Rorug07G0293900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004437
Physical Location & Seq
Reverse (-)
28719568 .. 28720003
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0293900.1

Sequence Viewer

Length: 360 bp
ATGGCTTCTGGCTTCGTTTCAGCTCTTTGCCGGGTCCGTATGGATGTTGATTCTGTGGTCTCTGAAGCTCTAGCCATGCCCGAAAATCTCGAAACCGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCACTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAGTGGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.92

Weight (kDa)

4.94

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 29 - 116 1.8e-36 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 187, 274
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 5 cut(s) 23, 68, 233, 330, 339
AluI AGCT 5 cut(s) 23, 68, 233, 330, 339
Alw26I GTCTC 2 cut(s) 64, 167
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AspA2I CCTAGG 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 103, 259
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 34
AvrII CCTAGG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 64, 167
BfaI CTAG 3 cut(s) 71, 167, 230
BisI GCNGC 1 cut(s) 234
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 35, 135
BmrFI CCNGG 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 274
Bse3DI GCAATG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 49, 358
BseLI CCNNNNNNNGG 2 cut(s) 187, 274
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 187, 274
BsmAI GTCTC 2 cut(s) 64, 167
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 320
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 35, 135
BspT104I TTCGAA 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 49, 358
BstMAI GTCTC 2 cut(s) 64, 167
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 49, 358
Cac8I GCNNGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 34
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviAII CATG 2 cut(s) 76, 116
DdeI CTNAG 1 cut(s) 243
DraI TTTAAA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 79, 119
FaiI YATR 5 cut(s) 41, 77, 117, 185, 218
FatI CATG 2 cut(s) 75, 115
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 71, 167, 230
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 31
Hin1II CATG 2 cut(s) 79, 119
HinfI GANTC 2 cut(s) 50, 202
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 103, 259
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 2 cut(s) 101, 163
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 262, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 2 cut(s) 79, 119
LmnI GCTCC 2 cut(s) 133, 327
LpnPI CCDG 5 cut(s) 44, 150, 173, 178, 281
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 3 cut(s) 71, 167, 230
MaeIII GTNAC 2 cut(s) 238, 247
MboII GAAGA 1 cut(s) 197
MluCI AATT 2 cut(s) 256, 282
MnlI CCTC 2 cut(s) 238, 300
MseI TTAA 2 cut(s) 281, 342
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 32
NlaIII CATG 2 cut(s) 79, 119
NlaIV GGNNCC 2 cut(s) 35, 135
NmuCI GTSAC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 320
PceI AGGCCT 1 cut(s) 267
PfeI GAWTC 2 cut(s) 50, 202
PkrI GCNGC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 35, 135
PspPI GGNCC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 281, 342
SatI GCNGC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 32
SetI ASST 7 cut(s) 25, 70, 192, 235, 249, 332, 341
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 1 cut(s) 34
Sse9I AATT 2 cut(s) 256, 282
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 313
SspMI CTAG 3 cut(s) 71, 167, 230
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 90, 200, 320
TasI AATT 2 cut(s) 256, 282
TfiI GAWTC 2 cut(s) 50, 202
Tru1I TTAA 2 cut(s) 281, 342
Tru9I TTAA 2 cut(s) 281, 342
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 2 cut(s) 26, 340
VpaK11BI GGWCC 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 166
XspI CTAG 3 cut(s) 71, 167, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.