Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008183.1

Orthogroup ID

OG0004437

Physical Location & Seq

Genomic Coordinates Forward (+)

99445 .. 100168

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008183.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 485 bp

atggcaaaaagagaatatttttggggcatttacaaattccggagcattcttggagcaactcttcatcgcaatagaacatcctgcactacctacttgtctaatggtcgtcaaggacatgaggtttctgctccgacagtagtatcaaatatgtttgggcatcgtggttattcggcgaataatcccttaggcttgcggttatttagcagcaccagcaagaaaccatggacaaaacttgagcaaccactgcctgctacaacttcttctaggcacaccatccctaattgggtaagatggattttgggctcccttttgtcaattttgattcctgtttggacgcacaagtactggggaaatctgcaaaagcttgaaggggaggcagaggtggtgatggaagaggttgacagcgtagcaaaagtcgtagaaagagtggcaactgtggctgagaaggtgtcagccgatgtagctgataaacttccaactaatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

9.71

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14095 AT2G14095
fragaria_vesca	FvH4_2g13500
malus_domestica	MD05G1054900.v1.1
prunus_persica	Prupe.8G066300_v2.0.a1
pyrus_communis	pycom05g04540
rosa_chinensis	RchiOBHm_Chr7g0236611
rosa_laevigata	RLG00000000991 RLG00000001072 RLG00000001109 RLG00000001121 RLG00000001933 RLG00000030013
rosa_multiflora	Rmu_sc0002536.1_g000011 Rmu_sc0008183.1_g000027
rosa_roxburghii	Rroxscaffold_3G00225030 Rroxscaffold_3G00225410
rosa_rugosa	Rorug01G0145400.1 Rorug07G0273600 Rorug07G0273700 Rorug07G0293900 Rorug07G0295100 Rorug07G0297900
rosa_samantha	Rh1BG129000 Rh7AG434500 Rh7AG449300 Rh7AG452300 Rh7BG401200 Rh7DG438100
rosa_wichuraiana	Rw0G020660 Rw7G037320 Rw7G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	35
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	368
AluBI	AGCT	2 cut(s)	364, 464
AluI	AGCT	2 cut(s)	364, 464
Aor13HI	TCCGGA	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	397
AxyI	CCTNAGG	1 cut(s)	184
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanII	GRGCYC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	3 cut(s)	281, 285, 382
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmcAI	AGTACT	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	350
Bse21I	CCTNAGG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	77, 273
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	136, 436
Bst6I	CTCTTC	2 cut(s)	66, 387
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	191, 249
BstDEI	CTNAG	2 cut(s)	184, 441
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	77, 273
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 244, 437, 461
BstV1I	GCAGC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	77, 273
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	191, 249
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	116, 222
CviJI	RGCY	6 cut(s)	189, 303, 364, 440, 455, 464
CviKI_1	RGCY	6 cut(s)	189, 303, 364, 440, 455, 464
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	184, 441
Eam1104I	CTCTTC	2 cut(s)	66, 387
EarI	CTCTTC	2 cut(s)	66, 387
Eco130I	CCWWGG	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	119, 225
FaiI	YATR	3 cut(s)	117, 149, 223
FatI	CATG	2 cut(s)	115, 221
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	2 cut(s)	64, 260
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	205
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	119, 225
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	362, 439
HpyCH4III	ACNGT	2 cut(s)	136, 436
HpyCH4V	TGCA	2 cut(s)	84, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 244, 437, 461
HpyF3I	CTNAG	2 cut(s)	184, 441
Hsp92II	CATG	2 cut(s)	119, 225
Kpn2I	TCCGGA	1 cut(s)	39
LmnI	GCTCC	4 cut(s)	42, 53, 133, 308
LpnPI	CCDG	6 cut(s)	53, 94, 223, 261, 331, 339
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	264
MboII	GAAGA	3 cut(s)	53, 252, 404
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	3 cut(s)	35, 280, 315
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	4 cut(s)	112, 367, 373, 388
MroI	TCCGGA	1 cut(s)	39
MspI	CCGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	210, 244, 437, 461
NcoI	CCATGG	1 cut(s)	221
NlaIII	CATG	2 cut(s)	119, 225
NlaIV	GGNNCC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	304
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SatI	GCNGC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	7 cut(s)	92, 123, 366, 384, 399, 450, 466
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	35, 280, 315
SsiI	CCGC	1 cut(s)	193
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	136, 436
TasI	AATT	3 cut(s)	35, 280, 315
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	35
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.