Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004437

Physical Location & Seq

Genomic Coordinates Reverse (-)

8919486 .. 8920379

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTTGGGCATCGTGGTTATTCGGCGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAACAAGAAACCATGGACAAAACTTGAGCAACCATTGCCTGCTACAACTTCTTCTAGGCGCACCTTCTCTACTTGGGTAAGATGGATTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGATGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAACGTAGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGTTGATAAACTTCCAACTGATCATACAAGACTAAAAGAAATTGCTTTACTGATTGAACGAGTATCCGAACTGGCTGCTCAGGATGCTCAACTAACACAAGATTTTATTCACAAGGTTGATGCACTGAAGCAAGACCTGGGAGACTTAAAGAAACTGGTGGAGCCAGTTGTTGATAAGATAGAGAACTATGAATTTCAAGGAAACTACTCTCCAGTTTCTACAAAAGAACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.77

Weight (kDa)

6.11

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14095 AT2G14095
fragaria_vesca	FvH4_2g13500
malus_domestica	MD05G1054900.v1.1
prunus_persica	Prupe.8G066300_v2.0.a1
pyrus_communis	pycom05g04540
rosa_chinensis	RchiOBHm_Chr7g0236611
rosa_laevigata	RLG00000000991 RLG00000001072 RLG00000001109 RLG00000001121 RLG00000001933 RLG00000030013
rosa_multiflora	Rmu_sc0002536.1_g000011 Rmu_sc0008183.1_g000027
rosa_roxburghii	Rroxscaffold_3G00225030 Rroxscaffold_3G00225410
rosa_rugosa	Rorug01G0145400.1 Rorug07G0273600 Rorug07G0273700 Rorug07G0293900 Rorug07G0295100 Rorug07G0297900
rosa_samantha	Rh1BG129000 Rh7AG434500 Rh7AG449300 Rh7AG452300 Rh7BG401200 Rh7DG438100
rosa_wichuraiana	Rw0G020660 Rw7G037320 Rw7G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	221, 371, 512
AjnI	CCWGG	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	57, 389
ApoI	RAATTY	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	69, 376
BccI	CCATC	2 cut(s)	138, 235
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	1 cut(s)	452
BciVI	GTATCC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	58, 390
BlsI	GCNGC	2 cut(s)	59, 391
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	157, 477
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	4 cut(s)	19, 177, 388, 424
BmuI	ACTGGG	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	74, 451
Bse1I	ACTGG	5 cut(s)	203, 390, 474, 479, 527
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	74, 451
BseGI	GGATG	2 cut(s)	192, 403
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	285, 407
BseNI	ACTGG	5 cut(s)	203, 390, 474, 479, 527
BseXI	GCAGC	2 cut(s)	69, 376
BsmAI	GTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	334
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	286, 406
BspLI	GGNNCC	2 cut(s)	157, 477
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	5 cut(s)	203, 390, 474, 479, 527
BssECI	CCNNGG	2 cut(s)	74, 451
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	44, 102
BstDEI	CTNAG	3 cut(s)	37, 294, 393
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	192, 403
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 290, 398
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	69, 376
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	192, 403
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	44, 102
CfoI	GCGC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	6 cut(s)	42, 156, 293, 308, 389, 478
CviKI_1	RGCY	6 cut(s)	42, 156, 293, 308, 389, 478
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	37, 294, 393
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	461
Eco81I	CCTNAGG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	78
FaiI	YATR	3 cut(s)	76, 339, 504
FatI	CATG	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	58, 390
FokI	GGATG	2 cut(s)	199, 410
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	2 cut(s)	58, 390
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	58, 390
GsuI	CTGGAG	1 cut(s)	510
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	136, 215, 292
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	190, 211, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 290, 398
HpyF3I	CTNAG	3 cut(s)	37, 294, 393
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	78
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	161, 475
Lsp1109I	GCAGC	2 cut(s)	69, 376
LweI	GCATC	4 cut(s)	19, 177, 388, 424
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	258
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	2 cut(s)	105, 257
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	4 cut(s)	168, 354, 506, 547
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	3 cut(s)	220, 226, 241
MseI	TTAA	2 cut(s)	461, 550
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	97, 290, 398
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	157, 477
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	59, 391
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	157, 477
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	461, 550
SatI	GCNGC	2 cut(s)	58, 390
Sau3AI	GATC	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	7 cut(s)	128, 237, 252, 261, 303, 432, 453
SfaNI	GCATC	4 cut(s)	19, 177, 388, 424
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	168, 354, 506, 547
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	261
TasI	AATT	4 cut(s)	168, 354, 506, 547
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	2 cut(s)	461, 550
Tru9I	TTAA	2 cut(s)	461, 550
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	2 cut(s)	57, 389
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	506
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.