Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004437

Physical Location & Seq

Genomic Coordinates Reverse (-)

11782009 .. 11783699

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCAAAGAGAGAATACTTTTGGGGCATTTACAGAGTGCAGAGCATTCTTGCAGCAAGTCTTCTTCGCAATAGATCATCTTGCGCTACTCACTTGTCAAATGGTCGTCCAGGACGTGAGGTTTCAGCTATGACAGTAGTATCGAATACAATTGGGCCTCGTGCTTATCCGACCAATAATGCATTAGGCTTGCGGTTATTTAGCAGCACCAGCAACAAACCATGTACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTAGGCAGACCATCTCTACTTGGGTAAGATGGATTTTCGGCTCGCTTTTGTCAATTTTGATCCCCTTTTGGACGCACAAGTACTGGAGAAATCTGCAAATGATTGAAGGGGAGGCAGAGGTGGTGATGGAAGAAGTTGACAATGTAGCAAAAGATGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCAGAAAAACTTCCAACTCATACAAAACTAAAGCAAATTGCTTTGCTAATTGAACGCGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAACAATTTATTCACAAGGTGGATGCACTGAAGGAAGACTTGGAAGACTTGGAGAAACTAGTGAAGCCAGCTGTTAATAAGATTGAAAACTATGAATTCCAAGGAAACTACTCACCAGCTCAATTAAAAGAGCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.98

Weight (kDa)

8.46

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14095 AT2G14095
fragaria_vesca	FvH4_2g13500
malus_domestica	MD05G1054900.v1.1
prunus_persica	Prupe.8G066300_v2.0.a1
pyrus_communis	pycom05g04540
rosa_chinensis	RchiOBHm_Chr7g0236611
rosa_laevigata	RLG00000000991 RLG00000001072 RLG00000001109 RLG00000001121 RLG00000001933 RLG00000030013
rosa_multiflora	Rmu_sc0002536.1_g000011 Rmu_sc0008183.1_g000027
rosa_roxburghii	Rroxscaffold_3G00225030 Rroxscaffold_3G00225410
rosa_rugosa	Rorug01G0145400.1 Rorug07G0273600 Rorug07G0273700 Rorug07G0293900 Rorug07G0295100 Rorug07G0297900
rosa_samantha	Rh1BG129000 Rh7AG434500 Rh7AG449300 Rh7AG452300 Rh7BG401200 Rh7DG438100
rosa_wichuraiana	Rw0G020660 Rw7G037320 Rw7G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	516
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	602
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	2 cut(s)	226, 341
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	365, 512, 638
AhlI	ACTAGT	1 cut(s)	610
AjiI	CACGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	3 cut(s)	128, 623, 671
AluI	AGCT	3 cut(s)	128, 623, 671
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	53, 204, 530
ApoI	RAATTY	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	394, 657
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	3 cut(s)	53, 594, 603
BbvI	GCAGC	3 cut(s)	65, 216, 517
BccI	CCATC	3 cut(s)	278, 282, 379
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	529
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	2 cut(s)	261, 611
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	54, 205, 531
BlsI	GCNGC	3 cut(s)	55, 206, 532
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	529, 565
BpiI	GAAGAC	3 cut(s)	53, 594, 603
BpmI	CTGGAG	1 cut(s)	364
BpuEI	CTTGAG	2 cut(s)	254, 519
BsaJI	CCNNGG	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	347, 531
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	347, 531
BseXI	GCAGC	3 cut(s)	65, 216, 517
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	74, 318
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	516
BspPI	GGATC	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	347, 531
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	2 cut(s)	74, 318
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	136, 433
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	191, 249, 302, 621
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	77, 321
BstMBI	GATC	2 cut(s)	74, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 244, 434, 458, 539
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	65, 216, 517
BstV2I	GAAGAC	3 cut(s)	53, 594, 603
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 578
Cac8I	GCNNGC	4 cut(s)	191, 249, 302, 621
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	225, 340
CviAII	CATG	1 cut(s)	222
CviQI	GTAC	2 cut(s)	225, 340
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	76, 320
DpnII	GATC	2 cut(s)	74, 318
DraIII	CACNNNGTG	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	1 cut(s)	225
FaiI	YATR	4 cut(s)	131, 223, 480, 645
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	3 cut(s)	54, 205, 531
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	3 cut(s)	54, 205, 531
FspBI	CTAG	2 cut(s)	261, 611
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	54, 205, 531
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	157
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HphI	GGTGA	2 cut(s)	394, 657
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	171, 523
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	3 cut(s)	359, 436, 577
HpyCH4III	ACNGT	2 cut(s)	136, 433
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	40, 53, 182, 355, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 244, 434, 458, 539
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	225
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	74, 318
LpnPI	CCDG	8 cut(s)	96, 123, 223, 261, 328, 512, 633, 681
Lsp1109I	GCAGC	3 cut(s)	65, 216, 517
LweI	GCATC	2 cut(s)	529, 565
MaeI	CTAG	2 cut(s)	261, 611
MaeII	ACGT	1 cut(s)	115
MalI	GATC	2 cut(s)	76, 320
MboI	GATC	2 cut(s)	74, 318
MboII	GAAGA	5 cut(s)	53, 56, 401, 599, 608
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	8 cut(s)	150, 312, 495, 507, 557, 647, 674, 688
MluI	ACGCGT	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	194, 497
MnlI	CCTC	4 cut(s)	112, 168, 364, 370
Mph1103I	ATGCAT	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	3 cut(s)	627, 677, 691
MspA1I	CMGCKG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	5 cut(s)	210, 244, 434, 458, 539
NdeII	GATC	2 cut(s)	74, 318
NlaIII	CATG	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	468
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	55, 206, 532
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	226, 341
RsaNI	GTAC	2 cut(s)	225, 340
SaqAI	TTAA	3 cut(s)	627, 677, 691
SatI	GCNGC	3 cut(s)	54, 205, 531
Sau3AI	GATC	2 cut(s)	74, 318
Sau96I	GGNCC	1 cut(s)	155
ScaI	AGTACT	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	8 cut(s)	118, 123, 130, 381, 447, 573, 625, 673
SfaNI	GCATC	2 cut(s)	529, 565
SmlI	CTYRAG	2 cut(s)	233, 534
SmoI	CTYRAG	2 cut(s)	233, 534
SpeI	ACTAGT	1 cut(s)	610
Sse9I	AATT	8 cut(s)	150, 312, 495, 507, 557, 647, 674, 688
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	261, 611
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	2 cut(s)	136, 433
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	143
TasI	AATT	8 cut(s)	150, 312, 495, 507, 557, 647, 674, 688
TatI	WGTACW	2 cut(s)	224, 339
Tru1I	TTAA	3 cut(s)	627, 677, 691
Tru9I	TTAA	3 cut(s)	627, 677, 691
TscAI	CASTG	2 cut(s)	249, 585
TseI	GCWGC	3 cut(s)	53, 204, 530
TspDTI	ATGAA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	249, 585
XapI	RAATTY	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	261, 611
ZrmI	AGTACT	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.