RLG00000001933

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004437
Physical Location & Seq
Forward (+)
23195535 .. 23196225
691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001933

Sequence Viewer

Length: 471 bp
ATGGCAAAAAGAGAGTATTTTTGGGGCATTTACAAATTCCGGAGCATTCTTGGAGCAACTCTTCATCGCAATAGAACATCCTGCACTACCTACTTGTCTAATGGTCGTCAAGGACATGAGGTTTCTGCTTCGATAGTAGTATCAAATATGTTTGGGCATCGTGGTTATTCGGCAAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAACAAGAAACCATGGACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCGCACCATCTCTAATTGGGTAAGATGGATTTTGGGCTCACTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGAAAATATAGCAAACGTCATAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

9.67

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 344
AgsI TTSAA 2 cut(s) 368, 401
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 397
AxyI CCTNAGG 1 cut(s) 184
BanII GRGCYC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 216
BccI CCATC 3 cut(s) 281, 285, 382
BfaI CTAG 1 cut(s) 264
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 350
Bse21I CCTNAGG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 40
BsmI GAATGC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 2 cut(s) 66, 387
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 191, 249
BstDEI CTNAG 2 cut(s) 184, 441
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 270
BstMWI GCNNNNNNNGC 3 cut(s) 244, 437, 461
BstV1I GCAGC 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 191, 249
CfoI GCGC 1 cut(s) 270
CseI GACGC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 343
CviAII CATG 2 cut(s) 116, 222
CviJI RGCY 5 cut(s) 189, 303, 440, 455, 464
CviKI_1 RGCY 5 cut(s) 189, 303, 440, 455, 464
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 184, 441
Eam1104I CTCTTC 2 cut(s) 66, 387
EarI CTCTTC 2 cut(s) 66, 387
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 119, 225
FaiI YATR 5 cut(s) 117, 149, 223, 407, 419
FatI CATG 2 cut(s) 115, 221
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 205
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 270
Hin1II CATG 2 cut(s) 119, 225
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 397
Hpy188III TCNNGA 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 362, 439
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 84, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 437, 461
HpyF3I CTNAG 2 cut(s) 184, 441
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 2 cut(s) 119, 225
HspAI GCGC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 39
LmnI GCTCC 2 cut(s) 42, 53
LpnPI CCDG 5 cut(s) 53, 94, 261, 331, 339
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 414
MboII GAAGA 3 cut(s) 53, 252, 404
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 3 cut(s) 35, 280, 315
MnlI CCTC 4 cut(s) 112, 367, 373, 388
MroI TCCGGA 1 cut(s) 39
MspI CCGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 244, 437, 461
NcoI CCATGG 1 cut(s) 221
NlaIII CATG 2 cut(s) 119, 225
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 206
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SatI GCNGC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 344
SduI GDGCHC 1 cut(s) 305
SetI ASST 7 cut(s) 92, 123, 384, 399, 417, 450, 466
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 3 cut(s) 35, 280, 315
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 1 cut(s) 417
TaqI TCGA 1 cut(s) 131
TasI AATT 3 cut(s) 35, 280, 315
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 249
XapI RAATTY 1 cut(s) 35
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.