Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Forward (+)

1981981 .. 1983050

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCGGAAGAGAAGCAACACCACGGTCTCTTCCACCACCACAAGGATGAAGACAAACCCTCAGACTACCCTCAGTCTGATGGCTATAGCGAGAACACTGAGACATATGGCGCCACCACCACTCTTGAACCTGAAATTAATTACAATAAAGAGAAGAAGCACCACAAGCATCTCGAGCACCTGGACGAGGCCGGTGTTGTTGCTGCCGGCGGTTATGCCTTGCATGAGAAGCACAAGGCAAAGAAAGACCCAGAGCATGCCCACAAGCACAAGATAGAAGAGGAGATTGCTGCAGCAGCTGCAGTTGGTGCCGGTGGATTTGCCTTCCATGAGCATCATGAGAAGAAAGAGACAAAGAAAGAAGAGGAAGAGGCTCATGGAAAGAAGAATCACCACCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

135

Amino Acids

15.27

Weight (kDa)

6.1

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	110, 308
AciI	CCGC	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	43, 187
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	32, 95, 344
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	5 cut(s)	203, 290, 293, 296, 299
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	110, 308
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	5 cut(s)	190, 277, 286, 305, 308
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	32, 95, 344
BfaI	CTAG	1 cut(s)	403
BfmI	CTRYAG	3 cut(s)	85, 291, 300
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	5 cut(s)	204, 291, 294, 297, 300
BlsI	GCNGC	5 cut(s)	205, 292, 295, 298, 301
Bme1390I	CCNGG	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	112, 310
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	178, 343
BpiI	GAAGAC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 187
Bse118I	RCCGGY	3 cut(s)	191, 206, 311
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	43, 187
BseMII	CTCAG	3 cut(s)	75, 86, 90
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	5 cut(s)	190, 277, 286, 305, 308
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	2 cut(s)	110, 308
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	192, 207, 312
BslI	CCNNNNNNNGG	2 cut(s)	43, 187
BsmAI	GTCTC	3 cut(s)	32, 95, 344
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	74, 85, 91
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	112, 310
BspMAI	CTGCAG	2 cut(s)	295, 304
BspT107I	GGYRCC	2 cut(s)	110, 308
BspTNI	GGTCTC	1 cut(s)	32
BsrFI	RCCGGY	3 cut(s)	191, 206, 311
BssAI	RCCGGY	3 cut(s)	191, 206, 311
BssECI	CCNNGG	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	5 cut(s)	3, 35, 273, 357, 363
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	299, 308
BstC8I	GCNNGC	2 cut(s)	208, 258
BstDEI	CTNAG	3 cut(s)	61, 72, 99
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstMAI	GTCTC	3 cut(s)	32, 95, 344
BstMWI	GCNNNNNNNGC	6 cut(s)	166, 175, 229, 296, 299, 308
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	3 cut(s)	85, 291, 300
BstV1I	GCAGC	5 cut(s)	190, 277, 286, 305, 308
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	208, 258
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	3 cut(s)	191, 206, 311
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	5 cut(s)	224, 257, 329, 338, 377
CviJI	RGCY	4 cut(s)	84, 191, 299, 374
CviKI_1	RGCY	4 cut(s)	84, 191, 299, 374
DdeI	CTNAG	3 cut(s)	61, 72, 99
DinI	GGCGCC	1 cut(s)	112
Eam1104I	CTCTTC	5 cut(s)	3, 35, 273, 357, 363
EarI	CTCTTC	5 cut(s)	3, 35, 273, 357, 363
Eco31I	GGTCTC	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	180
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
FaeI	CATG	5 cut(s)	227, 260, 332, 341, 380
FaiI	YATR	9 cut(s)	87, 106, 108, 216, 225, 258, 330, 339, 378
FatI	CATG	5 cut(s)	223, 256, 328, 337, 376
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	204, 291, 294, 297, 300
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	204, 291, 294, 297, 300
FspBI	CTAG	1 cut(s)	403
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	5 cut(s)	204, 291, 294, 297, 300
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	192, 207, 312
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	227, 260, 332, 341, 380
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	3 cut(s)	192, 207, 312
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	7, 64, 79
Hpy188III	TCNNGA	3 cut(s)	125, 173, 338
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	223, 293, 302
HpyF10VI	GCNNNNNNNGC	6 cut(s)	166, 175, 229, 296, 299, 308
HpyF3I	CTNAG	3 cut(s)	61, 72, 99
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	227, 260, 332, 341, 380
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
LpnPI	CCDG	7 cut(s)	144, 167, 194, 205, 220, 264, 325
Lsp1109I	GCAGC	5 cut(s)	190, 277, 286, 305, 308
LweI	GCATC	2 cut(s)	178, 343
MaeI	CTAG	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	135, 139
Mly113I	GGCGCC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	70, 81, 181, 274, 358, 364
MroNI	GCCGGC	1 cut(s)	206
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	3 cut(s)	192, 207, 312
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	6 cut(s)	166, 175, 229, 296, 299, 308
NaeI	GCCGGC	1 cut(s)	208
NarI	GGCGCC	1 cut(s)	111
NdeI	CATATG	1 cut(s)	106
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	5 cut(s)	227, 260, 332, 341, 380
NlaIV	GGNNCC	2 cut(s)	112, 310
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	5 cut(s)	205, 292, 295, 298, 301
PluTI	GGCGCC	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	112, 310
PstI	CTGCAG	2 cut(s)	295, 304
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	5 cut(s)	204, 291, 294, 297, 300
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	133, 183, 301, 399
SfaNI	GCATC	2 cut(s)	178, 343
SfcI	CTRYAG	3 cut(s)	85, 291, 300
SfoI	GGCGCC	1 cut(s)	112
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	2 cut(s)	135, 139
SsiI	CCGC	1 cut(s)	210
SspDI	GGCGCC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	135, 139
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	5 cut(s)	203, 290, 293, 296, 299
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	185
XceI	RCATGY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.