Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Reverse (-)

34415036 .. 34416624

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCTGAGGAGAAGCACCACCACGGCCTCTTCCACCACCACAAGGACAACGAGGACAGACCCCTAGAAACCTCCGCCTACGAATCTCAGACCGCTTACGGAGGCGGCGGCTACAGCGAGACCACCGGTTATTCCGCTGAGGGAGAGGGTGGCAGGTACAACAGTGAGACCACCGACGCGTATGGCTCAGCTGCTCCCGGCGGTGGCCGATACACCAGCGAGACCACTGGTTACGTCAAGGAGGGACATGGTGGCAAGTACAGCGAGACCACCACCCAAGGTTATGGCACCACTGAGTCTGGAATCGATTACAAGAAGGAGGAGAAGCACCATAAACATCTCGAGCAACTCGGCGAGCTCGGTGCAGCTGCTGCTGGAGCTTATGCTTTGCATGAGAAGCATAAGGAAAAGAAAGACCCAGAGCATGCCCACAAGCACAAGATAGAAGAGGAGATCGCTGCAGTGGCTGCAGTTGGATCCGGTGGGTTCGCCTTCCACGAGCACCATGAAAAGAAAGAGACCAAGGAAGAAGAGGAAGAGGCTCATGGAAAGAAGCACCACCATCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

190

Amino Acids

20.89

Weight (kDa)

5.84

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA_WDS	PF02496	103 - 180	4.7e-36	ABA/WDS induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	287
AccII	CGCG	1 cut(s)	179
AciI	CCGC	6 cut(s)	75, 93, 105, 108, 135, 201
AclWI	GGATC	2 cut(s)	471, 484
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	2 cut(s)	158, 260
AfiI	CCNNNNNNNGG	2 cut(s)	43, 203
AflIII	ACRYGT	1 cut(s)	177
AgeI	ACCGGT	1 cut(s)	125
AluBI	AGCT	4 cut(s)	191, 358, 368, 380
AluI	AGCT	4 cut(s)	191, 358, 368, 380
Alw21I	GWGCWC	2 cut(s)	360, 504
Alw26I	GTCTC	5 cut(s)	113, 161, 215, 260, 512
AlwI	GGATC	2 cut(s)	471, 484
AlwNI	CAGNNNCTG	2 cut(s)	371, 467
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	25, 205
ApeKI	GCWGC	6 cut(s)	191, 365, 368, 371, 458, 467
AsiGI	ACCGGT	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	341
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BamHI	GGATCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	360, 504
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
BccI	CCATC	1 cut(s)	570
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	5 cut(s)	113, 161, 215, 260, 512
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	3 cut(s)	112, 459, 468
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	8 cut(s)	107, 110, 193, 367, 370, 373, 460, 469
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	289, 478
BmrFI	CCNGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	306
BsaI	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
BsaJI	CCNNGG	3 cut(s)	22, 277, 522
BsaWI	WCCGGW	2 cut(s)	125, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 203
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	22, 277, 522
BseLI	CCNNNNNNNGG	2 cut(s)	43, 203
BseMII	CTCAG	4 cut(s)	101, 129, 201, 285
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	3 cut(s)	23, 335, 464
BseXI	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	27, 207
BshNI	GGYRCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	360, 504
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	126, 198, 480
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	43, 203
BsmAI	GTCTC	5 cut(s)	113, 161, 215, 260, 512
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	27, 207
Bso31I	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	360, 504
Bsp143I	GATC	2 cut(s)	453, 476
Bsp1720I	GCTNAGC	1 cut(s)	187
BspACI	CCGC	6 cut(s)	75, 93, 105, 108, 135, 201
BspANI	GGCC	2 cut(s)	27, 207
BspCNI	CTCAG	4 cut(s)	100, 130, 200, 286
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	289, 478
BspMAI	CTGCAG	2 cut(s)	463, 472
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	471, 484
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	22, 277, 522
BssMI	GATC	2 cut(s)	453, 476
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	2 cut(s)	277, 522
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	4 cut(s)	35, 441, 525, 531
BstAPI	GCANNNNNTGC	2 cut(s)	371, 467
BstC8I	GCNNGC	2 cut(s)	356, 426
BstDEI	CTNAG	5 cut(s)	6, 87, 138, 187, 294
BstDSI	CCRYGG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	456, 479
BstMAI	GTCTC	5 cut(s)	113, 161, 215, 260, 512
BstMBI	GATC	2 cut(s)	453, 476
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 261, 371, 377, 397, 464, 467
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	3 cut(s)	112, 459, 468
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	27, 207
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	4 cut(s)	169, 225, 291, 468
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	356, 426
CaiI	CAGNNNCTG	2 cut(s)	371, 467
Cfr10I	RCCGGY	1 cut(s)	125
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	157, 259
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	5 cut(s)	248, 392, 425, 506, 545
CviQI	GTAC	2 cut(s)	157, 259
DdeI	CTNAG	5 cut(s)	6, 87, 138, 187, 294
DpnI	GATC	2 cut(s)	455, 478
DpnII	GATC	2 cut(s)	453, 476
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	4 cut(s)	35, 441, 525, 531
EarI	CTCTTC	4 cut(s)	35, 441, 525, 531
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	277, 522
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
Eco53kI	GAGCTC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	277, 522
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	2 cut(s)	277, 522
FaeI	CATG	5 cut(s)	251, 395, 428, 509, 548
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	5 cut(s)	247, 391, 424, 505, 544
Fnu4HI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	27, 207
HapII	CCGG	3 cut(s)	126, 198, 480
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	5 cut(s)	251, 395, 428, 509, 548
HinfI	GANTC	3 cut(s)	83, 296, 303
HpaII	CCGG	3 cut(s)	126, 198, 480
Hpy188I	TCNGA	2 cut(s)	7, 90
Hpy188III	TCNNGA	2 cut(s)	300, 341
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	310, 502
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	365, 391, 461, 470
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 261, 371, 377, 397, 464, 467
HpyF3I	CTNAG	5 cut(s)	6, 87, 138, 187, 294
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	5 cut(s)	251, 395, 428, 509, 548
Kzo9I	GATC	2 cut(s)	453, 476
LmnI	GCTCC	2 cut(s)	199, 377
LpnPI	CCDG	9 cut(s)	139, 139, 211, 213, 229, 285, 360, 432, 493
Lsp1109I	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	455, 478
MboI	GATC	2 cut(s)	453, 476
MboII	GAAGA	6 cut(s)	22, 458, 539, 542, 548, 559
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	360, 504
MluI	ACGCGT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	454
MspA1I	CMGCKG	3 cut(s)	137, 191, 368
MspI	CCGG	3 cut(s)	126, 198, 480
MspR9I	CCNGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	7 cut(s)	114, 261, 371, 377, 397, 464, 467
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	453, 476
NlaIII	CATG	5 cut(s)	251, 395, 428, 509, 548
NlaIV	GGNNCC	2 cut(s)	289, 478
NmeAIII	GCCGAG	1 cut(s)	330
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	83, 303
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	8 cut(s)	107, 110, 193, 367, 370, 373, 460, 469
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	289, 478
PstI	CTGCAG	2 cut(s)	463, 472
PstNI	CAGNNNCTG	2 cut(s)	371, 467
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	2 cut(s)	191, 368
RsaI	GTAC	2 cut(s)	158, 260
RsaNI	GTAC	2 cut(s)	157, 259
SacI	GAGCTC	1 cut(s)	360
SatI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
Sau3AI	GATC	2 cut(s)	453, 476
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	360, 504
SetI	ASST	8 cut(s)	74, 158, 193, 237, 283, 360, 370, 382
SfcI	CTRYAG	3 cut(s)	112, 459, 468
Sfr274I	CTCGAG	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	428
SsiI	CCGC	6 cut(s)	75, 93, 105, 108, 135, 201
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	277, 522
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	306, 342
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	2 cut(s)	108, 111
TfiI	GAWTC	2 cut(s)	83, 303
TscAI	CASTG	4 cut(s)	169, 232, 298, 468
TseI	GCWGC	6 cut(s)	191, 365, 368, 371, 458, 467
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	169, 232, 298, 468
XceI	RCATGY	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	341
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.