RLG00000030013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004437
Physical Location & Seq
Forward (+)
53329816 .. 53330510
695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030013

Sequence Viewer

Length: 426 bp
ATGGCAAAAAGAGAGTATTTTTGGGGCATTTACAAATTCCGGAGCATTCTTGGAACAACTGTTCATCGCAATAGAGCATCCTGCGCTATCCACTTGTCTAATGGTCATCAAGGACATGAGGTTTCTGCTCCGACAGTAGTATCAAATATGTTTGGGCATCGTGGTTATTCGGCGAATATTCCCTTAGGCTTGCGGTTTTTTAGCAGCACCAACAAGAAACCATGGACAAAACTTGGGCAACCACTGCCTGCTACAACTTCTTCTAGGCAACCATGGACCATCTCTAATTGGGTAAGATGGATTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGATGCACAAGTACTGGGGAAATCTGCAAAAGATTGATGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAATGTAGCAAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.02

Weight (kDa)

10.0

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 350
AloI GAACNNNNNNTCC 2 cut(s) 45, 77
Aor13HI TCCGGA 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 216
BccI CCATC 4 cut(s) 287, 291, 368, 388
BfaI CTAG 1 cut(s) 264
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 310
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 86, 166, 330
BmuI ACTGGG 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 221, 272
BsaWI WCCGGW 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 356
Bse21I CCTNAGG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 221, 272
BseGI GGATG 2 cut(s) 77, 345
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 40
BsmI GAATGC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 311
Bsp13I TCCGGA 1 cut(s) 39
Bsp19I CCATGG 2 cut(s) 221, 272
BspACI CCGC 1 cut(s) 193
BspEI TCCGGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 221, 272
BssT1I CCWWGG 2 cut(s) 221, 272
Bst4CI ACNGT 2 cut(s) 61, 136
Bst6I CTCTTC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 191, 249
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 2 cut(s) 221, 272
BstF5I GGATG 2 cut(s) 77, 345
BstHHI GCGC 1 cut(s) 86
BstMWI GCNNNNNNNGC 2 cut(s) 83, 244
BstV1I GCAGC 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 184
BtgI CCRYGG 2 cut(s) 221, 272
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 77, 345
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 191, 249
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 116, 222, 273
CviJI RGCY 2 cut(s) 189, 309
CviKI_1 RGCY 2 cut(s) 189, 309
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 221, 272
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 221, 272
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 2 cut(s) 221, 272
FaeI CATG 3 cut(s) 119, 225, 276
FaiI YATR 4 cut(s) 117, 149, 223, 274
FatI CATG 3 cut(s) 115, 221, 272
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 2 cut(s) 64, 352
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 205
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 86
Hin1II CATG 3 cut(s) 119, 225, 276
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 406
HpyCH4III ACNGT 2 cut(s) 61, 136
HpyCH4V TGCA 2 cut(s) 343, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 244
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 3 cut(s) 119, 225, 276
HspAI GCGC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 39
LmnI GCTCC 3 cut(s) 42, 133, 314
LpnPI CCDG 5 cut(s) 53, 94, 261, 337, 345
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 3 cut(s) 86, 166, 330
MaeI CTAG 1 cut(s) 264
MboII GAAGA 2 cut(s) 252, 410
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 3 cut(s) 35, 286, 321
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 4 cut(s) 112, 373, 379, 394
MroI TCCGGA 1 cut(s) 39
MspI CCGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 83, 244
NcoI CCATGG 2 cut(s) 221, 272
NlaIII CATG 3 cut(s) 119, 225, 276
NlaIV GGNNCC 1 cut(s) 310
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 276
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 1 cut(s) 350
SduI GDGCHC 1 cut(s) 311
SetI ASST 3 cut(s) 123, 390, 405
SfaNI GCATC 3 cut(s) 86, 166, 330
SinI GGWCC 1 cut(s) 276
Sse9I AATT 3 cut(s) 35, 286, 321
SsiI CCGC 1 cut(s) 193
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 2 cut(s) 221, 272
TaaI ACNGT 2 cut(s) 61, 136
TasI AATT 3 cut(s) 35, 286, 321
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 328
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.