Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002536.1

Orthogroup ID

OG0004437

Physical Location & Seq

Genomic Coordinates Reverse (-)

23572 .. 25456

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002536.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggatggatggatcgaatctgaagtgggaaactatggatggatgggtgtaggggaggcagaggtggtgatggaagaggttgacaatgtagcaaaagtcgtagaaagagtggcaactgtggctgagaaggtgtcagccgatgtggctgataaacttccaactaatcatacaagactaaaagaaattgctttgctgattgaacgagtatccgaactggctgctcaagatgctcaactaacacaagattttattcacaagctgcagaagatggagtccatgccgataattgctgaaggtaagccaatgtatgttgtcgagctagtgttcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

4.52

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14095 AT2G14095
fragaria_vesca	FvH4_2g13500
malus_domestica	MD05G1054900.v1.1
prunus_persica	Prupe.8G066300_v2.0.a1
pyrus_communis	pycom05g04540
rosa_chinensis	RchiOBHm_Chr7g0236611
rosa_laevigata	RLG00000000991 RLG00000001072 RLG00000001109 RLG00000001121 RLG00000001933 RLG00000030013
rosa_multiflora	Rmu_sc0002536.1_g000011 Rmu_sc0008183.1_g000027
rosa_roxburghii	Rroxscaffold_3G00225030 Rroxscaffold_3G00225410
rosa_rugosa	Rorug01G0145400.1 Rorug07G0273600 Rorug07G0273700 Rorug07G0293900 Rorug07G0295100 Rorug07G0297900
rosa_samantha	Rh1BG129000 Rh7AG434500 Rh7AG449300 Rh7AG452300 Rh7BG401200 Rh7DG438100
rosa_wichuraiana	Rw0G020660 Rw7G037320 Rw7G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	42, 312
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	2 cut(s)	259, 319
AluI	AGCT	2 cut(s)	259, 319
AlwI	GGATC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	218, 259
AsuHPI	GGTGA	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	205, 246
BccI	CCATC	5 cut(s)	3, 33, 37, 64, 262
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciVI	GTATCC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	219, 260
BlsI	GCNGC	2 cut(s)	220, 261
BmsI	GCATC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	219
BseGI	GGATG	4 cut(s)	10, 14, 44, 48
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	205, 246
Bsp143I	GATC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	4 cut(s)	10, 14, 44, 48
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 143, 227
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	205, 246
BsuI	GTATCC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	10, 14, 44, 48
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	7 cut(s)	122, 137, 146, 218, 259, 301, 319
CviKI_1	RGCY	7 cut(s)	122, 137, 146, 218, 259, 301, 319
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	42, 312
FaeI	CATG	1 cut(s)	280
FaiI	YATR	6 cut(s)	36, 168, 278, 309, 329, 331
FatI	CATG	1 cut(s)	276
FauNDI	CATATG	1 cut(s)	329
Fnu4HI	GCNGC	2 cut(s)	219, 260
FokI	GGATG	4 cut(s)	17, 21, 51, 55
Fsp4HI	GCNGC	2 cut(s)	219, 260
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	2 cut(s)	219, 260
Hin1II	CATG	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	17, 272
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	22, 211
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	121, 287
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 143, 227
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	205, 246
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	320
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	86, 277
MluCI	AATT	2 cut(s)	183, 285
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	49, 55, 70
MwoI	GCNNNNNNNGC	3 cut(s)	119, 143, 227
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	220, 261
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	264
SatI	GCNGC	2 cut(s)	219, 260
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	281
SetI	ASST	6 cut(s)	66, 81, 132, 261, 298, 321
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	260
SgeI	CNNG	8 cut(s)	183, 215, 227, 236, 254, 268, 289, 328
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	183, 285
SspMI	CTAG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	15, 315
TasI	AATT	2 cut(s)	183, 285
TfiI	GAWTC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	218, 259
TspDTI	ATGAA	1 cut(s)	316
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.