Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004437

Physical Location & Seq

Genomic Coordinates Reverse (-)

58478263 .. 58480304

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG434500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAAAAGGAGAATATTTTTGGGGCATTTACAAATTCCGGAGCATTCTTGGAGCAACTCTTCATCGCAATAGAACATCCTGCACTCCCTACTTGTCTAATGGTCGTCAAGGACATGAGGTTTCTGCTCCGACAGTAGTATCAAATATGTTTTGGCATCGTGGTTATTCGAAGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAGCAAGAAACCATGGACAAAACTTGAGCAACCACTGCCTGCTGCAACTTCTTCTAGGCACACCATCCCTAATTGGGTAAGATGGGTTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGCTTGAAGTGGGAAACTATGGATGGATGGGTGTAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAACGTCGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTAATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTCTTAATTTTTCTTAGTCATATATATGCAGATATCTATAATTCTATATACACTCTTGTTTATTTTAACTCGTCTCTCTGGCTAGCTAGTGAATTTCATCTTGTCCTTTTTATTAATTATATAGGTGGATGCACTGAAGCAAGACCTGGGAGACTTAAAGAAACTGGTGGAGCCAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

29.44

Weight (kDa)

9.03

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14095 AT2G14095
fragaria_vesca	FvH4_2g13500
malus_domestica	MD05G1054900.v1.1
prunus_persica	Prupe.8G066300_v2.0.a1
pyrus_communis	pycom05g04540
rosa_chinensis	RchiOBHm_Chr7g0236611
rosa_laevigata	RLG00000000991 RLG00000001072 RLG00000001109 RLG00000001121 RLG00000001933 RLG00000030013
rosa_multiflora	Rmu_sc0002536.1_g000011 Rmu_sc0008183.1_g000027
rosa_roxburghii	Rroxscaffold_3G00225030 Rroxscaffold_3G00225410
rosa_rugosa	Rorug01G0145400.1 Rorug07G0273600 Rorug07G0273700 Rorug07G0293900 Rorug07G0295100 Rorug07G0297900
rosa_samantha	Rh1BG129000 Rh7AG434500 Rh7AG449300 Rh7AG452300 Rh7BG401200 Rh7DG438100
rosa_wichuraiana	Rw0G020660 Rw7G037320 Rw7G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	35, 695
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	368, 545
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	3 cut(s)	364, 491, 689
AluI	AGCT	3 cut(s)	364, 491, 689
Alw26I	GTCTC	2 cut(s)	681, 748
Aor13HI	TCCGGA	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	204, 251, 563
ApoI	RAATTY	2 cut(s)	35, 695
AseI	ATTAAT	1 cut(s)	717
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	170
AsuNHI	GCTAGC	1 cut(s)	685
AxyI	CCTNAGG	1 cut(s)	184
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanII	GRGCYC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	216, 238, 550
BccI	CCATC	5 cut(s)	281, 285, 378, 382, 409
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	750
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	681, 748
BfaI	CTAG	3 cut(s)	264, 686, 690
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	3 cut(s)	205, 252, 564
BlsI	GCNGC	3 cut(s)	206, 253, 565
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	304, 775
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	166, 562, 722
BmtI	GCTAGC	1 cut(s)	689
BmuI	ACTGGG	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	254, 552
BsaJI	CCNNGG	2 cut(s)	221, 749
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	4 cut(s)	350, 564, 772, 777
Bse21I	CCTNAGG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	2 cut(s)	221, 749
BseGI	GGATG	5 cut(s)	77, 273, 389, 393, 737
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	4 cut(s)	350, 564, 772, 777
BseXI	GCAGC	3 cut(s)	216, 238, 550
BsgI	GTGCAG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	681, 748
BsmBI	CGTCTC	1 cut(s)	681
BsmI	GAATGC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	304, 775
BspOI	GCTAGC	1 cut(s)	689
BspT104I	TTCGAA	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	350, 564, 772, 777
BssECI	CCNNGG	2 cut(s)	221, 749
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	136, 463
Bst6I	CTCTTC	2 cut(s)	66, 414
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	191, 249, 687
BstDEI	CTNAG	3 cut(s)	184, 468, 617
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	5 cut(s)	77, 273, 389, 393, 737
BstMAI	GTCTC	2 cut(s)	681, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 244, 464, 488, 572
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	216, 238, 550
Bsu36I	CCTNAGG	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	562
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	5 cut(s)	77, 273, 389, 393, 737
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 735
Cac8I	GCNNGC	3 cut(s)	191, 249, 687
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	116, 222
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	184, 468, 617
Eam1104I	CTCTTC	2 cut(s)	66, 414
EarI	CTCTTC	2 cut(s)	66, 414
Eco130I	CCWWGG	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	759
Eco81I	CCTNAGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	2 cut(s)	119, 225
FatI	CATG	2 cut(s)	115, 221
Fnu4HI	GCNGC	3 cut(s)	205, 252, 564
FokI	GGATG	5 cut(s)	64, 260, 396, 400, 744
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	205, 252, 564
FspBI	CTAG	3 cut(s)	264, 686, 690
GluI	GCNGC	3 cut(s)	205, 252, 564
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	119, 225
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	132, 556
Hpy188III	TCNNGA	2 cut(s)	40, 569
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	2 cut(s)	136, 463
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	84, 254, 358, 632, 735
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 244, 464, 488, 572
HpyF3I	CTNAG	3 cut(s)	184, 468, 617
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	119, 225
Kpn2I	TCCGGA	1 cut(s)	39
LmnI	GCTCC	5 cut(s)	42, 53, 133, 308, 773
Lsp1109I	GCAGC	3 cut(s)	216, 238, 550
LweI	GCATC	3 cut(s)	166, 562, 722
MaeI	CTAG	3 cut(s)	264, 686, 690
MaeII	ACGT	1 cut(s)	432
MboII	GAAGA	4 cut(s)	53, 184, 252, 431
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	8 cut(s)	35, 280, 315, 528, 609, 643, 695, 718
MmeI	TCCRAC	2 cut(s)	155, 527
MnlI	CCTC	4 cut(s)	112, 394, 400, 415
MroI	TCCGGA	1 cut(s)	39
MseI	TTAA	4 cut(s)	608, 669, 717, 759
MslI	CAYNNNNRTG	1 cut(s)	627
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	5 cut(s)	210, 244, 464, 488, 572
NcoI	CCATGG	1 cut(s)	221
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	2 cut(s)	119, 225
NlaIV	GGNNCC	2 cut(s)	304, 775
NspV	TTCGAA	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	322
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	206, 253, 565
PshBI	ATTAAT	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	304, 775
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	608, 669, 717, 759
SatI	GCNGC	3 cut(s)	205, 252, 564
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	3 cut(s)	166, 562, 722
SfuI	TTCGAA	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	233, 567
SmoI	CTYRAG	2 cut(s)	233, 567
Sse9I	AATT	8 cut(s)	35, 280, 315, 528, 609, 643, 695, 718
SsiI	CCGC	1 cut(s)	193
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	3 cut(s)	264, 686, 690
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	136, 463
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	170
TasI	AATT	8 cut(s)	35, 280, 315, 528, 609, 643, 695, 718
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	4 cut(s)	608, 669, 717, 759
Tru9I	TTAA	4 cut(s)	608, 669, 717, 759
TscAI	CASTG	2 cut(s)	249, 742
TseI	GCWGC	3 cut(s)	204, 251, 563
TspDTI	ATGAA	2 cut(s)	53, 689
TspRI	CASTG	2 cut(s)	249, 742
Tth111I	GACNNNGTC	1 cut(s)	431
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	2 cut(s)	35, 695
XspI	CTAG	3 cut(s)	264, 686, 690
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.