RLG00000001121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004437
Physical Location & Seq
Reverse (-)
10516859 .. 10517519
661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001121

Sequence Viewer

Length: 441 bp
ATGTTTGGGCATCGTGGTTATTCGGCGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAACAAGAAACCGTGGACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCGCACCATCTCTAATTGGGTAAGATGGATTTTAGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAATGTAGCAAAAGTCATAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTGATCATACAAGACTAAAAGAAATTGCTTTACTGATTGAACGAGTATCCGAACTGGCTGCTCAGGATGCTCAACTAAGATTTTATTCACAAGGTCTTAATTTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

8.96

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 2 cut(s) 221, 371
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 57, 389
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 37
BbvI GCAGC 2 cut(s) 69, 376
BccI CCATC 3 cut(s) 134, 138, 235
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 1 cut(s) 334
BfaI CTAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 2 cut(s) 58, 390
BlsI GCNGC 2 cut(s) 59, 391
BmcAI AGTACT 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 19, 388
BmuI ACTGGG 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 203, 390
Bse21I CCTNAGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 285, 407
BseNI ACTGG 2 cut(s) 203, 390
BseXI GCAGC 2 cut(s) 69, 376
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 286, 406
BspLI GGNNCC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 203, 390
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 75, 289
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 44, 102
BstDEI CTNAG 5 cut(s) 37, 294, 393, 407, 438
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 4 cut(s) 97, 290, 314, 398
BstV1I GCAGC 2 cut(s) 69, 376
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 44, 102
CfoI GCGC 1 cut(s) 123
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 6 cut(s) 42, 156, 293, 308, 317, 389
CviKI_1 RGCY 6 cut(s) 42, 156, 293, 308, 317, 389
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 5 cut(s) 37, 294, 393, 407, 438
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 37
FaiI YATR 2 cut(s) 272, 339
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 58, 390
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 2 cut(s) 58, 390
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 122
GluI GCNGC 2 cut(s) 58, 390
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 78, 253
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 2 cut(s) 78, 253
HpyAV CCTTC 2 cut(s) 215, 292
HpyCH4III ACNGT 2 cut(s) 75, 289
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 290, 314, 398
HpyF3I CTNAG 5 cut(s) 37, 294, 393, 407, 438
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 114, 184, 192, 371, 380
Lsp1109I GCAGC 2 cut(s) 69, 376
LweI GCATC 2 cut(s) 19, 388
MaeI CTAG 1 cut(s) 117
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 105, 257
MluCI AATT 4 cut(s) 133, 168, 354, 430
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 220, 226, 241
MseI TTAA 1 cut(s) 429
MwoI GCNNNNNNNGC 4 cut(s) 97, 290, 314, 398
NdeII GATC 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 59, 391
PspN4I GGNNCC 1 cut(s) 157
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 2 cut(s) 58, 390
Sau3AI GATC 1 cut(s) 334
ScaI AGTACT 1 cut(s) 197
SetI ASST 5 cut(s) 237, 252, 303, 319, 427
SfaNI GCATC 2 cut(s) 19, 388
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 133, 168, 354, 430
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 75, 289
TasI AATT 4 cut(s) 133, 168, 354, 430
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 102
TseI GCWGC 2 cut(s) 57, 389
TspRI CASTG 1 cut(s) 102
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.