RchiOBHm_Chr6g0274971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004221
Physical Location & Seq
Reverse (-)
36555926 .. 36557272
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24669

Sequence Viewer

Length: 438 bp
ATGGCTCAGCTGCTCCCGGAGGTGGCCGATGCACCAGCGAGACCACTGGTTACGTCAAGGAGGGACACGGTGGCAAGTACAGCGAGACCAGAACCGAAGCTTATGGCACCACTGAATCCGGAATCGATTACAAGAAGGAGGAGAAGCACCACAAACATCTCGAAGAACTCGGCGGGCTCGGTGCTGCTGCTGCTGGAGCTTATGCTTTGCATGAGAAGCATAAGGCAAAGAAAGACCCGGAGCATGCCCACAGGCACAAGATTGAAGAGGAGATCGCTGCAGTGGCTGCAGTTGGAGCCGGTGGGTTCGCCTTCCACGAGCACCATGAGAAGAAAGAGGCGAAGAAAGAGGCGAAGAAAGAAGAGGAAGAGGCTCATGGAAAGAAGCACCACCATCTCTTCTAAAACCCAGCTTCCGATGATCTCCATCAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.72

Weight (kDa)

12.0

Isoelectric Point (pI)

109.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 24
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 4 cut(s) 10, 100, 199, 412
AluI AGCT 4 cut(s) 10, 100, 199, 412
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 34, 79
AlwNI CAGNNNCTG 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 6 cut(s) 10, 184, 187, 190, 277, 286
AsuC2I CCSGG 2 cut(s) 17, 238
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 5 cut(s) 171, 174, 177, 264, 273
BccI CCATC 2 cut(s) 401, 434
BcnI CCSGG 2 cut(s) 17, 238
BcoDI GTCTC 2 cut(s) 34, 79
BfmI CTRYAG 2 cut(s) 278, 287
BisI GCNGC 6 cut(s) 11, 185, 188, 191, 278, 287
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 6 cut(s) 12, 186, 189, 192, 279, 288
Bme1390I CCNGG 2 cut(s) 17, 238
BmiI GGNNCC 2 cut(s) 108, 297
BmrFI CCNGG 2 cut(s) 17, 238
BmsI GCATC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 6
BpuMI CCSGG 2 cut(s) 17, 238
Bsa29I ATCGAT 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 425
BsaI GGTCTC 2 cut(s) 34, 79
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 154, 283
BseXI GCAGC 5 cut(s) 171, 174, 177, 264, 273
BseYI CCCAGC 1 cut(s) 408
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 4 cut(s) 17, 119, 238, 299
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 34, 79
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 2 cut(s) 34, 79
Bsp1286I GDGCHC 2 cut(s) 179, 323
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 272, 420
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 125
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 108, 297
BspMAI CTGCAG 2 cut(s) 282, 291
BspT107I GGYRCC 1 cut(s) 106
BspTNI GGTCTC 2 cut(s) 34, 79
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 298
BssMI GATC 2 cut(s) 272, 420
BssSI CACGAG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 4 cut(s) 260, 356, 362, 403
BstAPI GCANNNNNTGC 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 175, 245
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 2 cut(s) 275, 423
BstMAI GTCTC 2 cut(s) 34, 79
BstMBI GATC 2 cut(s) 272, 420
BstMWI GCNNNNNNNGC 7 cut(s) 80, 190, 196, 216, 283, 286, 295
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 15, 236
BstSFI CTRYAG 2 cut(s) 278, 287
BstV1I GCAGC 5 cut(s) 171, 174, 177, 264, 273
Bsu15I ATCGAT 1 cut(s) 125
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 44, 110, 287
Cac8I GCNNGC 2 cut(s) 175, 245
CaiI CAGNNNCTG 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 125
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 211, 244, 325, 376
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 274, 422
DpnII GATC 2 cut(s) 272, 420
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 4 cut(s) 260, 356, 362, 403
EarI CTCTTC 4 cut(s) 260, 356, 362, 403
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 2 cut(s) 34, 79
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 4 cut(s) 214, 247, 328, 379
FaiI YATR 7 cut(s) 104, 203, 212, 221, 245, 326, 377
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 210, 243, 324, 375
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 6 cut(s) 11, 185, 188, 191, 278, 287
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 6 cut(s) 11, 185, 188, 191, 278, 287
GluI GCNGC 6 cut(s) 11, 185, 188, 191, 278, 287
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 26
HapII CCGG 4 cut(s) 17, 119, 238, 299
Hin1II CATG 4 cut(s) 214, 247, 328, 379
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 115, 122
HpaII CCGG 4 cut(s) 17, 119, 238, 299
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 2 cut(s) 119, 160
HpyAV CCTTC 2 cut(s) 129, 321
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 32, 210, 280, 289
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 190, 196, 216, 283, 286, 295
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 4 cut(s) 214, 247, 328, 379
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 272, 420
LmnI GCTCC 4 cut(s) 18, 196, 240, 295
Lsp1109I GCAGC 5 cut(s) 171, 174, 177, 264, 273
LweI GCATC 1 cut(s) 19
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 274, 422
MboI GATC 2 cut(s) 272, 420
MboII GAAGA 8 cut(s) 175, 277, 342, 354, 366, 373, 379, 390
MhlI GDGCHC 2 cut(s) 179, 323
MluCI AATT 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 8 cut(s) 13, 54, 132, 261, 330, 342, 357, 363
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 4 cut(s) 17, 119, 238, 299
MspR9I CCNGG 2 cut(s) 17, 238
MwoI GCNNNNNNNGC 7 cut(s) 80, 190, 196, 216, 283, 286, 295
NciI CCSGG 2 cut(s) 17, 238
NdeII GATC 2 cut(s) 272, 420
NlaIII CATG 4 cut(s) 214, 247, 328, 379
NlaIV GGNNCC 2 cut(s) 108, 297
NmeAIII GCCGAG 1 cut(s) 149
NspI RCATGY 1 cut(s) 247
PaeI GCATGC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PfeI GAWTC 2 cut(s) 115, 122
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 6 cut(s) 12, 186, 189, 192, 279, 288
PspFI CCCAGC 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 108, 297
PstI CTGCAG 2 cut(s) 282, 291
PstNI CAGNNNCTG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 6 cut(s) 11, 185, 188, 191, 278, 287
Sau3AI GATC 2 cut(s) 272, 420
ScrFI CCNGG 2 cut(s) 17, 238
SduI GDGCHC 2 cut(s) 179, 323
SetI ASST 6 cut(s) 12, 24, 56, 102, 201, 414
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 2 cut(s) 278, 287
SphI GCATGC 1 cut(s) 247
Sse9I AATT 1 cut(s) 433
SsiI CCGC 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 15, 236
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 125, 161
TasI AATT 1 cut(s) 433
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 2 cut(s) 115, 122
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 3 cut(s) 51, 117, 287
TseI GCWGC 6 cut(s) 10, 184, 187, 190, 277, 286
TspRI CASTG 3 cut(s) 51, 117, 287
XceI RCATGY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.