Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

2320851 .. 2322435

Gene Structure 1585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTGAAGAGAAGCACCACGGCGGTCTCTTCCACCACCACAAGGAGGAAGACAGACCCTCAGACTACCCTCAGTCTGGCTACTCTGATGAAGGACGTCCCGGCGGCCTTGGTGGTGGTTACGGTGACACCAATGATTATTCTGGTGAAGGACGTACCGGTGGCCTAGGTGGTGGCTACGGCGACACCAATGCTTATTCTGGTGAAGGACGTCCCGGCGGCTATGGTGGCTATAACGAGACCACTGCTTACTCTGAGGAAAGAGTTGAAAGACCCGGCGGTGGCCGGTACAGTGAGACCACTGCGGCATATGCCACCACTACCACTCATGAATCTGAAATTGATTACAAGAAGGAGGAGAAGCACCACAAGCACCTCGAGCACCTCGGCGAGGCCGGTGTGGCTGCTGCCGGCGCTTTTGCCTTGCATGAGAAGCAGAAGGAAAAGAAAGATCCAGAGCATGCCCACAGGCACAAGATTGAAGAGGAGATTGCTGCAGCAGCTGCAGTTGGTTCGGGTGGATTTGCCTTCCATGAACATCATGAGAAGAAAGAGACAAAGGAAGAAGAGGAAGAGGCTCATGGAAAGAAGAAGCACCACCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

203

Amino Acids

22.05

Weight (kDa)

5.7

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA_WDS	PF02496	115 - 192	8.2e-33	ABA/WDS induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	100, 214
AciI	CCGC	5 cut(s)	24, 105, 219, 279, 305
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	2 cut(s)	97, 211
AfaI	GTAC	2 cut(s)	157, 290
AfiI	CCNNNNNNNGG	5 cut(s)	43, 46, 77, 281, 391
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	269, 482
AluBI	AGCT	1 cut(s)	503
AluI	AGCT	1 cut(s)	503
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	4 cut(s)	32, 233, 290, 548
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	4 cut(s)	106, 163, 283, 393
ApeKI	GCWGC	6 cut(s)	404, 407, 494, 497, 500, 503
AsiGI	ACCGGT	1 cut(s)	158
AspA2I	CCTAGG	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	416
AsuC2I	CCSGG	3 cut(s)	102, 216, 276
AsuHPI	GGTGA	3 cut(s)	137, 158, 215
AvaI	CYCGRG	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	391, 394, 481, 490, 509, 512
BceAI	ACGGC	2 cut(s)	37, 196
BcgI	CGANNNNNNTGC	6 cut(s)	173, 207, 227, 261, 495, 529
BcnI	CCSGG	3 cut(s)	102, 216, 276
BcoDI	GTCTC	4 cut(s)	32, 233, 290, 548
BfaI	CTAG	2 cut(s)	167, 607
BfmI	CTRYAG	2 cut(s)	495, 504
BfoI	RGCGCY	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	9 cut(s)	106, 220, 306, 405, 408, 495, 498, 501, 504
BlnI	CCTAGG	1 cut(s)	166
BlsI	GCNGC	9 cut(s)	107, 221, 307, 406, 409, 496, 499, 502, 505
Bme1390I	CCNGG	3 cut(s)	102, 216, 276
BmeT110I	CYCGRG	1 cut(s)	377
BmrFI	CCNGG	3 cut(s)	102, 216, 276
BpiI	GAAGAC	1 cut(s)	57
BpuMI	CCSGG	3 cut(s)	102, 216, 276
BsaHI	GRCGYC	2 cut(s)	97, 211
BsaI	GGTCTC	3 cut(s)	32, 233, 290
BsaJI	CCNNGG	4 cut(s)	19, 109, 166, 385
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 46, 77, 281, 391
Bse118I	RCCGGY	4 cut(s)	158, 285, 395, 410
BseDI	CCNNGG	4 cut(s)	19, 109, 166, 385
BseLI	CCNNNNNNNGG	5 cut(s)	43, 46, 77, 281, 391
BseMII	CTCAG	3 cut(s)	75, 86, 246
BseRI	GAGGAG	2 cut(s)	371, 500
BseXI	GCAGC	6 cut(s)	391, 394, 481, 490, 509, 512
BshFI	GGCC	4 cut(s)	108, 165, 285, 395
BshTI	ACCGGT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	7 cut(s)	102, 159, 216, 276, 286, 396, 411
BslFI	GGGAC	2 cut(s)	84, 198
BslI	CCNNNNNNNGG	5 cut(s)	43, 46, 77, 281, 391
BsmAI	GTCTC	4 cut(s)	32, 233, 290, 548
BsmFI	GGGAC	2 cut(s)	84, 198
BsnI	GGCC	4 cut(s)	108, 165, 285, 395
Bso31I	GGTCTC	3 cut(s)	32, 233, 290
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	5 cut(s)	24, 105, 219, 279, 305
BspANI	GGCC	4 cut(s)	108, 165, 285, 395
BspCNI	CTCAG	3 cut(s)	74, 85, 247
BspHI	TCATGA	2 cut(s)	328, 541
BspMAI	CTGCAG	2 cut(s)	499, 508
BspPI	GGATC	1 cut(s)	446
BspTNI	GGTCTC	3 cut(s)	32, 233, 290
BsrFI	RCCGGY	4 cut(s)	158, 285, 395, 410
BssAI	RCCGGY	4 cut(s)	158, 285, 395, 410
BssECI	CCNNGG	4 cut(s)	19, 109, 166, 385
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	2 cut(s)	97, 211
BssT1I	CCWWGG	2 cut(s)	109, 166
Bst4CI	ACNGT	2 cut(s)	125, 293
Bst6I	CTCTTC	5 cut(s)	3, 35, 477, 561, 567
BstACI	GRCGYC	2 cut(s)	97, 211
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	412, 462
BstDEI	CTNAG	3 cut(s)	61, 72, 255
BstDSI	CCRYGG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	4 cut(s)	32, 233, 290, 548
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	9 cut(s)	228, 311, 370, 379, 401, 413, 433, 500, 503
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	100, 214, 274
BstSFI	CTRYAG	2 cut(s)	495, 504
BstV1I	GCAGC	6 cut(s)	391, 394, 481, 490, 509, 512
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	4 cut(s)	108, 165, 285, 395
BtgI	CCRYGG	1 cut(s)	19
BtsI	GCAGTG	2 cut(s)	243, 300
BtsIMutI	CAGTG	3 cut(s)	243, 298, 300
Cac8I	GCNNGC	2 cut(s)	412, 462
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	2 cut(s)	328, 541
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	4 cut(s)	158, 285, 395, 410
Csp6I	GTAC	2 cut(s)	156, 289
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	6 cut(s)	329, 428, 461, 533, 542, 581
CviQI	GTAC	2 cut(s)	156, 289
DdeI	CTNAG	3 cut(s)	61, 72, 255
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	5 cut(s)	3, 35, 477, 561, 567
EarI	CTCTTC	5 cut(s)	3, 35, 477, 561, 567
Eco130I	CCWWGG	2 cut(s)	109, 166
Eco31I	GGTCTC	3 cut(s)	32, 233, 290
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoT14I	CCWWGG	2 cut(s)	109, 166
ErhI	CCWWGG	2 cut(s)	109, 166
FaeI	CATG	6 cut(s)	332, 431, 464, 536, 545, 584
FaqI	GGGAC	2 cut(s)	84, 198
FatI	CATG	6 cut(s)	328, 427, 460, 532, 541, 580
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	9 cut(s)	106, 220, 306, 405, 408, 495, 498, 501, 504
Fsp4HI	GCNGC	9 cut(s)	106, 220, 306, 405, 408, 495, 498, 501, 504
FspBI	CTAG	2 cut(s)	167, 607
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	9 cut(s)	106, 220, 306, 405, 408, 495, 498, 501, 504
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	4 cut(s)	108, 165, 285, 395
HapII	CCGG	7 cut(s)	102, 159, 216, 276, 286, 396, 411
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	2 cut(s)	97, 211
Hin1II	CATG	6 cut(s)	332, 431, 464, 536, 545, 584
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	7 cut(s)	102, 159, 216, 276, 286, 396, 411
HphI	GGTGA	3 cut(s)	137, 158, 215
Hpy188I	TCNGA	5 cut(s)	7, 64, 88, 256, 337
Hpy188III	TCNNGA	3 cut(s)	329, 455, 542
HpyAV	CCTTC	6 cut(s)	86, 143, 200, 346, 433, 538
HpyCH4III	ACNGT	2 cut(s)	125, 293
HpyCH4IV	ACGT	3 cut(s)	97, 154, 211
HpyCH4V	TGCA	3 cut(s)	427, 497, 506
HpyF10VI	GCNNNNNNNGC	9 cut(s)	228, 311, 370, 379, 401, 413, 433, 500, 503
HpyF3I	CTNAG	3 cut(s)	61, 72, 255
HpySE526I	ACGT	3 cut(s)	97, 154, 211
Hsp92I	GRCGYC	2 cut(s)	97, 211
Hsp92II	CATG	6 cut(s)	332, 431, 464, 536, 545, 584
HspAI	GCGC	1 cut(s)	414
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	451
Lsp1109I	GCAGC	6 cut(s)	391, 394, 481, 490, 509, 512
MaeI	CTAG	2 cut(s)	167, 607
MaeII	ACGT	3 cut(s)	97, 154, 211
MaeIII	GTNAC	2 cut(s)	119, 125
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	1 cut(s)	339
MroNI	GCCGGC	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	7 cut(s)	102, 159, 216, 276, 286, 396, 411
MspR9I	CCNGG	3 cut(s)	102, 216, 276
MwoI	GCNNNNNNNGC	9 cut(s)	228, 311, 370, 379, 401, 413, 433, 500, 503
NaeI	GCCGGC	1 cut(s)	412
NciI	CCSGG	3 cut(s)	102, 216, 276
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	1 cut(s)	451
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	6 cut(s)	332, 431, 464, 536, 545, 584
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	464
PaeR7I	CTCGAG	1 cut(s)	377
PagI	TCATGA	2 cut(s)	328, 541
PdiI	GCCGGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	9 cut(s)	107, 221, 307, 406, 409, 496, 499, 502, 505
PspXI	VCTCGAGB	1 cut(s)	377
PstI	CTGCAG	2 cut(s)	499, 508
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	157, 290
RsaNI	GTAC	2 cut(s)	156, 289
SatI	GCNGC	9 cut(s)	106, 220, 306, 405, 408, 495, 498, 501, 504
Sau3AI	GATC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	102, 216, 276
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	8 cut(s)	100, 157, 172, 214, 378, 387, 505, 603
SfcI	CTRYAG	2 cut(s)	495, 504
Sfr274I	CTCGAG	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	5 cut(s)	24, 105, 219, 279, 305
SspMI	CTAG	2 cut(s)	167, 607
StyD4I	CCNGG	3 cut(s)	100, 214, 274
StyI	CCWWGG	2 cut(s)	109, 166
TaaI	ACNGT	2 cut(s)	125, 293
TaiI	ACGT	3 cut(s)	100, 157, 214
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	339
TauI	GCSGC	3 cut(s)	108, 222, 308
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	3 cut(s)	250, 298, 307
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	6 cut(s)	404, 407, 494, 497, 500, 503
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	105, 345, 549
TspRI	CASTG	3 cut(s)	250, 298, 307
XagI	CCTNNNNNAGG	1 cut(s)	389
XceI	RCATGY	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	166
XspI	CTAG	2 cut(s)	167, 607
ZraI	GACGTC	2 cut(s)	98, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.