Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004437

Physical Location & Seq

Genomic Coordinates Forward (+)

9810765 .. 9812297

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAATATGCCTAAGAAAGATTTGTGGGGTACTTTCAGATTGAGAAGCTTTCTTCAACTACTCTCTGGCAATCGATCTAGCTCTACAAATGCATCGCAGGGACAGTTCCCAGCTATGGGAGTATCTAAGGTTGCCCATGGCTATTCGATACCGCAAAGTCTTCGACTTTTCAGCACCAACAGCAGACCATGTACAAAACTTGATACCAAAGTGTTAAATGGTGGAGAGGACAAGGTTCAACAATCACACCAAGCTACTTCCACTAGACTCAATTTCGGCCACTGGTTAAAATGGATGTTGGGATCCATATTATCACTAATGCTGCCTTTTTGGGCTCAGAATTGGGGAAAACTGAAGAGGATTGAAGGAAAGGCAGAAATTGTAATGGAAGAGATTGAGGATGTGGCAGAGGTAGTAGAAAAAGTGGCAAATGTGGCTGAGAAGGTGTCGGCGGACGTCGCAGATGAGCTCCCTGATAATAGCAAACTAAAGGAAACAGTTTTGCTTGTAGAACGGGCATCAAAAGTGGCTGCTCAAGATGCTCAACTAACACAAGATTTAATTCACAAGGTGGAAACCCTGAAGCAAGACCTGGGAGACTTGGAGACGCTAGCGGAGCCCGTTCTTGAGAAGATTGCGAAGCGAGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.17

Weight (kDa)

7.82

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14095 AT2G14095
fragaria_vesca	FvH4_2g13500
malus_domestica	MD05G1054900.v1.1
prunus_persica	Prupe.8G066300_v2.0.a1
pyrus_communis	pycom05g04540
rosa_chinensis	RchiOBHm_Chr7g0236611
rosa_laevigata	RLG00000000991 RLG00000001072 RLG00000001109 RLG00000001121 RLG00000001933 RLG00000030013
rosa_multiflora	Rmu_sc0002536.1_g000011 Rmu_sc0008183.1_g000027
rosa_roxburghii	Rroxscaffold_3G00225030 Rroxscaffold_3G00225410
rosa_rugosa	Rorug01G0145400.1 Rorug07G0273600 Rorug07G0273700 Rorug07G0293900 Rorug07G0295100 Rorug07G0297900
rosa_samantha	Rh1BG129000 Rh7AG434500 Rh7AG449300 Rh7AG452300 Rh7BG401200 Rh7DG438100
rosa_wichuraiana	Rw0G020660 Rw7G037320 Rw7G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
AciI	CCGC	3 cut(s)	152, 452, 614
AclWI	GGATC	2 cut(s)	297, 310
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	374, 602
AcyI	GRCGYC	1 cut(s)	456
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	2 cut(s)	31, 193
AfiI	CCNNNNNNNGG	2 cut(s)	115, 116
AgsI	TTSAA	3 cut(s)	56, 239, 365
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	5 cut(s)	48, 81, 113, 254, 469
AluI	AGCT	5 cut(s)	48, 81, 113, 254, 469
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	591, 599
AlwI	GGATC	2 cut(s)	297, 310
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	322, 530
AsuNHI	GCTAGC	1 cut(s)	610
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	3 cut(s)	337, 471, 621
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	309, 517
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	2 cut(s)	591, 599
BfaI	CTAG	3 cut(s)	78, 264, 611
BisI	GCNGC	2 cut(s)	323, 531
BlsI	GCNGC	2 cut(s)	324, 532
Bme1390I	CCNGG	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	304, 618
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	101, 527, 529
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	519, 647
Bsa29I	ATCGAT	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	136, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 116
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	593
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	136, 592
BseGI	GGATG	2 cut(s)	300, 406
BseLI	CCNNNNNNNGG	2 cut(s)	115, 116
BseMII	CTCAG	2 cut(s)	350, 429
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	309, 517
BseYI	CCCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	115, 116
BsmAI	GTCTC	2 cut(s)	591, 599
BsmBI	CGTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	337, 471, 621
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	74, 302
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	3 cut(s)	152, 452, 614
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	349, 430
BspDI	ATCGAT	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	304, 618
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	297, 310
BsrGI	TGTACA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	136, 592
BssMI	GATC	2 cut(s)	74, 302
BssNI	GRCGYC	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	105, 499
Bst6I	CTCTTC	2 cut(s)	350, 384
BstACI	GRCGYC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	4 cut(s)	12, 126, 336, 438
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	300, 406
BstKTI	GATC	2 cut(s)	77, 305
BstMAI	GTCTC	2 cut(s)	591, 599
BstMBI	GATC	2 cut(s)	74, 302
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 434, 458, 539, 616
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	309, 517
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	300, 406
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	73
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	30, 192
CviAII	CATG	2 cut(s)	137, 189
CviQI	GTAC	2 cut(s)	30, 192
DdeI	CTNAG	4 cut(s)	12, 126, 336, 438
DpnI	GATC	2 cut(s)	76, 304
DpnII	GATC	2 cut(s)	74, 302
DraIII	CACNNNGTG	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	350, 384
EarI	CTCTTC	2 cut(s)	350, 384
EciI	GGCGGA	1 cut(s)	467
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	3 cut(s)	337, 471, 621
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	374, 602
EcoICRI	GAGCTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	94
EcoT38I	GRGCYC	3 cut(s)	337, 471, 621
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	2 cut(s)	140, 192
FaiI	YATR	6 cut(s)	8, 116, 138, 190, 308, 652
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	136, 188
Fnu4HI	GCNGC	2 cut(s)	323, 531
FokI	GGATG	2 cut(s)	307, 413
FriOI	GRGCYC	3 cut(s)	337, 471, 621
Fsp4HI	GCNGC	2 cut(s)	323, 531
FspBI	CTAG	3 cut(s)	78, 264, 611
GluI	GCNGC	2 cut(s)	323, 531
GsaI	CCCAGC	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	279
HgaI	GACGC	1 cut(s)	616
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	140, 192
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	38, 339
Hpy188III	TCNNGA	2 cut(s)	536, 626
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	359, 436
HpyCH4III	ACNGT	2 cut(s)	105, 499
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 434, 458, 539, 616
HpyF3I	CTNAG	4 cut(s)	12, 126, 336, 438
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	140, 192
Kzo9I	GATC	2 cut(s)	74, 302
LmnI	GCTCC	2 cut(s)	474, 616
LpnPI	CCDG	8 cut(s)	51, 83, 123, 268, 486, 578, 593, 605
Lsp1109I	GCAGC	2 cut(s)	309, 517
LweI	GCATC	3 cut(s)	101, 527, 529
MaeI	CTAG	3 cut(s)	78, 264, 611
MaeII	ACGT	1 cut(s)	456
MalI	GATC	2 cut(s)	76, 304
MboI	GATC	2 cut(s)	74, 302
MboII	GAAGA	5 cut(s)	44, 152, 367, 401, 643
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	3 cut(s)	337, 471, 621
MluCI	AATT	4 cut(s)	271, 340, 378, 561
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	220, 351, 391, 403
Mph1103I	ATGCAT	1 cut(s)	94
MseI	TTAA	3 cut(s)	215, 287, 560
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	5 cut(s)	180, 434, 458, 539, 616
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	74, 302
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	140, 192
NlaIV	GGNNCC	2 cut(s)	304, 618
NsiI	ATGCAT	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	324, 532
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	304, 618
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	2 cut(s)	31, 193
RsaNI	GTAC	2 cut(s)	30, 192
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	215, 287, 560
SatI	GCNGC	2 cut(s)	323, 531
Sau3AI	GATC	2 cut(s)	74, 302
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	3 cut(s)	337, 471, 621
SfaNI	GCATC	3 cut(s)	101, 527, 529
SmlI	CTYRAG	2 cut(s)	534, 626
SmoI	CTYRAG	2 cut(s)	534, 626
Sse9I	AATT	4 cut(s)	271, 340, 378, 561
SsiI	CCGC	3 cut(s)	152, 452, 614
SspMI	CTAG	3 cut(s)	78, 264, 611
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	105, 499
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	3 cut(s)	73, 146, 163
TasI	AATT	4 cut(s)	271, 340, 378, 561
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	215, 287, 560
Tru9I	TTAA	3 cut(s)	215, 287, 560
TscAI	CASTG	1 cut(s)	287
TseI	GCWGC	2 cut(s)	322, 530
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	287
XspI	CTAG	3 cut(s)	78, 264, 611
ZraI	GACGTC	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.