Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

3806737 .. 3807697

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1029100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTTATTCTGGTGGACGTCCCGGCGGTGGCCGGTACAGTGAGACCACTGCGGCATATGGTGGCACCACCACTCATGAATCTGAAATTGATTACAAGAAGGAGGAGAAGCACCACAAGCATCTCGAGCACCTCGGCGAGGCCGGTGTTGGTGCTGCCGGCGCTTTTGCCTTGGTATCGTGAGAAGCACAAGGAAAAGAAAGACCCAGAGCATGCTCACAAGCACAAGATAGAAGAGGAGATTGCTGCAGCAGCTGCAGTTGGTTCTGGTGGATATGCCTTCCATGAGCATCATGAGAAGAAAAAGACACAGGAAGAGGAGGAAGAGGCTCATGGAAAAAAGAAGCACCACCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

120

Amino Acids

13.51

Weight (kDa)

9.69

Isoelectric Point (pI)

72.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA_WDS	PF02496	61 - 109	2.7e-20	ABA/WDS induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	64
AciI	CCGC	2 cut(s)	26, 52
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	28, 138
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	2 cut(s)	30, 140
ApeKI	GCWGC	5 cut(s)	154, 245, 248, 251, 254
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	5 cut(s)	141, 232, 241, 260, 263
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	358
BfmI	CTRYAG	2 cut(s)	246, 255
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	6 cut(s)	53, 155, 246, 249, 252, 255
BlsI	GCNGC	6 cut(s)	54, 156, 247, 250, 253, 256
Bme1390I	CCNGG	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	129, 298
BpuMI	CCSGG	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	132, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 138
Bse118I	RCCGGY	3 cut(s)	32, 142, 157
BseDI	CCNNGG	2 cut(s)	132, 170
BseLI	CCNNNNNNNGG	2 cut(s)	28, 138
BseRI	GAGGAG	3 cut(s)	118, 251, 332
BseXI	GCAGC	5 cut(s)	141, 232, 241, 260, 263
BshFI	GGCC	2 cut(s)	32, 142
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	4 cut(s)	23, 33, 143, 158
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	28, 138
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	32, 142
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	26, 52
BspANI	GGCC	2 cut(s)	32, 142
BspHI	TCATGA	2 cut(s)	75, 292
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	2 cut(s)	250, 259
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	37
BsrFI	RCCGGY	3 cut(s)	32, 142, 157
BssAI	RCCGGY	3 cut(s)	32, 142, 157
BssECI	CCNNGG	2 cut(s)	132, 170
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	3 cut(s)	228, 309, 318
BstACI	GRCGYC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	159, 213
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 126, 160, 251, 254
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	2 cut(s)	246, 255
BstV1I	GCAGC	5 cut(s)	141, 232, 241, 260, 263
BsuRI	GGCC	2 cut(s)	32, 142
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	45, 47
Cac8I	GCNNGC	2 cut(s)	159, 213
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	2 cut(s)	75, 292
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	3 cut(s)	32, 142, 157
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	5 cut(s)	76, 212, 284, 293, 332
CviJI	RGCY	4 cut(s)	32, 142, 254, 329
CviKI_1	RGCY	4 cut(s)	32, 142, 254, 329
CviQI	GTAC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	3 cut(s)	228, 309, 318
EarI	CTCTTC	3 cut(s)	228, 309, 318
Eco130I	CCWWGG	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	5 cut(s)	79, 215, 287, 296, 335
FaiI	YATR	8 cut(s)	57, 59, 77, 213, 276, 285, 294, 333
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	5 cut(s)	75, 211, 283, 292, 331
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	6 cut(s)	53, 155, 246, 249, 252, 255
Fsp4HI	GCNGC	6 cut(s)	53, 155, 246, 249, 252, 255
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	6 cut(s)	53, 155, 246, 249, 252, 255
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	32, 142
HapII	CCGG	4 cut(s)	23, 33, 143, 158
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	79, 215, 287, 296, 335
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	4 cut(s)	23, 33, 143, 158
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	4 cut(s)	76, 124, 179, 293
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	93, 289
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	248, 257
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 126, 160, 251, 254
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	79, 215, 287, 296, 335
HspAI	GCGC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
LpnPI	CCDG	7 cut(s)	36, 46, 156, 171, 219, 252, 296
Lsp1109I	GCAGC	5 cut(s)	141, 232, 241, 260, 263
LweI	GCATC	2 cut(s)	129, 298
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	1 cut(s)	18
MboII	GAAGA	5 cut(s)	245, 310, 326, 335, 346
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	86
MnlI	CCTC	7 cut(s)	96, 132, 142, 229, 310, 313, 319
MroNI	GCCGGC	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	4 cut(s)	23, 33, 143, 158
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	5 cut(s)	117, 126, 160, 251, 254
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	57
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	5 cut(s)	79, 215, 287, 296, 335
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	113
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	124
PagI	TCATGA	2 cut(s)	75, 292
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	54, 156, 247, 250, 253, 256
PspN4I	GGNNCC	1 cut(s)	66
PstI	CTGCAG	2 cut(s)	250, 259
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SatI	GCNGC	6 cut(s)	53, 155, 246, 249, 252, 255
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	4 cut(s)	21, 134, 256, 354
SfaNI	GCATC	2 cut(s)	129, 298
SfcI	CTRYAG	2 cut(s)	246, 255
Sfr274I	CTCGAG	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	26, 52
SspMI	CTAG	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	45, 54
TseI	GCWGC	5 cut(s)	154, 245, 248, 251, 254
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	45, 54
XagI	CCTNNNNNAGG	1 cut(s)	136
XceI	RCATGY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	124
XspI	CTAG	1 cut(s)	358
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.