Rw7G037570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004437
Physical Location & Seq
Reverse (-)
56985723 .. 56988342
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037570.1

Sequence Viewer

Length: 531 bp
ATGTATCTCTATGGGGATCTAGATACGGAATATAATGAAGGTTCTTGTGGACTTCATTTACCCAAGTTAAGTGGTTCTAGACCACGGAGTGCATTTGCAATGAAATGCACCATGGTCGTCCGTAGTCTTGGCCCTAAAAGGGATCCGTTTCGTCCCAGGGATGATGACGAAGACGTGTTAATAGCAGAAGTATTCAATTGTAATCAGATTCTATTACCTTTTTGGGTACCTCGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAATGTAGCAAAAAAGGTGTCAGCCGATGTGGCTGATAAACTTCCAACTAATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTGGATGCACTGAAGCAAGACCTGGGAGACTTAAAGAAACTGGTGGGGCCAGTTGTTGATAAGATAGAGAACTATGAATTTCAAGGAAACTACTCTCCAGTTTCTACAAAAGAACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.86

Weight (kDa)

4.94

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AclWI GGATC 3 cut(s) 24, 137, 150
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 440
AdeI CACNNNGTG 2 cut(s) 89, 409
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 3 cut(s) 196, 350, 491
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 155, 429
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 3 cut(s) 24, 137, 150
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 2 cut(s) 130, 455
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp718I GGTACC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 131, 455
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 231
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 244
BcgI CGANNNNNNTGC 4 cut(s) 97, 131, 350, 384
BciT130I CCWGG 2 cut(s) 157, 431
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 20, 78
BfuI GTATCC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 157, 431
BmeT110I CYCGRG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 131, 455
BmiI GGNNCC 3 cut(s) 144, 228, 456
BmrFI CCNGG 2 cut(s) 157, 431
BmsI GCATC 2 cut(s) 367, 403
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 357
BsaJI CCNNGG 6 cut(s) 83, 111, 155, 156, 230, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 4 cut(s) 369, 453, 458, 506
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 157, 431
BseDI CCNNGG 6 cut(s) 83, 111, 155, 156, 230, 430
BseGI GGATG 2 cut(s) 166, 418
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 4 cut(s) 369, 453, 458, 506
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 2 cut(s) 132, 457
BshNI GGYRCC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 2 cut(s) 132, 457
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 2 cut(s) 16, 142
Bsp19I CCATGG 1 cut(s) 111
BspANI GGCC 2 cut(s) 132, 457
BspLI GGNNCC 3 cut(s) 144, 228, 456
BspPI GGATC 3 cut(s) 24, 137, 150
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 4 cut(s) 369, 453, 458, 506
BssECI CCNNGG 6 cut(s) 83, 111, 155, 156, 230, 430
BssMI GATC 2 cut(s) 16, 142
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 157, 431
Bst6I CTCTTC 1 cut(s) 249
BstDSI CCRYGG 2 cut(s) 83, 111
BstF5I GGATG 2 cut(s) 166, 418
BstKTI GATC 2 cut(s) 19, 145
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 2 cut(s) 16, 142
BstMWI GCNNNNNNNGC 2 cut(s) 293, 377
BstNI CCWGG 2 cut(s) 157, 431
BstSCI CCNGG 2 cut(s) 155, 429
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 16, 142
BstYI RGATCY 2 cut(s) 16, 142
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 132, 457
BtgI CCRYGG 2 cut(s) 83, 111
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 166, 418
BtsIMutI CAGTG 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 131, 455
Csp6I GTAC 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 1 cut(s) 112
CviJI RGCY 5 cut(s) 132, 287, 296, 368, 457
CviKI_1 RGCY 5 cut(s) 132, 287, 296, 368, 457
CviQI GTAC 1 cut(s) 227
DpnI GATC 2 cut(s) 18, 144
DpnII GATC 2 cut(s) 16, 142
DraIII CACNNNGTG 2 cut(s) 89, 409
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 155, 429
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 5 cut(s) 12, 33, 113, 318, 483
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 173, 425
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 2 cut(s) 20, 78
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 132, 457
Hin1II CATG 1 cut(s) 115
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 208
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 50, 262
Hpy188I TCNGA 2 cut(s) 207, 361
Hpy188III TCNNGA 4 cut(s) 20, 78, 233, 374
Hpy8I GTNNAC 2 cut(s) 50, 262
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 92, 98, 108, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 377
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 115
KpnI GGTACC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 16, 142
LpnPI CCDG 8 cut(s) 142, 169, 350, 416, 434, 443, 471, 519
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 367, 403
MaeI CTAG 2 cut(s) 20, 78
MaeII ACGT 1 cut(s) 174
MalI GATC 2 cut(s) 18, 144
MboI GATC 2 cut(s) 16, 142
MboII GAAGA 2 cut(s) 182, 266
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 2 cut(s) 16, 142
MluCI AATT 4 cut(s) 196, 333, 485, 526
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 229, 235, 240, 250
MseI TTAA 4 cut(s) 68, 179, 440, 529
MspR9I CCNGG 2 cut(s) 157, 431
MunI CAATTG 1 cut(s) 196
MvaI CCWGG 2 cut(s) 157, 431
MwoI GCNNNNNNNGC 2 cut(s) 293, 377
NcoI CCATGG 1 cut(s) 111
NdeII GATC 2 cut(s) 16, 142
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 144, 228, 456
PasI CCCWGGG 1 cut(s) 156
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 155, 429
PspGI CCWGG 2 cut(s) 155, 429
PspN4I GGNNCC 3 cut(s) 144, 228, 456
PspPI GGNCC 2 cut(s) 131, 455
PsuI RGATCY 2 cut(s) 16, 142
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 4 cut(s) 68, 179, 440, 529
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 16, 142
Sau96I GGNCC 2 cut(s) 131, 455
ScrFI CCNGG 2 cut(s) 157, 431
SetI ASST 9 cut(s) 43, 177, 220, 232, 246, 261, 282, 411, 432
SfaNI GCATC 2 cut(s) 367, 403
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 4 cut(s) 196, 333, 485, 526
SspMI CTAG 2 cut(s) 20, 78
StyD4I CCNGG 2 cut(s) 155, 429
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 177
TasI AATT 4 cut(s) 196, 333, 485, 526
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 4 cut(s) 68, 179, 440, 529
Tru9I TTAA 4 cut(s) 68, 179, 440, 529
TscAI CASTG 1 cut(s) 423
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 44, 51, 116, 498
TspGWI ACGGA 4 cut(s) 41, 100, 110, 135
TspRI CASTG 1 cut(s) 423
XapI RAATTY 1 cut(s) 485
XbaI TCTAGA 2 cut(s) 19, 77
XspI CTAG 2 cut(s) 20, 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.