Rroxscaffold_3G00225410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004437
Physical Location & Seq
Reverse (-)
8670036 .. 8671646
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225410.1

Sequence Viewer

Length: 732 bp
ATGGCAAAAAGAGAATATTTTTGGGGCATTTACAAATTCCGGAGCATTCTTGGAGCAACTCTTCATTGTAATAGAACATCCTGCACTACCTACTTGTCTAATGGTCGTCAAGGACATAAGGTTTCTGCTCCAGCAGTAGTATCAAATATGTTTGGGCATCGTGGTTATTCGACGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAACAACAAACCATGGACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCAACCATGGACCATCTCTAATTGGGTAAGATGGATTTCGGGCTTCCTATTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGTGGGAAACTATGGATGGATGGGTGTAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAATGTAGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTAATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTGGATGCACTGAAGCAAGACCTGGGAGACTTAAAGAAACTGGTGGAGCCAGTTGTTGATAAGATAGAGAATCATGAATTTCAAGGAAACTACTCTCCAATTTCTCCAAAAGAACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.45

Weight (kDa)

8.76

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 35, 686
AcuI CTGAAG 1 cut(s) 641
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 3 cut(s) 374, 551, 692
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 1 cut(s) 497
AluI AGCT 1 cut(s) 497
Alw26I GTCTC 1 cut(s) 630
Aor13HI TCCGGA 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 204, 569
ApoI RAATTY 2 cut(s) 35, 686
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 184
BbvI GCAGC 2 cut(s) 216, 556
BccI CCATC 5 cut(s) 287, 291, 384, 388, 415
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BciT130I CCWGG 1 cut(s) 632
BciVI GTATCC 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 630
BfaI CTAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 2 cut(s) 205, 570
BlsI GCNGC 2 cut(s) 206, 571
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 1 cut(s) 632
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 166, 568, 604
BmuI ACTGGG 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 254, 558
BsaJI CCNNGG 3 cut(s) 221, 272, 631
BsaWI WCCGGW 1 cut(s) 39
Bse1I ACTGG 4 cut(s) 356, 570, 654, 659
Bse21I CCTNAGG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 39
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 3 cut(s) 221, 272, 631
BseGI GGATG 4 cut(s) 77, 395, 399, 619
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 4 cut(s) 356, 570, 654, 659
BseXI GCAGC 2 cut(s) 216, 556
BsgI GTGCAG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 630
BsmI GAATGC 1 cut(s) 45
Bsp13I TCCGGA 1 cut(s) 39
Bsp19I CCATGG 2 cut(s) 221, 272
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 39
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 1 cut(s) 657
BsrI ACTGG 4 cut(s) 356, 570, 654, 659
BssECI CCNNGG 3 cut(s) 221, 272, 631
BssT1I CCWWGG 2 cut(s) 221, 272
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 66, 420
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 191, 249
BstDEI CTNAG 2 cut(s) 184, 474
BstDSI CCRYGG 2 cut(s) 221, 272
BstF5I GGATG 4 cut(s) 77, 395, 399, 619
BstMAI GTCTC 1 cut(s) 630
BstMWI GCNNNNNNNGC 4 cut(s) 244, 470, 494, 578
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 216, 556
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 1 cut(s) 568
BtgI CCRYGG 2 cut(s) 221, 272
BtsCI GGATG 4 cut(s) 77, 395, 399, 619
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 242, 617
Cac8I GCNNGC 2 cut(s) 191, 249
CciI TCATGA 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 222, 273, 683
CviJI RGCY 7 cut(s) 189, 309, 473, 488, 497, 569, 658
CviKI_1 RGCY 7 cut(s) 189, 309, 473, 488, 497, 569, 658
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 184, 474
DraIII CACNNNGTG 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 66, 420
EarI CTCTTC 2 cut(s) 66, 420
Eco130I CCWWGG 2 cut(s) 221, 272
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 641
Eco81I CCTNAGG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 2 cut(s) 221, 272
ErhI CCWWGG 2 cut(s) 221, 272
FaeI CATG 3 cut(s) 225, 276, 686
FaiI YATR 7 cut(s) 117, 149, 223, 274, 387, 519, 684
FatI CATG 3 cut(s) 221, 272, 682
Fnu4HI GCNGC 2 cut(s) 205, 570
FokI GGATG 4 cut(s) 64, 402, 406, 626
Fsp4HI GCNGC 2 cut(s) 205, 570
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 205, 570
GsuI CTGGAG 1 cut(s) 114
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 349
Hin1II CATG 3 cut(s) 225, 276, 686
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 2 cut(s) 328, 679
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 562
Hpy188III TCNNGA 3 cut(s) 40, 575, 683
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 3 cut(s) 84, 364, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 470, 494, 578
HpyF3I CTNAG 2 cut(s) 184, 474
Hsp92II CATG 3 cut(s) 225, 276, 686
Kpn2I TCCGGA 1 cut(s) 39
LmnI GCTCC 4 cut(s) 42, 53, 133, 655
Lsp1109I GCAGC 2 cut(s) 216, 556
LweI GCATC 3 cut(s) 166, 568, 604
MaeI CTAG 1 cut(s) 264
MboII GAAGA 3 cut(s) 53, 252, 437
MluCI AATT 7 cut(s) 35, 286, 321, 534, 686, 708, 727
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 3 cut(s) 400, 406, 421
MroI TCCGGA 1 cut(s) 39
MseI TTAA 2 cut(s) 641, 730
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 4 cut(s) 244, 470, 494, 578
NcoI CCATGG 2 cut(s) 221, 272
NlaIII CATG 3 cut(s) 225, 276, 686
NlaIV GGNNCC 1 cut(s) 657
PagI TCATGA 1 cut(s) 682
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 328, 679
PkrI GCNGC 2 cut(s) 206, 571
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 1 cut(s) 276
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 2 cut(s) 641, 730
SatI GCNGC 2 cut(s) 205, 570
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 632
SetI ASST 8 cut(s) 92, 123, 417, 432, 483, 499, 612, 633
SfaNI GCATC 3 cut(s) 166, 568, 604
SinI GGWCC 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 233, 573
SmoI CTYRAG 2 cut(s) 233, 573
Sse9I AATT 7 cut(s) 35, 286, 321, 534, 686, 708, 727
SsiI CCGC 1 cut(s) 193
SspI AATATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 2 cut(s) 221, 272
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 170
TasI AATT 7 cut(s) 35, 286, 321, 534, 686, 708, 727
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 2 cut(s) 328, 679
Tru1I TTAA 2 cut(s) 641, 730
Tru9I TTAA 2 cut(s) 641, 730
TscAI CASTG 2 cut(s) 249, 624
TseI GCWGC 2 cut(s) 204, 569
TspDTI ATGAA 2 cut(s) 53, 699
TspRI CASTG 2 cut(s) 249, 624
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 35, 686
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.