Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

2328254 .. 2328955

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTGATCAGGAGCGGCACAGCCGTGGCCTCTTCTCCCGCCAAGGGGACGAAGAAGAGGACGATAAACCCTCATCCTACTCTCAGTCTCAGTCTGGTTACGGTGATCAACCCCGTTCTGGTGGTGCTTACGGCGACCCCACTACTGGTTACTCTTCCCAAGGACGTACCGGTGCCCGCAGCGGCAGCGGCTACGGTGACAGCACTGATTACTCTGGTGAAGGACGCAGTACTGGCGGAGGCAAAACTGATGATTACTCGGAAGAGGGACACGGAGGCCGTGCCGCGTACAGCGAGACCACAGCTTACTCTAGCGAAGGACGTCTTACCGGCGGAGGTGGCTACGGCGGGACCGGCAACACTGATAGTTACTCGGAAGAAGGACACGGAGGCCGGGCTACCGAGACCACTGCGTACTCTGGTGAAGGACGTCGTACTAGCGGCGGAGGTGGCTATGGCGGGGGAAGCACTGATGATTACTCGGAGGAAGGACACGGAGGGCGTCGCGGGTACAAAAAATCTGATGATGATGACTCGGAAGAAGGACACGGAGGGCGTGGCGGAGGAGGGTACAGCAAGGAAAGTGACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

20.21

Weight (kDa)

4.62

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	325, 433
AccB1I	GGYRCC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	16
AccII	CGCG	2 cut(s)	287, 507
AcyI	GRCGYC	3 cut(s)	322, 430, 502
AfaI	GTAC	7 cut(s)	169, 232, 290, 416, 436, 512, 572
AfiI	CCNNNNNNNGG	4 cut(s)	45, 46, 119, 146
AgeI	ACCGGT	1 cut(s)	170
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	3 cut(s)	93, 290, 398
AoxI	GGCC	3 cut(s)	28, 277, 391
ApeKI	GCWGC	2 cut(s)	180, 186
AsiGI	ACCGGT	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	116, 209, 230, 434
AvaII	GGWCC	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	192, 198
BceAI	ACGGC	4 cut(s)	9, 148, 264, 361
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BclI	TGATCA	2 cut(s)	7, 106
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	93, 290, 398
BfaI	CTAG	2 cut(s)	312, 438
BisI	GCNGC	7 cut(s)	17, 181, 184, 187, 190, 285, 442
BlsI	GCNGC	7 cut(s)	18, 182, 185, 188, 191, 286, 443
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	175, 352
BmrFI	CCNGG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	395
BsaHI	GRCGYC	3 cut(s)	322, 430, 502
BsaI	GGTCTC	2 cut(s)	290, 398
BsaJI	CCNNGG	3 cut(s)	25, 43, 160
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 46, 119, 146
Bse118I	RCCGGY	3 cut(s)	170, 329, 353
Bse1I	ACTGG	2 cut(s)	151, 238
BseDI	CCNNGG	3 cut(s)	25, 43, 160
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	4 cut(s)	45, 46, 119, 146
BseMII	CTCAG	2 cut(s)	98, 104
BseNI	ACTGG	2 cut(s)	151, 238
BseRI	GAGGAG	1 cut(s)	579
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	192, 198
Bsh1236I	CGCG	2 cut(s)	287, 507
BshFI	GGCC	3 cut(s)	30, 279, 393
BshNI	GGYRCC	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	170
BsiSI	CCGG	4 cut(s)	171, 330, 354, 394
BslFI	GGGAC	3 cut(s)	62, 282, 364
BslI	CCNNNNNNNGG	4 cut(s)	45, 46, 119, 146
BsmAI	GTCTC	3 cut(s)	93, 290, 398
BsmFI	GGGAC	3 cut(s)	62, 282, 364
BsnI	GGCC	3 cut(s)	30, 279, 393
Bso31I	GGTCTC	2 cut(s)	290, 398
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	7, 106
BspANI	GGCC	3 cut(s)	30, 279, 393
BspCNI	CTCAG	2 cut(s)	97, 103
BspFNI	CGCG	2 cut(s)	287, 507
BspLI	GGNNCC	2 cut(s)	175, 352
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	2 cut(s)	290, 398
BsrBI	CCGCTC	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	170, 329, 353
BsrI	ACTGG	2 cut(s)	151, 238
BssAI	RCCGGY	3 cut(s)	170, 329, 353
BssECI	CCNNGG	3 cut(s)	25, 43, 160
BssMI	GATC	2 cut(s)	7, 106
BssNI	GRCGYC	3 cut(s)	322, 430, 502
BssT1I	CCWWGG	2 cut(s)	43, 160
Bst4CI	ACNGT	2 cut(s)	104, 197
Bst6I	CTCTTC	4 cut(s)	38, 51, 160, 258
BstACI	GRCGYC	3 cut(s)	322, 430, 502
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	84, 90
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	2 cut(s)	287, 507
BstKTI	GATC	2 cut(s)	10, 109
BstMAI	GTCTC	3 cut(s)	93, 290, 398
BstMBI	GATC	2 cut(s)	7, 106
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 189, 234, 339, 354, 450, 465
BstSCI	CCNGG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	2 cut(s)	287, 507
BstV1I	GCAGC	2 cut(s)	192, 198
BsuRI	GGCC	3 cut(s)	30, 279, 393
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	204, 360, 408, 468
Cac8I	GCNNGC	1 cut(s)	178
Cfr10I	RCCGGY	3 cut(s)	170, 329, 353
Cfr13I	GGNCC	1 cut(s)	351
CseI	GACGC	2 cut(s)	234, 491
Csp6I	GTAC	7 cut(s)	168, 231, 289, 415, 435, 511, 571
CspAI	ACCGGT	1 cut(s)	170
CviQI	GTAC	7 cut(s)	168, 231, 289, 415, 435, 511, 571
DdeI	CTNAG	2 cut(s)	84, 90
DpnI	GATC	2 cut(s)	9, 108
DpnII	GATC	2 cut(s)	7, 106
Eam1104I	CTCTTC	4 cut(s)	38, 51, 160, 258
EarI	CTCTTC	4 cut(s)	38, 51, 160, 258
EciI	GGCGGA	4 cut(s)	252, 348, 459, 576
Eco130I	CCWWGG	2 cut(s)	43, 160
Eco31I	GGTCTC	2 cut(s)	290, 398
Eco47I	GGWCC	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	43, 160
ErhI	CCWWGG	2 cut(s)	43, 160
FaiI	YATR	1 cut(s)	456
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	3 cut(s)	62, 282, 364
FauI	CCCGC	5 cut(s)	47, 185, 341, 452, 500
FbaI	TGATCA	2 cut(s)	7, 106
Fnu4HI	GCNGC	7 cut(s)	17, 181, 184, 187, 190, 285, 442
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	7 cut(s)	17, 181, 184, 187, 190, 285, 442
FspBI	CTAG	2 cut(s)	312, 438
GluI	GCNGC	7 cut(s)	17, 181, 184, 187, 190, 285, 442
HaeIII	GGCC	3 cut(s)	30, 279, 393
HapII	CCGG	4 cut(s)	171, 330, 354, 394
HgaI	GACGC	2 cut(s)	234, 491
Hin1I	GRCGYC	3 cut(s)	322, 430, 502
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	4 cut(s)	171, 330, 354, 394
HphI	GGTGA	4 cut(s)	116, 209, 230, 434
Hpy188I	TCNGA	5 cut(s)	262, 376, 484, 523, 538
Hpy188III	TCNNGA	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	435, 507
HpyAV	CCTTC	6 cut(s)	215, 311, 374, 419, 482, 536
HpyCH4III	ACNGT	2 cut(s)	104, 197
HpyCH4IV	ACGT	3 cut(s)	166, 322, 430
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 189, 234, 339, 354, 450, 465
HpyF3I	CTNAG	2 cut(s)	84, 90
HpySE526I	ACGT	3 cut(s)	166, 322, 430
Hsp92I	GRCGYC	3 cut(s)	322, 430, 502
Ksp22I	TGATCA	2 cut(s)	7, 106
Kzo9I	GATC	2 cut(s)	7, 106
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	2 cut(s)	192, 198
MaeI	CTAG	2 cut(s)	312, 438
MaeII	ACGT	3 cut(s)	166, 322, 430
MaeIII	GTNAC	5 cut(s)	98, 149, 197, 368, 584
MalI	GATC	2 cut(s)	9, 108
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	2 cut(s)	7, 106
MboII	GAAGA	7 cut(s)	25, 65, 68, 147, 275, 389, 551
MhlI	GDGCHC	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	527
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	183, 189
MspI	CCGG	4 cut(s)	171, 330, 354, 394
MspR9I	CCNGG	1 cut(s)	395
MvnI	CGCG	2 cut(s)	287, 507
MwoI	GCNNNNNNNGC	7 cut(s)	186, 189, 234, 339, 354, 450, 465
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	7, 106
NlaIV	GGNNCC	2 cut(s)	175, 352
NmuCI	GTSAC	2 cut(s)	197, 584
OliI	CACNNNNGTG	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	7 cut(s)	18, 182, 185, 188, 191, 286, 443
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	175, 352
PspPI	GGNCC	1 cut(s)	351
RsaI	GTAC	7 cut(s)	169, 232, 290, 416, 436, 512, 572
RsaNI	GTAC	7 cut(s)	168, 231, 289, 415, 435, 511, 571
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	7 cut(s)	17, 181, 184, 187, 190, 285, 442
Sau3AI	GATC	2 cut(s)	7, 106
Sau96I	GGNCC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	6 cut(s)	169, 307, 325, 340, 433, 451
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	24
SspMI	CTAG	2 cut(s)	312, 438
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	43, 160
TaaI	ACNGT	2 cut(s)	104, 197
TaiI	ACGT	3 cut(s)	169, 325, 433
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	5 cut(s)	19, 186, 192, 287, 444
TscAI	CASTG	4 cut(s)	211, 367, 415, 475
TseFI	GTSAC	2 cut(s)	197, 584
TseI	GCWGC	2 cut(s)	180, 186
Tsp45I	GTSAC	2 cut(s)	197, 584
TspGWI	ACGGA	4 cut(s)	288, 402, 510, 564
TspRI	CASTG	4 cut(s)	211, 367, 415, 475
VpaK11BI	GGWCC	1 cut(s)	351
XspI	CTAG	2 cut(s)	312, 438
ZraI	GACGTC	2 cut(s)	323, 431
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.