Rw7G037320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004437
Physical Location & Seq
Forward (+)
56683172 .. 56684775
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037320.1

Sequence Viewer

Length: 726 bp
ATGGCAAAAAGAGAATATTTTTGGGGCATTTACAAATTCCGGAGCATTCTTGGAGCAACTCTTCATCGCAATAGAACATCCTGCACTACCTACTTGTCTAATGGTCGTCAAGGACATGAGGTTTCTGCTCCGACAGTAGTATCAAATATGTTTGGGCATCGTGGTTATTCGGCGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAGCAAGAAACCATGGACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCACACCATCCCTAATTGGGTAAGATGGATTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGCTTGAAGTGGGAAACTATGGATGGATGGGTGTAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAACGTAGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTAATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTGGATGCACTGAAGCAAGACCTGGGAGACTTAAAGAAACTGGTGGAGCCAGTTGTTGATAAGATAGAGAACTATGAATTTCAAGGAAACTACTCTCCAGTTTCTACAAAAGAACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.21

Weight (kDa)

8.84

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 35, 680
AcuI CTGAAG 1 cut(s) 635
AdeI CACNNNGTG 1 cut(s) 604
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 3 cut(s) 368, 545, 686
AjnI CCWGG 1 cut(s) 624
AluBI AGCT 2 cut(s) 364, 491
AluI AGCT 2 cut(s) 364, 491
Alw26I GTCTC 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 204, 563
ApoI RAATTY 2 cut(s) 35, 680
AsuHPI GGTGA 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BanII GRGCYC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 216, 550
BccI CCATC 5 cut(s) 281, 285, 378, 382, 409
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 1 cut(s) 626
BciVI GTATCC 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 2 cut(s) 205, 564
BlsI GCNGC 2 cut(s) 206, 565
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 626
BmiI GGNNCC 2 cut(s) 304, 651
BmrFI CCNGG 1 cut(s) 626
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 166, 562, 598
BmuI ACTGGG 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 254, 552
BsaJI CCNNGG 2 cut(s) 221, 625
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 5 cut(s) 350, 564, 648, 653, 701
Bse21I CCTNAGG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 39
BseBI CCWGG 1 cut(s) 626
BseDI CCNNGG 2 cut(s) 221, 625
BseGI GGATG 5 cut(s) 77, 273, 389, 393, 613
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 5 cut(s) 350, 564, 648, 653, 701
BseXI GCAGC 2 cut(s) 216, 550
BsgI GTGCAG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 304, 651
BsrI ACTGG 5 cut(s) 350, 564, 648, 653, 701
BssECI CCNNGG 2 cut(s) 221, 625
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 626
Bst4CI ACNGT 2 cut(s) 136, 463
Bst6I CTCTTC 2 cut(s) 66, 414
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 191, 249
BstDEI CTNAG 2 cut(s) 184, 468
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 5 cut(s) 77, 273, 389, 393, 613
BstMAI GTCTC 1 cut(s) 624
BstMWI GCNNNNNNNGC 5 cut(s) 210, 244, 464, 488, 572
BstNI CCWGG 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 624
BstV1I GCAGC 2 cut(s) 216, 550
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 1 cut(s) 562
BtgI CCRYGG 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 5 cut(s) 77, 273, 389, 393, 613
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 242, 611
Cac8I GCNNGC 2 cut(s) 191, 249
CseI GACGC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 343
CviAII CATG 2 cut(s) 116, 222
CviJI RGCY 8 cut(s) 189, 303, 364, 467, 482, 491, 563, 652
CviKI_1 RGCY 8 cut(s) 189, 303, 364, 467, 482, 491, 563, 652
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 184, 468
DraIII CACNNNGTG 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 66, 414
EarI CTCTTC 2 cut(s) 66, 414
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 635
Eco81I CCTNAGG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 624
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 119, 225
FaiI YATR 6 cut(s) 117, 149, 223, 381, 513, 678
FatI CATG 2 cut(s) 115, 221
Fnu4HI GCNGC 2 cut(s) 205, 564
FokI GGATG 5 cut(s) 64, 260, 396, 400, 620
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 205, 564
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 205, 564
GsuI CTGGAG 1 cut(s) 684
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 343
Hin1II CATG 2 cut(s) 119, 225
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 2 cut(s) 132, 556
Hpy188III TCNNGA 2 cut(s) 40, 569
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 2 cut(s) 136, 463
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 3 cut(s) 84, 358, 611
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 244, 464, 488, 572
HpyF3I CTNAG 2 cut(s) 184, 468
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 2 cut(s) 119, 225
Kpn2I TCCGGA 1 cut(s) 39
LmnI GCTCC 5 cut(s) 42, 53, 133, 308, 649
Lsp1109I GCAGC 2 cut(s) 216, 550
LweI GCATC 3 cut(s) 166, 562, 598
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 432
MboII GAAGA 3 cut(s) 53, 252, 431
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 6 cut(s) 35, 280, 315, 528, 680, 721
MmeI TCCRAC 2 cut(s) 155, 527
MnlI CCTC 4 cut(s) 112, 394, 400, 415
MroI TCCGGA 1 cut(s) 39
MseI TTAA 2 cut(s) 635, 724
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 626
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 626
MwoI GCNNNNNNNGC 5 cut(s) 210, 244, 464, 488, 572
NcoI CCATGG 1 cut(s) 221
NlaIII CATG 2 cut(s) 119, 225
NlaIV GGNNCC 2 cut(s) 304, 651
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 206, 565
Psp6I CCWGG 1 cut(s) 624
PspGI CCWGG 1 cut(s) 624
PspN4I GGNNCC 2 cut(s) 304, 651
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 2 cut(s) 635, 724
SatI GCNGC 2 cut(s) 205, 564
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 626
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 3 cut(s) 166, 562, 598
SmlI CTYRAG 2 cut(s) 233, 567
SmoI CTYRAG 2 cut(s) 233, 567
Sse9I AATT 6 cut(s) 35, 280, 315, 528, 680, 721
SsiI CCGC 1 cut(s) 193
SspI AATATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 624
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 136, 463
TaiI ACGT 1 cut(s) 435
TasI AATT 6 cut(s) 35, 280, 315, 528, 680, 721
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 635, 724
Tru9I TTAA 2 cut(s) 635, 724
TscAI CASTG 2 cut(s) 249, 618
TseI GCWGC 2 cut(s) 204, 563
TspDTI ATGAA 2 cut(s) 53, 693
TspRI CASTG 2 cut(s) 249, 618
XapI RAATTY 2 cut(s) 35, 680
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.