Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

4680956 .. 4683817

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1028500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTGATCAGGAGCAGCACAGCCGTGGCCTCTTCTCCCACCAAAGGGACGAAGACGAGGACGAGAAACCCTCATCCTACTCTCAGTCTCAGTCTGGTTACGGTGATCAAGCCCGTTCTGGTGGTGCTTATGGCGACTCCACTACTGGTTACTCTTCCGAAGGACGTACCGGTGCCCGCAGCGGTAGCGGCTACGGTGACAGCACTGATTACTCTGGTGAAGGATGCCATACTGGCGGAGGCGGCTACGGAGGAGGCAAAACTGATGATTACTCGGAAGAGGGACACGGAGGCCGTGCAGCGTACAGCGAGACCACAGCTTACTCTAGCGAAGGACGTCTTACCGGCGGAGGTGGCTACGGCGGGACCGGCAACACTGATAGTTACTCGGAAGAAGGACAAGGAGGCCGTGCTACCGAGACCACAGCTTACTCTAGCGAAGGACGTCGTACCAGCGGAGGTGGTTACGGCGGGACCGGCAACGCTGATAGTTACTCGGAAGAAGGACACGGAGGCCGAGCTACCGAGACCACTGCGTACTCTGGTGAAGGACGTCGTACTAGCGGCGGAGGTGGCTATGGCGGGGGAAGCACTGATGATTACTTGGAGGAAGGACACGGAGGGCGTCGCGGGTACAAAAAATCTGATGATGATGACTCGGAAGAAGGACACGGAGGGCGTGGCGGAGGAGGGTACAGCAAGAAAAGTGACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

239

Amino Acids

24.2

Weight (kDa)

4.65

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	340, 448, 556
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	630
AcyI	GRCGYC	4 cut(s)	337, 445, 553, 625
AfaI	GTAC	7 cut(s)	169, 305, 451, 539, 559, 635, 695
AfiI	CCNNNNNNNGG	2 cut(s)	45, 46
AgeI	ACCGGT	1 cut(s)	170
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	3 cut(s)	320, 428, 521
AluI	AGCT	3 cut(s)	320, 428, 521
Alw26I	GTCTC	4 cut(s)	93, 305, 413, 521
AoxI	GGCC	4 cut(s)	28, 292, 406, 514
ApeKI	GCWGC	3 cut(s)	16, 180, 299
AsiGI	ACCGGT	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	366, 474
AsuHPI	GGTGA	4 cut(s)	116, 209, 230, 557
AvaII	GGWCC	2 cut(s)	366, 474
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	28, 192, 311
BceAI	ACGGC	5 cut(s)	9, 279, 376, 393, 484
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BclI	TGATCA	2 cut(s)	7, 106
BcoDI	GTCTC	4 cut(s)	93, 305, 413, 521
BfaI	CTAG	3 cut(s)	327, 435, 561
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	6 cut(s)	17, 181, 190, 244, 300, 565
BlsI	GCNGC	6 cut(s)	18, 182, 191, 245, 301, 566
Bme18I	GGWCC	2 cut(s)	366, 474
BmgT120I	GGNCC	2 cut(s)	366, 474
BmiI	GGNNCC	3 cut(s)	175, 367, 475
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BsaHI	GRCGYC	4 cut(s)	337, 445, 553, 625
BsaI	GGTCTC	3 cut(s)	305, 413, 521
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 46
Bse118I	RCCGGY	4 cut(s)	170, 344, 368, 476
Bse1I	ACTGG	2 cut(s)	151, 238
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	74, 230
BseLI	CCNNNNNNNGG	2 cut(s)	45, 46
BseMII	CTCAG	2 cut(s)	98, 104
BseNI	ACTGG	2 cut(s)	151, 238
BseRI	GAGGAG	2 cut(s)	267, 702
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	28, 192, 311
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	4 cut(s)	30, 294, 408, 516
BshNI	GGYRCC	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	170
BsiSI	CCGG	4 cut(s)	171, 345, 369, 477
BslFI	GGGAC	4 cut(s)	62, 297, 379, 487
BslI	CCNNNNNNNGG	2 cut(s)	45, 46
BsmAI	GTCTC	4 cut(s)	93, 305, 413, 521
BsmFI	GGGAC	4 cut(s)	62, 297, 379, 487
BsnI	GGCC	4 cut(s)	30, 294, 408, 516
Bso31I	GGTCTC	3 cut(s)	305, 413, 521
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	7, 106
BspANI	GGCC	4 cut(s)	30, 294, 408, 516
BspCNI	CTCAG	2 cut(s)	97, 103
BspFNI	CGCG	1 cut(s)	630
BspLI	GGNNCC	3 cut(s)	175, 367, 475
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	3 cut(s)	305, 413, 521
BsrFI	RCCGGY	4 cut(s)	170, 344, 368, 476
BsrI	ACTGG	2 cut(s)	151, 238
BssAI	RCCGGY	4 cut(s)	170, 344, 368, 476
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	7, 106
BssNI	GRCGYC	4 cut(s)	337, 445, 553, 625
Bst4CI	ACNGT	2 cut(s)	104, 197
Bst6I	CTCTTC	3 cut(s)	38, 160, 273
BstACI	GRCGYC	4 cut(s)	337, 445, 553, 625
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	84, 90
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	74, 230
BstFNI	CGCG	1 cut(s)	630
BstKTI	GATC	2 cut(s)	10, 109
BstMAI	GTCTC	4 cut(s)	93, 305, 413, 521
BstMBI	GATC	2 cut(s)	7, 106
BstMWI	GCNNNNNNNGC	9 cut(s)	186, 189, 234, 243, 354, 369, 477, 573, 588
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	28, 192, 311
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	30, 294, 408, 516
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	74, 230
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	4 cut(s)	204, 375, 531, 591
Cac8I	GCNNGC	1 cut(s)	178
Cfr10I	RCCGGY	4 cut(s)	170, 344, 368, 476
Cfr13I	GGNCC	2 cut(s)	366, 474
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	7 cut(s)	168, 304, 450, 538, 558, 634, 694
CspAI	ACCGGT	1 cut(s)	170
CviQI	GTAC	7 cut(s)	168, 304, 450, 538, 558, 634, 694
DdeI	CTNAG	2 cut(s)	84, 90
DpnI	GATC	2 cut(s)	9, 108
DpnII	GATC	2 cut(s)	7, 106
Eam1104I	CTCTTC	3 cut(s)	38, 160, 273
EarI	CTCTTC	3 cut(s)	38, 160, 273
EciI	GGCGGA	4 cut(s)	252, 363, 582, 699
Eco31I	GGTCTC	3 cut(s)	305, 413, 521
Eco47I	GGWCC	2 cut(s)	366, 474
FaiI	YATR	3 cut(s)	132, 231, 579
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	4 cut(s)	62, 297, 379, 487
FauI	CCCGC	5 cut(s)	185, 356, 464, 575, 623
FbaI	TGATCA	2 cut(s)	7, 106
Fnu4HI	GCNGC	6 cut(s)	17, 181, 190, 244, 300, 565
FokI	GGATG	2 cut(s)	61, 237
Fsp4HI	GCNGC	6 cut(s)	17, 181, 190, 244, 300, 565
FspBI	CTAG	3 cut(s)	327, 435, 561
GluI	GCNGC	6 cut(s)	17, 181, 190, 244, 300, 565
HaeIII	GGCC	4 cut(s)	30, 294, 408, 516
HapII	CCGG	4 cut(s)	171, 345, 369, 477
HgaI	GACGC	1 cut(s)	614
Hin1I	GRCGYC	4 cut(s)	337, 445, 553, 625
HinfI	GANTC	2 cut(s)	137, 656
HpaII	CCGG	4 cut(s)	171, 345, 369, 477
HphI	GGTGA	4 cut(s)	116, 209, 230, 557
Hpy188I	TCNGA	6 cut(s)	160, 277, 391, 499, 646, 661
Hpy188III	TCNNGA	1 cut(s)	11
Hpy99I	CGWCG	3 cut(s)	450, 558, 630
HpyAV	CCTTC	9 cut(s)	155, 215, 326, 389, 434, 497, 542, 605, 659
HpyCH4III	ACNGT	2 cut(s)	104, 197
HpyCH4IV	ACGT	4 cut(s)	166, 337, 445, 553
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	9 cut(s)	186, 189, 234, 243, 354, 369, 477, 573, 588
HpyF3I	CTNAG	2 cut(s)	84, 90
HpySE526I	ACGT	4 cut(s)	166, 337, 445, 553
Hsp92I	GRCGYC	4 cut(s)	337, 445, 553, 625
Ksp22I	TGATCA	2 cut(s)	7, 106
Kzo9I	GATC	2 cut(s)	7, 106
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	3 cut(s)	28, 192, 311
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	3 cut(s)	327, 435, 561
MaeII	ACGT	4 cut(s)	166, 337, 445, 553
MaeIII	GTNAC	7 cut(s)	98, 149, 197, 383, 464, 491, 707
MalI	GATC	2 cut(s)	9, 108
MboI	GATC	2 cut(s)	7, 106
MboII	GAAGA	7 cut(s)	25, 65, 147, 290, 404, 512, 674
MhlI	GDGCHC	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	131, 650
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	183, 456
MspI	CCGG	4 cut(s)	171, 345, 369, 477
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	9 cut(s)	186, 189, 234, 243, 354, 369, 477, 573, 588
NdeII	GATC	2 cut(s)	7, 106
NlaIV	GGNNCC	3 cut(s)	175, 367, 475
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	2 cut(s)	197, 707
OliI	CACNNNNGTG	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	18, 182, 191, 245, 301, 566
PleI	GAGTC	2 cut(s)	131, 650
PpsI	GAGTC	2 cut(s)	131, 650
PspN4I	GGNNCC	3 cut(s)	175, 367, 475
PspPI	GGNCC	2 cut(s)	366, 474
RsaI	GTAC	7 cut(s)	169, 305, 451, 539, 559, 635, 695
RsaNI	GTAC	7 cut(s)	168, 304, 450, 538, 558, 634, 694
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	6 cut(s)	17, 181, 190, 244, 300, 565
Sau3AI	GATC	2 cut(s)	7, 106
Sau96I	GGNCC	2 cut(s)	366, 474
SchI	GAGTC	2 cut(s)	131, 650
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	215
SinI	GGWCC	2 cut(s)	366, 474
SmiMI	CAYNNNNRTG	1 cut(s)	24
SspMI	CTAG	3 cut(s)	327, 435, 561
TaaI	ACNGT	2 cut(s)	104, 197
TaiI	ACGT	4 cut(s)	169, 340, 448, 556
TauI	GCSGC	3 cut(s)	192, 246, 567
TscAI	CASTG	4 cut(s)	211, 382, 538, 598
TseFI	GTSAC	2 cut(s)	197, 707
TseI	GCWGC	3 cut(s)	16, 180, 299
Tsp45I	GTSAC	2 cut(s)	197, 707
TspGWI	ACGGA	5 cut(s)	264, 303, 525, 633, 687
TspRI	CASTG	4 cut(s)	211, 382, 538, 598
VpaK11BI	GGWCC	2 cut(s)	366, 474
XspI	CTAG	3 cut(s)	327, 435, 561
ZraI	GACGTC	3 cut(s)	338, 446, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.