Rh7BG401200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004437
Physical Location & Seq
Reverse (-)
44594519 .. 44597084
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG401200.1

Sequence Viewer

Length: 699 bp
ATGGCAAAAAGAGAGTATTTTTGGGGAATTTACAAATTCCGTAGCATTCTTGGAACAACTCTTCATCGCAATAGAGCATCCTGCACTACCTACTTGTCTAATGGTTGTCAAGGACATGAGGTTTCTGCTCCGACGGTAGTATCAAATATGTTTGGGCGTCGTGGTTATTCGGCGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAACAACAAACCATGGACAAAACTAGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCACACCATTTCTAATTGGGTAAGATGGATTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAATGTAGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTAATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAATTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTGGATGCACTAAAGCAAGACCTGGGAGACTTAAAGACACTGGTGGAGCCAGTTGTTGATAAAATAGAAAACTATGAATTTCATGGAAACTACTCTCCAGTTTCTACAAAAGAACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.19

Weight (kDa)

7.79

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AcsI RAATTY 3 cut(s) 27, 35, 653
AcyI GRCGYC 1 cut(s) 157
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 1 cut(s) 344
AgsI TTSAA 2 cut(s) 368, 518
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
Alw26I GTCTC 1 cut(s) 597
ApeKI GCWGC 2 cut(s) 204, 536
ApoI RAATTY 3 cut(s) 27, 35, 653
AsuHPI GGTGA 1 cut(s) 397
AxyI CCTNAGG 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BanII GRGCYC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 216, 523
BccI CCATC 2 cut(s) 285, 382
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 2 cut(s) 233, 264
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 2 cut(s) 205, 537
BlsI GCNGC 2 cut(s) 206, 538
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 599
BmiI GGNNCC 2 cut(s) 304, 624
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 86, 535, 571
BmuI ACTGGG 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 221, 598
Bse1I ACTGG 4 cut(s) 350, 621, 626, 674
Bse21I CCTNAGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 221, 598
BseGI GGATG 2 cut(s) 77, 586
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 4 cut(s) 350, 621, 626, 674
BseXI GCAGC 2 cut(s) 216, 523
BsgI GTGCAG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 305
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 304, 624
BsrI ACTGG 4 cut(s) 350, 621, 626, 674
BssECI CCNNGG 2 cut(s) 221, 598
BssNI GRCGYC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 2 cut(s) 136, 436
Bst6I CTCTTC 2 cut(s) 66, 387
BstACI GRCGYC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 191, 249
BstDEI CTNAG 2 cut(s) 184, 441
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 77, 586
BstMAI GTCTC 1 cut(s) 597
BstMWI GCNNNNNNNGC 4 cut(s) 244, 437, 461, 545
BstNI CCWGG 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 216, 523
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 1 cut(s) 535
BtgI CCRYGG 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 77, 586
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 242, 614
Cac8I GCNNGC 2 cut(s) 191, 249
CseI GACGC 2 cut(s) 146, 343
Csp6I GTAC 1 cut(s) 343
CviAII CATG 3 cut(s) 116, 222, 659
CviJI RGCY 7 cut(s) 189, 303, 440, 455, 464, 536, 625
CviKI_1 RGCY 7 cut(s) 189, 303, 440, 455, 464, 536, 625
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 184, 441
DraIII CACNNNGTG 1 cut(s) 577
Eam1104I CTCTTC 2 cut(s) 66, 387
EarI CTCTTC 2 cut(s) 66, 387
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 119, 225, 662
FaiI YATR 6 cut(s) 117, 149, 223, 486, 651, 660
FatI CATG 3 cut(s) 115, 221, 658
Fnu4HI GCNGC 2 cut(s) 205, 537
FokI GGATG 2 cut(s) 64, 593
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 205, 537
FspBI CTAG 2 cut(s) 233, 264
GluI GCNGC 2 cut(s) 205, 537
GsuI CTGGAG 1 cut(s) 657
HgaI GACGC 2 cut(s) 146, 343
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 3 cut(s) 119, 225, 662
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 1 cut(s) 322
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 132, 529
Hpy188III TCNNGA 1 cut(s) 542
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 2 cut(s) 136, 162
HpyAV CCTTC 2 cut(s) 362, 439
HpyCH4III ACNGT 2 cut(s) 136, 436
HpyCH4V TGCA 3 cut(s) 84, 358, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 437, 461, 545
HpyF3I CTNAG 2 cut(s) 184, 441
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 3 cut(s) 119, 225, 662
LmnI GCTCC 3 cut(s) 133, 308, 622
LpnPI CCDG 9 cut(s) 94, 261, 331, 339, 584, 602, 611, 639, 687
Lsp1109I GCAGC 2 cut(s) 216, 523
LweI GCATC 3 cut(s) 86, 535, 571
MaeI CTAG 2 cut(s) 233, 264
MboII GAAGA 3 cut(s) 53, 252, 404
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 8 cut(s) 27, 35, 280, 315, 501, 530, 653, 694
MmeI TCCRAC 2 cut(s) 155, 500
MnlI CCTC 4 cut(s) 112, 367, 373, 388
MseI TTAA 2 cut(s) 608, 697
MspR9I CCNGG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 4 cut(s) 244, 437, 461, 545
NcoI CCATGG 1 cut(s) 221
NlaIII CATG 3 cut(s) 119, 225, 662
NlaIV GGNNCC 2 cut(s) 304, 624
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 206, 538
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 2 cut(s) 304, 624
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 2 cut(s) 608, 697
SatI GCNGC 2 cut(s) 205, 537
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 92, 123, 384, 399, 450, 466, 579, 600
SfaNI GCATC 3 cut(s) 86, 535, 571
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 8 cut(s) 27, 35, 280, 315, 501, 530, 653, 694
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 233, 264
StyD4I CCNGG 1 cut(s) 597
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 136, 436
TasI AATT 8 cut(s) 27, 35, 280, 315, 501, 530, 653, 694
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 608, 697
Tru9I TTAA 2 cut(s) 608, 697
TscAI CASTG 2 cut(s) 249, 621
TseI GCWGC 2 cut(s) 204, 536
TspDTI ATGAA 3 cut(s) 53, 647, 666
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 249, 621
XapI RAATTY 3 cut(s) 27, 35, 653
XspI CTAG 2 cut(s) 233, 264
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.