Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

3175008 .. 3176568

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G034200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCATACCCAACGCAACACCCCTTACCTCATAATCTTCCTTCATCCTCGCATTTTCTTCAAAATACCCAAAATACCCCTCAACATGGCTAACCAGGAACAGCACCGCCTCGGCCTCTTCAACCAGGACAGAGAAGAAGACAAATCCTCATCCTTCTCTCAGCCCGGTTATGGAGATCAAGGCCGCACTGGTGGTGGTTACGGCGACAGCACTGGCTATGGCGACTCCACTGGTTACTCTTCTCAAGGACGTGCCGGTGGTGGTGGCGGCGGCTATGGCGACAACACGGATTACTCCGGTGAAGGACGCCGTACTGGCGGAGGAGGCTACGGCGGCAGCACTGATTACTCTGGTGGTGAAGAGCGTCGTGCTAGTGGCGGCGGTGGCTATGGCGACAGTTACTCTGGTGAAGGACGTCGTACCGGCGGCGGCGGCTATGGAGACAGCACTGATTACTCTGGTGAAGGACGTCGTACCGGTGGGGGCGGCGGTGGATACGGAGACAGTTACTCTAGTGAGAGACGTACTCAAAATGTCGGTGGCGACGGAGACAGTTACTCGGAAGAAGGACACGGGGGCCGTGGCGAGACCACTGCTTACTCTTCTGATGGGCCCCGCGGCGGACAGCACAGTGAGACGTCTGAAACCTATGGGTCTCGTGACTCTGGAGACTACAAGAAGCAGGAGAAGCACCACAAACATCTCGAGGAACTTGGGGAGCTAGGTTCTGCTGCTGCCGGCACTTATGCATTGTATGAGAAGCACGAGGCAAAGAAAGACCCAGAGCATGCTCGCAGGCACAGGATAGAGGAGGAGATTGGGGCAACGGGGGCAGTTGGTTCGGGTGGGTATGCCTTCCACGAGCATCATGAGGAGAAAGAGTCAGAGAGAGAAGAGGAAGAGTCTCATGGAAAGAAGCACCACCACCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

312

Amino Acids

33.22

Weight (kDa)

5.62

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	418, 472, 641
AccII	CGCG	1 cut(s)	618
AcyI	GRCGYC	4 cut(s)	307, 415, 469, 638
AfaI	GTAC	4 cut(s)	313, 421, 475, 526
AfiI	CCNNNNNNNGG	3 cut(s)	85, 170, 620
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	61, 121
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	93, 123
AluBI	AGCT	1 cut(s)	721
AluI	AGCT	1 cut(s)	721
Alw26I	GTCTC	9 cut(s)	435, 495, 514, 543, 581, 629, 660, 663, 909
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	4 cut(s)	112, 181, 577, 611
ApaI	GGGCCC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	336, 731, 734
AsiGI	ACCGGT	1 cut(s)	476
AspS9I	GGNCC	3 cut(s)	577, 611, 612
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	4 cut(s)	311, 368, 419, 473
AvaI	CYCGRG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	615
BauI	CACGAG	3 cut(s)	657, 764, 860
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	348, 718, 721
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	4 cut(s)	217, 294, 346, 564
BcgI	CGANNNNNNTGC	4 cut(s)	575, 609, 822, 856
BciT130I	CCWGG	2 cut(s)	95, 125
BciVI	GTATCC	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	9 cut(s)	435, 495, 514, 543, 581, 629, 660, 663, 909
BfaI	CTAG	3 cut(s)	372, 513, 722
BfuI	GTATCC	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	315
Bme1390I	CCNGG	3 cut(s)	95, 125, 165
BmeT110I	CYCGRG	1 cut(s)	704
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	577, 611, 612
BmiI	GGNNCC	3 cut(s)	578, 613, 614
BmrFI	CCNGG	3 cut(s)	95, 125, 165
BmsI	GCATC	1 cut(s)	874
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BpmI	CTGGAG	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	4 cut(s)	307, 415, 469, 638
BsaI	GGTCTC	2 cut(s)	581, 660
BsaJI	CCNNGG	3 cut(s)	109, 580, 616
BsaWI	WCCGGW	2 cut(s)	296, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	866, 896
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 170, 620
Bse118I	RCCGGY	4 cut(s)	254, 422, 476, 737
Bse1I	ACTGG	4 cut(s)	193, 217, 235, 319
BseBI	CCWGG	2 cut(s)	95, 125
BseDI	CCNNGG	3 cut(s)	109, 580, 616
BseGI	GGATG	2 cut(s)	43, 149
BseLI	CCNNNNNNNGG	3 cut(s)	85, 170, 620
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	4 cut(s)	193, 217, 235, 319
BseRI	GAGGAG	4 cut(s)	336, 824, 827, 887
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	3 cut(s)	348, 718, 721
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	4 cut(s)	114, 183, 579, 613
BshTI	ACCGGT	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	6 cut(s)	165, 255, 297, 423, 477, 738
BslI	CCNNNNNNNGG	3 cut(s)	85, 170, 620
BsmAI	GTCTC	9 cut(s)	435, 495, 514, 543, 581, 629, 660, 663, 909
BsmBI	CGTCTC	2 cut(s)	514, 629
BsnI	GGCC	4 cut(s)	114, 183, 579, 613
Bso31I	GGTCTC	2 cut(s)	581, 660
BsoBI	CYCGRG	1 cut(s)	704
Bsp120I	GGGCCC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	4 cut(s)	114, 183, 579, 613
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	578, 613, 614
BspQI	GCTCTTC	1 cut(s)	354
BspTNI	GGTCTC	2 cut(s)	581, 660
BsrFI	RCCGGY	4 cut(s)	254, 422, 476, 737
BsrI	ACTGG	4 cut(s)	193, 217, 235, 319
BssAI	RCCGGY	4 cut(s)	254, 422, 476, 737
BssECI	CCNNGG	3 cut(s)	109, 580, 616
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	4 cut(s)	307, 415, 469, 638
BssSI	CACGAG	3 cut(s)	657, 764, 860
Bst2BI	CACGAG	3 cut(s)	657, 764, 860
Bst2UI	CCWGG	2 cut(s)	95, 125
Bst4CI	ACNGT	4 cut(s)	398, 506, 554, 632
Bst6I	CTCTTC	6 cut(s)	122, 244, 354, 607, 888, 894
BstACI	GRCGYC	4 cut(s)	307, 415, 469, 638
BstC8I	GCNNGC	4 cut(s)	739, 789, 793, 797
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	2 cut(s)	580, 616
BstF5I	GGATG	2 cut(s)	43, 149
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	9 cut(s)	435, 495, 514, 543, 581, 629, 660, 663, 909
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	8 cut(s)	276, 315, 324, 333, 384, 432, 688, 830
BstNI	CCWGG	2 cut(s)	95, 125
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	3 cut(s)	93, 123, 163
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	348, 718, 721
BstV2I	GAAGAC	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	114, 183, 579, 613
BtgI	CCRYGG	2 cut(s)	580, 616
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	43, 149
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	7 cut(s)	186, 210, 228, 339, 447, 591, 637
Cac8I	GCNNGC	4 cut(s)	739, 789, 793, 797
CciI	TCATGA	1 cut(s)	868
Cfr10I	RCCGGY	4 cut(s)	254, 422, 476, 737
Cfr13I	GGNCC	3 cut(s)	577, 611, 612
Cfr42I	CCGCGG	1 cut(s)	619
CseI	GACGC	2 cut(s)	315, 353
Csp6I	GTAC	4 cut(s)	312, 420, 474, 525
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	4 cut(s)	85, 788, 869, 908
CviQI	GTAC	4 cut(s)	312, 420, 474, 525
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	6 cut(s)	122, 244, 354, 607, 888, 894
EarI	CTCTTC	6 cut(s)	122, 244, 354, 607, 888, 894
EciI	GGCGGA	2 cut(s)	333, 636
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	2 cut(s)	581, 660
Eco88I	CYCGRG	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRII	CCWGG	2 cut(s)	93, 123
EcoT22I	ATGCAT	2 cut(s)	6, 751
EcoT38I	GRGCYC	1 cut(s)	615
Esp3I	CGTCTC	2 cut(s)	514, 629
FaeI	CATG	4 cut(s)	88, 791, 872, 911
FatI	CATG	4 cut(s)	84, 787, 868, 907
FauI	CCCGC	1 cut(s)	623
FokI	GGATG	2 cut(s)	30, 136
FriOI	GRGCYC	1 cut(s)	615
FspBI	CTAG	3 cut(s)	372, 513, 722
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	4 cut(s)	114, 183, 579, 613
HapII	CCGG	6 cut(s)	165, 255, 297, 423, 477, 738
HgaI	GACGC	2 cut(s)	315, 353
Hin1I	GRCGYC	4 cut(s)	307, 415, 469, 638
Hin1II	CATG	4 cut(s)	88, 791, 872, 911
HinfI	GANTC	4 cut(s)	224, 662, 881, 902
HpaII	CCGG	6 cut(s)	165, 255, 297, 423, 477, 738
HphI	GGTGA	4 cut(s)	311, 368, 419, 473
Hpy188I	TCNGA	4 cut(s)	562, 607, 643, 886
Hpy188III	TCNNGA	4 cut(s)	659, 666, 704, 869
Hpy99I	CGWCG	4 cut(s)	369, 420, 474, 548
HpyAV	CCTTC	7 cut(s)	50, 163, 296, 404, 458, 560, 865
HpyCH4III	ACNGT	4 cut(s)	398, 506, 554, 632
HpyCH4IV	ACGT	5 cut(s)	250, 415, 469, 523, 638
HpyCH4V	TGCA	2 cut(s)	4, 749
HpyF10VI	GCNNNNNNNGC	8 cut(s)	276, 315, 324, 333, 384, 432, 688, 830
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	5 cut(s)	250, 415, 469, 523, 638
Hsp92I	GRCGYC	4 cut(s)	307, 415, 469, 638
Hsp92II	CATG	4 cut(s)	88, 791, 872, 911
KroI	GCCGGC	1 cut(s)	737
KroNI	GCCGGC	1 cut(s)	739
KspI	CCGCGG	1 cut(s)	619
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	3 cut(s)	348, 718, 721
LweI	GCATC	1 cut(s)	874
MaeI	CTAG	3 cut(s)	372, 513, 722
MaeII	ACGT	5 cut(s)	250, 415, 469, 523, 638
MaeIII	GTNAC	6 cut(s)	197, 233, 398, 506, 554, 659
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	615
MlyI	GAGTC	4 cut(s)	218, 656, 890, 911
Mph1103I	ATGCAT	2 cut(s)	6, 751
MroNI	GCCGGC	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	618
MspI	CCGG	6 cut(s)	165, 255, 297, 423, 477, 738
MspR9I	CCNGG	3 cut(s)	95, 125, 165
MvaI	CCWGG	2 cut(s)	95, 125
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	8 cut(s)	276, 315, 324, 333, 384, 432, 688, 830
NaeI	GCCGGC	1 cut(s)	739
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	175
NgoMIV	GCCGGC	1 cut(s)	737
NlaIII	CATG	4 cut(s)	88, 791, 872, 911
NlaIV	GGNNCC	3 cut(s)	578, 613, 614
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	2 cut(s)	6, 751
NspI	RCATGY	1 cut(s)	791
PaeI	GCATGC	1 cut(s)	791
PaeR7I	CTCGAG	1 cut(s)	704
PagI	TCATGA	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	739
PinAI	ACCGGT	1 cut(s)	476
PleI	GAGTC	4 cut(s)	218, 656, 889, 910
PpsI	GAGTC	4 cut(s)	218, 656, 889, 910
Psp6I	CCWGG	2 cut(s)	93, 123
PspGI	CCWGG	2 cut(s)	93, 123
PspN4I	GGNNCC	3 cut(s)	578, 613, 614
PspOMI	GGGCCC	1 cut(s)	611
PspPI	GGNCC	3 cut(s)	577, 611, 612
RsaI	GTAC	4 cut(s)	313, 421, 475, 526
RsaNI	GTAC	4 cut(s)	312, 420, 474, 525
SacII	CCGCGG	1 cut(s)	619
SapI	GCTCTTC	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	3 cut(s)	577, 611, 612
SchI	GAGTC	4 cut(s)	218, 656, 890, 911
ScrFI	CCNGG	3 cut(s)	95, 125, 165
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	1 cut(s)	874
Sfr274I	CTCGAG	1 cut(s)	704
Sfr303I	CCGCGG	1 cut(s)	619
SgrBI	CCGCGG	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	243, 704
SmoI	CTYRAG	2 cut(s)	243, 704
SphI	GCATGC	1 cut(s)	791
SspMI	CTAG	3 cut(s)	372, 513, 722
StyD4I	CCNGG	3 cut(s)	93, 123, 163
TaaI	ACNGT	4 cut(s)	398, 506, 554, 632
TaiI	ACGT	5 cut(s)	253, 418, 472, 526, 641
TaqI	TCGA	1 cut(s)	705
TscAI	CASTG	7 cut(s)	193, 217, 235, 346, 454, 598, 637
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	3 cut(s)	336, 731, 734
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	3 cut(s)	302, 513, 561
TspRI	CASTG	7 cut(s)	193, 217, 235, 346, 454, 598, 637
XceI	RCATGY	1 cut(s)	791
XhoI	CTCGAG	1 cut(s)	704
XspI	CTAG	3 cut(s)	372, 513, 722
ZraI	GACGTC	3 cut(s)	416, 470, 639
Zsp2I	ATGCAT	2 cut(s)	6, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.