Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043110.1

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

1502 .. 1930

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtctggagagaagcaccaccacggcctcttccaccaccacaaggacaacgaggataaaccggttgaaacctccgcctacaaatcacagactacttacgaaggcggcggctacagcgagaccaccggttattccgctgagggagagggtggcaggtacaaaagtgagaccaccgacgcctatggctcagctgctcccggcggtggccgatacaccagcgagaccactggttacgtaaaggagggacacggtggcaagtacagcgagaccagaaccgaagcttatggcaccactgaatccggaatcgattacaagaaggaggagaagcaccacaaacatctcgaagaactcggcgggctcggtgctgctgctgctggagcttatgctttggtacaaattgaattaaccctacatatatttaaattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

142

Amino Acids

15.39

Weight (kDa)

5.85

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	6 cut(s)	75, 105, 108, 135, 201, 354
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	158, 260, 393
AfiI	CCNNNNNNNGG	2 cut(s)	43, 203
AgeI	ACCGGT	2 cut(s)	61, 125
AgsI	TTSAA	2 cut(s)	68, 401
AluBI	AGCT	3 cut(s)	191, 281, 380
AluI	AGCT	3 cut(s)	191, 281, 380
Alw26I	GTCTC	4 cut(s)	113, 161, 215, 260
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	2 cut(s)	25, 205
ApeKI	GCWGC	4 cut(s)	191, 365, 368, 371
ApoI	RAATTY	1 cut(s)	422
AsiGI	ACCGGT	2 cut(s)	61, 125
AsuC2I	CCSGG	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	178, 352, 355, 358
BceAI	ACGGC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	4 cut(s)	113, 161, 215, 260
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	6 cut(s)	106, 109, 192, 366, 369, 372
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	6 cut(s)	107, 110, 193, 367, 370, 373
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	198
BpmI	CTGGAG	2 cut(s)	27, 396
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	4 cut(s)	113, 161, 215, 260
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	3 cut(s)	61, 125, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 203
Bse118I	RCCGGY	2 cut(s)	61, 125
Bse1I	ACTGG	1 cut(s)	232
BseAI	TCCGGA	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	43, 203
BseMII	CTCAG	2 cut(s)	129, 201
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	178, 352, 355, 358
BshFI	GGCC	2 cut(s)	27, 207
BshNI	GGYRCC	1 cut(s)	287
BshTI	ACCGGT	2 cut(s)	61, 125
BshVI	ATCGAT	1 cut(s)	306
BsiSI	CCGG	4 cut(s)	62, 126, 198, 300
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	43, 203
BsmAI	GTCTC	4 cut(s)	113, 161, 215, 260
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	27, 207
Bso31I	GGTCTC	4 cut(s)	113, 161, 215, 260
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	187
BspACI	CCGC	6 cut(s)	75, 105, 108, 135, 201, 354
BspANI	GGCC	2 cut(s)	27, 207
BspCNI	CTCAG	2 cut(s)	130, 200
BspDI	ATCGAT	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	4 cut(s)	113, 161, 215, 260
BsrFI	RCCGGY	2 cut(s)	61, 125
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	2 cut(s)	61, 125
BssECI	CCNNGG	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	138, 187
BstDSI	CCRYGG	1 cut(s)	22
BstMAI	GTCTC	4 cut(s)	113, 161, 215, 260
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 261, 371, 377
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	112
BstSNI	TACGTA	1 cut(s)	235
BstV1I	GCAGC	4 cut(s)	178, 352, 355, 358
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	27, 207
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	225, 291
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	356
Cfr10I	RCCGGY	2 cut(s)	61, 125
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	157, 259, 392
CspAI	ACCGGT	2 cut(s)	61, 125
CviJI	RGCY	8 cut(s)	27, 111, 186, 191, 207, 281, 358, 380
CviKI_1	RGCY	8 cut(s)	27, 111, 186, 191, 207, 281, 358, 380
CviQI	GTAC	3 cut(s)	157, 259, 392
DdeI	CTNAG	2 cut(s)	138, 187
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	64
Eco105I	TACGTA	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	4 cut(s)	113, 161, 215, 260
EcoT38I	GRGCYC	1 cut(s)	360
FaiI	YATR	5 cut(s)	183, 285, 384, 414, 416
FaqI	GGGAC	1 cut(s)	258
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	6 cut(s)	106, 109, 192, 366, 369, 372
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	6 cut(s)	106, 109, 192, 366, 369, 372
GluI	GCNGC	6 cut(s)	106, 109, 192, 366, 369, 372
GsuI	CTGGAG	2 cut(s)	27, 396
HaeIII	GGCC	2 cut(s)	27, 207
HapII	CCGG	4 cut(s)	62, 126, 198, 300
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	2 cut(s)	296, 303
HpaII	CCGG	4 cut(s)	62, 126, 198, 300
Hpy188III	TCNNGA	3 cut(s)	6, 300, 341
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	95, 310
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 261, 371, 377
HpyF3I	CTNAG	2 cut(s)	138, 187
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	199, 377
LpnPI	CCDG	9 cut(s)	75, 139, 139, 211, 213, 229, 283, 313, 360
Lsp1109I	GCAGC	4 cut(s)	178, 352, 355, 358
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	230
MboII	GAAGA	2 cut(s)	22, 356
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	396, 401, 422
MnlI	CCTC	7 cut(s)	38, 46, 82, 133, 139, 235, 313
MroI	TCCGGA	1 cut(s)	299
MseI	TTAA	2 cut(s)	404, 420
MspA1I	CMGCKG	2 cut(s)	137, 191
MspI	CCGG	4 cut(s)	62, 126, 198, 300
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	114, 261, 371, 377
NciI	CCSGG	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	296, 303
PinAI	ACCGGT	2 cut(s)	61, 125
PkrI	GCNGC	6 cut(s)	107, 110, 193, 367, 370, 373
Ppu21I	YACGTR	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	158, 260, 393
RsaNI	GTAC	3 cut(s)	157, 259, 392
SaqAI	TTAA	2 cut(s)	404, 420
SatI	GCNGC	6 cut(s)	106, 109, 192, 366, 369, 372
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	6 cut(s)	74, 158, 193, 237, 283, 382
SfcI	CTRYAG	1 cut(s)	112
SmiI	ATTTAAAT	1 cut(s)	421
SnaBI	TACGTA	1 cut(s)	235
Sse9I	AATT	3 cut(s)	396, 401, 422
SsiI	CCGC	6 cut(s)	75, 105, 108, 135, 201, 354
StyD4I	CCNGG	1 cut(s)	196
SwaI	ATTTAAAT	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	306, 342
TasI	AATT	3 cut(s)	396, 401, 422
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	2 cut(s)	108, 111
TfiI	GAWTC	2 cut(s)	296, 303
Tru1I	TTAA	2 cut(s)	404, 420
Tru9I	TTAA	2 cut(s)	404, 420
TscAI	CASTG	2 cut(s)	232, 298
TseI	GCWGC	4 cut(s)	191, 365, 368, 371
TspRI	CASTG	2 cut(s)	232, 298
XapI	RAATTY	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.