Rorug07G0273600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004437
Physical Location & Seq
Reverse (-)
25987496 .. 25987813
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0273600.1

Sequence Viewer

Length: 318 bp
ATGATCCAGGCCAGGATGGAGCACACCTCCAAACAAAAGGAAAGTTTTGGCATAACTAGCATGAACAATCAGGAAGGAGGTGAAGCGCTGATTTCAACAAATGAAAGGTTGCGGTGGAGGAGACAACCGTCACCGAATATCCAGGAAGATGATTTGGTTGACCTTGTTGAAGACACCAAGGCCTTGATAACACAACTGTCTACTATGGAGAGGAGCCGTTGTGTAGTTTCTATAGTGGGAATGGGAGGTTTGGGCAAAGACCACTCCAGCAAAAAAATTGTACAATCACCCTCAGCTTGGGAACCTATTTCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

6.1

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AciI CCGC 1 cut(s) 112
AfaI GTAC 1 cut(s) 282
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 3 cut(s) 96, 170, 312
AjnI CCWGG 3 cut(s) 6, 11, 141
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 115
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 2 cut(s) 9, 180
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 92, 123, 279
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 3 cut(s) 8, 13, 143
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 8, 13, 143
BmiI GGNNCC 2 cut(s) 215, 303
BmrFI CCNGG 3 cut(s) 8, 13, 143
BoxI GACNNNNGTC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseBI CCWGG 3 cut(s) 8, 13, 143
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 133, 226
BshFI GGCC 2 cut(s) 11, 182
BsiHKAI GWGCWC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 2 cut(s) 11, 182
Bsp1286I GDGCHC 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 11, 182
BspCNI CTCAG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 215, 303
BsrGI TGTACA 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 8, 13, 143
Bst4CI ACNGT 2 cut(s) 129, 198
BstAUI TGTACA 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 3 cut(s) 8, 13, 143
BstPAI GACNNNNGTC 1 cut(s) 127
BstSCI CCNGG 3 cut(s) 6, 11, 141
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 2 cut(s) 11, 182
BtsCI GGATG 1 cut(s) 21
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 11, 182, 216, 296
CviKI_1 RGCY 4 cut(s) 11, 182, 216, 296
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 292
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 6, 11, 141
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 53, 62, 206, 233
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 200
FokI GGATG 1 cut(s) 28
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 2 cut(s) 11, 182
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HphI GGTGA 3 cut(s) 92, 123, 279
Hpy166II GTNNAC 2 cut(s) 160, 201
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 2 cut(s) 160, 201
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 129, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 292
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 19, 213
LpnPI CCDG 6 cut(s) 20, 25, 56, 128, 155, 280
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 129
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 158, 182
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 276, 312
MnlI CCTC 6 cut(s) 37, 71, 111, 204, 239, 301
MspR9I CCNGG 3 cut(s) 8, 13, 143
MvaI CCWGG 3 cut(s) 8, 13, 143
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 215, 303
NmuCI GTSAC 1 cut(s) 129
PceI AGGCCT 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 141
PshAI GACNNNNGTC 1 cut(s) 127
Psp6I CCWGG 3 cut(s) 6, 11, 141
PspGI CCWGG 3 cut(s) 6, 11, 141
PspN4I GGNNCC 2 cut(s) 215, 303
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 3 cut(s) 8, 13, 143
SduI GDGCHC 1 cut(s) 24
SetI ASST 7 cut(s) 29, 82, 110, 165, 250, 298, 307
SfcI CTRYAG 1 cut(s) 231
Sse9I AATT 2 cut(s) 276, 312
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 57
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 6, 11, 141
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 129, 198
TasI AATT 2 cut(s) 276, 312
TatI WGTACW 1 cut(s) 280
TseFI GTSAC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 77, 117
XmiI GTMKAC 1 cut(s) 200
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.