC	5 cut(s)	7, 577, 604, 630, 782
Hpy188I	TCNGA	5 cut(s)	111, 171, 526, 702, 775
Hpy188III	TCNNGA	3 cut(s)	188, 502, 610
Hpy8I	GTNNAC	5 cut(s)	7, 577, 604, 630, 782
HpyAV	CCTTC	2 cut(s)	56, 517
HpyCH4III	ACNGT	4 cut(s)	11, 218, 229, 779
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	440, 461, 482, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 713
HpyF3I	CTNAG	3 cut(s)	523, 570, 709
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	44, 191, 299, 559, 721, 817
KspAI	GTTAAC	2 cut(s)	577, 604
Kzo9I	GATC	2 cut(s)	301, 810
Lsp1109I	GCAGC	1 cut(s)	700
MabI	ACCWGGT	1 cut(s)	751
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	303, 812
MboI	GATC	2 cut(s)	301, 810
MboII	GAAGA	7 cut(s)	28, 393, 502, 507, 543, 544, 553
MhlI	GDGCHC	2 cut(s)	69, 696
MluCI	AATT	9 cut(s)	202, 207, 345, 427, 453, 633, 655, 768, 785
MnlI	CCTC	7 cut(s)	167, 278, 288, 315, 351, 532, 718
MseI	TTAA	7 cut(s)	201, 206, 273, 431, 576, 603, 723
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	148, 713
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	301, 810
NlaIII	CATG	6 cut(s)	44, 191, 299, 559, 721, 817
NlaIV	GGNNCC	2 cut(s)	339, 797
PagI	TCATGA	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	715
PshBI	ATTAAT	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	339, 797
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	7 cut(s)	201, 206, 273, 431, 576, 603, 723
SatI	GCNGC	1 cut(s)	714
Sau3AI	GATC	2 cut(s)	301, 810
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	2 cut(s)	69, 696
SexAI	ACCWGGT	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	384, 495
SmoI	CTYRAG	2 cut(s)	384, 495
Sse9I	AATT	9 cut(s)	202, 207, 345, 427, 453, 633, 655, 768, 785
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	11, 218, 229, 779
TaiI	ACGT	1 cut(s)	33
TasI	AATT	9 cut(s)	202, 207, 345, 427, 453, 633, 655, 768, 785
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	7 cut(s)	201, 206, 273, 431, 576, 603, 723
Tru9I	TTAA	7 cut(s)	201, 206, 273, 431, 576, 603, 723
TscAI	CASTG	1 cut(s)	739
TseI	GCWGC	1 cut(s)	713
TspDTI	ATGAA	3 cut(s)	176, 204, 227
TspRI	CASTG	1 cut(s)	739
VspI	ATTAAT	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	768
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.