Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Reverse (-)

14619801 .. 14623019

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCTGCAGGGACAGATACCCCATCTTCACTTTCCATATTAGATGGCAGTTACAGAAAGAACATAACTGTTACAAGGGACGAGAAATCAAATACTTTTGATAACATGAAGCAACCCAACATCGGCAAACCTCCCAGGCATGTATCAGCTATTAGGTACTGTGTCAGCTCTGCCCAGTTGGCTCCTGTTACTGAAATGGAGTTCGACAGTGGAGTTGTTAGCTCAAAATCCTCATCAGATAGTAATTCACCATTTGTACCTGTATTTCGGTCTGGAAGCTGTTCAGAGATTGGACCAAAACAATTTATGGAGGATGAGCATATCTGTATAGACAATATTCTTGAACATCTAGGATCTACTACAGACTTTCCTTCTTCTGGAGCTTTCTATGGGGTTTTTGATGGCCATGGGGGTACAGATGCAGCTTCTTTTATCAGAGAGAACATTTTGAGGTTTATAGTGGAGGATTCACATTTCCCTTTTTGTGCTAAGCAAGCTATTAAGAGTGCTTTTCTGAAGGCTGACCATGCTTTTGCTGACACTGGTACTCTTGATAGTTCCTCCGGTACCACTGCACTTACTGCCCTTATCTATGGAAGGACGATGCTGGTTGCCAATGCTGGAGATTGTCGAGCTGTTCTGGGAAGAAGAGGCAGAGCAGTGGAACTTTCCAAAGACCATAAACCAAATTGCGCCACAGAAAGATTAAGAATTGAAAAACTGGGAGGCGTGGTGTACGATGGATATCTCAACGGCCAATTGTCAGTGGCACGAGCACTTGGAGATTGGCACATGAAAGGATCCAAAGGTTCAACTTGTCCCTTAAGTGCAGAACCGGAGCTTGAGGAGACAATTCTGAGTGAGGAAGATGAGTTCTTGATCTTAGGCTGTGATGGGTTGTGGGATGTGATGAGCAGCCAGTGTGCAGTCACAATAGCAAGGAAAGAATTGATGCTTCACAATGATCCTGAAAGATGCTCACGAGAGCTTGTTAGGGAAGCTCTCAAGCGCGATACATGTGATAACTTGACCGTTGTAGTTGTATGTTTCTCCCCAGAACCACCGCCTCAGCTTGAGATCCCAAAGTTCAAGTTCAAGAGGAGTATATCAGCAGAAGGTCTGAATCTTCTGCAGGAGGTACTAAATAGTAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

386

Amino Acids

41.96

Weight (kDa)

5.31

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	92 - 342	1.7e-73	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AccII	CGCG	1 cut(s)	1011
AciI	CCGC	1 cut(s)	1064
AclWI	GGATC	5 cut(s)	361, 795, 808, 959, 1072
AcoI	YGGCCR	2 cut(s)	403, 754
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	7 cut(s)	158, 258, 415, 547, 568, 737, 1140
AfiI	CCNNNNNNNGG	2 cut(s)	122, 377
AflII	CTTAAG	1 cut(s)	823
AflIII	ACRYGT	1 cut(s)	1016
AgsI	TTSAA	5 cut(s)	344, 716, 813, 1090, 1096
AjnI	CCWGG	1 cut(s)	134
AloI	GAACNNNNNNTCC	2 cut(s)	857, 889
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	1 cut(s)	842
AlwI	GGATC	5 cut(s)	361, 795, 808, 959, 1072
AoxI	GGCC	2 cut(s)	403, 754
ApeKI	GCWGC	3 cut(s)	5, 422, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
Asp700I	GAANNNNTTC	1 cut(s)	280
Asp718I	GGTACC	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	695, 1011
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	800
BanI	GGYRCC	1 cut(s)	566
BauI	CACGAG	2 cut(s)	771, 981
Bbv12I	GWGCWC	1 cut(s)	778
BbvCI	CCTCAGC	1 cut(s)	1068
BbvI	GCAGC	2 cut(s)	434, 927
BccI	CCATC	5 cut(s)	31, 38, 395, 734, 887
BceAI	ACGGC	1 cut(s)	769
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	3 cut(s)	6, 360, 1130
BfrI	CTTAAG	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	6, 423, 916
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	3 cut(s)	7, 424, 917
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	183, 568, 802
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	2 cut(s)	169, 731
BmsI	GCATC	4 cut(s)	409, 594, 942, 965
BmuI	ACTGGG	2 cut(s)	169, 731
BpmI	CTGGAG	2 cut(s)	399, 642
Bpu10I	CCTNAGC	1 cut(s)	1068
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	3 cut(s)	863, 989, 1094
BsaBI	GATNNNNATC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	134, 406
BsaWI	WCCGGW	2 cut(s)	563, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 377
Bse1I	ACTGG	4 cut(s)	175, 547, 726, 919
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	134, 406
BseGI	GGATG	2 cut(s)	319, 910
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	2 cut(s)	122, 377
BseMII	CTCAG	2 cut(s)	848, 1082
BseNI	ACTGG	4 cut(s)	175, 547, 726, 919
BseRI	GAGGAG	2 cut(s)	860, 1114
BseXI	GCAGC	2 cut(s)	434, 927
BsgI	GTGCAG	3 cut(s)	558, 849, 945
Bsh1236I	CGCG	1 cut(s)	1011
BshFI	GGCC	2 cut(s)	405, 756
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	778
BsiSI	CCGG	2 cut(s)	564, 836
BslFI	GGGAC	3 cut(s)	25, 92, 804
BslI	CCNNNNNNNGG	2 cut(s)	122, 377
BsmAI	GTCTC	1 cut(s)	842
BsmFI	GGGAC	3 cut(s)	25, 92, 804
BsnI	GGCC	2 cut(s)	405, 756
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp143I	GATC	5 cut(s)	353, 800, 879, 964, 1077
Bsp1720I	GCTNAGC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	1064
BspANI	GGCC	2 cut(s)	405, 756
BspCNI	CTCAG	2 cut(s)	849, 1081
BspFNI	CGCG	1 cut(s)	1011
BspLI	GGNNCC	3 cut(s)	183, 568, 802
BspMAI	CTGCAG	2 cut(s)	10, 1134
BspPI	GGATC	5 cut(s)	361, 795, 808, 959, 1072
BspT107I	GGYRCC	1 cut(s)	566
BspTI	CTTAAG	1 cut(s)	823
BsrI	ACTGG	4 cut(s)	175, 547, 726, 919
BssECI	CCNNGG	2 cut(s)	134, 406
BssMI	GATC	5 cut(s)	353, 800, 879, 964, 1077
BssSI	CACGAG	2 cut(s)	771, 981
BssT1I	CCWWGG	1 cut(s)	406
Bst2BI	CACGAG	2 cut(s)	771, 981
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	4 cut(s)	70, 161, 209, 1033
Bst6I	CTCTTC	1 cut(s)	643
BstAFI	CTTAAG	1 cut(s)	823
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	489, 857, 883, 1068
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	319, 910
BstFNI	CGCG	1 cut(s)	1011
BstHHI	GCGC	2 cut(s)	695, 1011
BstKTI	GATC	5 cut(s)	356, 803, 882, 967, 1080
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	5 cut(s)	353, 800, 879, 964, 1077
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 494, 527, 581
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	2 cut(s)	143, 1020
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	3 cut(s)	6, 360, 1130
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	2 cut(s)	434, 927
BstX2I	RGATCY	3 cut(s)	353, 800, 1077
BstYI	RGATCY	3 cut(s)	353, 800, 1077
BsuRI	GGCC	2 cut(s)	405, 756
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	319, 910
BtsI	GCAGTG	2 cut(s)	570, 666
BtsIMutI	CAGTG	6 cut(s)	214, 540, 570, 666, 771, 926
Cac8I	GCNNGC	1 cut(s)	495
CfoI	GCGC	2 cut(s)	695, 1011
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	7 cut(s)	157, 257, 414, 546, 567, 736, 1139
CviAII	CATG	6 cut(s)	106, 140, 407, 527, 793, 1017
CviQI	GTAC	7 cut(s)	157, 257, 414, 546, 567, 736, 1139
DdeI	CTNAG	4 cut(s)	489, 857, 883, 1068
DpnI	GATC	5 cut(s)	355, 802, 881, 966, 1079
DpnII	GATC	5 cut(s)	353, 800, 879, 964, 1077
EaeI	YGGCCR	2 cut(s)	403, 754
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	6 cut(s)	109, 143, 410, 530, 796, 1020
FaqI	GGGAC	3 cut(s)	25, 92, 804
FatI	CATG	6 cut(s)	105, 139, 406, 526, 792, 1016
Fnu4HI	GCNGC	3 cut(s)	6, 423, 916
FokI	GGATG	2 cut(s)	326, 917
Fsp4HI	GCNGC	3 cut(s)	6, 423, 916
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	2 cut(s)	694, 1010
GluI	GCNGC	3 cut(s)	6, 423, 916
GsuI	CTGGAG	2 cut(s)	399, 642
HaeIII	GGCC	2 cut(s)	405, 756
HapII	CCGG	2 cut(s)	564, 836
HhaI	GCGC	2 cut(s)	695, 1011
Hin1II	CATG	6 cut(s)	109, 143, 410, 530, 796, 1020
Hin6I	GCGC	2 cut(s)	693, 1009
HinP1I	GCGC	2 cut(s)	693, 1009
HinfI	GANTC	2 cut(s)	467, 1123
HpaII	CCGG	2 cut(s)	564, 836
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	6 cut(s)	238, 286, 437, 516, 858, 1122
Hpy188III	TCNNGA	8 cut(s)	273, 341, 378, 551, 877, 968, 981, 1096
Hpy8I	GTNNAC	1 cut(s)	736
HpyAV	CCTTC	4 cut(s)	381, 511, 591, 1109
HpyCH4III	ACNGT	4 cut(s)	70, 161, 209, 1033
HpyCH4V	TGCA	6 cut(s)	8, 422, 575, 830, 926, 1132
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 494, 527, 581
HpyF3I	CTNAG	4 cut(s)	489, 857, 883, 1068
Hsp92II	CATG	6 cut(s)	109, 143, 410, 530, 796, 1020
HspAI	GCGC	2 cut(s)	693, 1009
KpnI	GGTACC	1 cut(s)	570
Kzo9I	GATC	5 cut(s)	353, 800, 879, 964, 1077
LmnI	GCTCC	3 cut(s)	187, 380, 838
Lsp1109I	GCAGC	2 cut(s)	434, 927
LweI	GCATC	4 cut(s)	409, 594, 942, 965
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	4 cut(s)	50, 70, 187, 928
MalI	GATC	5 cut(s)	355, 802, 881, 966, 1079
MboI	GATC	5 cut(s)	353, 800, 879, 964, 1077
MboII	GAAGA	6 cut(s)	18, 366, 657, 660, 878, 1118
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	3 cut(s)	353, 800, 1077
MhlI	GDGCHC	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	7 cut(s)	244, 302, 688, 711, 758, 852, 947
MluNI	TGGCCA	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	501, 707, 824
Msp20I	TGGCCA	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	823
MspI	CCGG	2 cut(s)	564, 836
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	4 cut(s)	179, 494, 527, 581
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	353, 800, 879, 964, 1077
NlaIII	CATG	6 cut(s)	109, 143, 410, 530, 796, 1020
NlaIV	GGNNCC	3 cut(s)	183, 568, 802
NmuCI	GTSAC	1 cut(s)	928
NspI	RCATGY	2 cut(s)	143, 1020
PciI	ACATGT	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	467, 1123
PkrI	GCNGC	3 cut(s)	7, 424, 917
PscI	ACATGT	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	183, 568, 802
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	2 cut(s)	10, 1134
PsuI	RGATCY	3 cut(s)	353, 800, 1077
RsaI	GTAC	7 cut(s)	158, 258, 415, 547, 568, 737, 1140
RsaNI	GTAC	7 cut(s)	157, 257, 414, 546, 567, 736, 1139
SaqAI	TTAA	3 cut(s)	501, 707, 824
SatI	GCNGC	3 cut(s)	6, 423, 916
Sau3AI	GATC	5 cut(s)	353, 800, 879, 964, 1077
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	4 cut(s)	409, 594, 942, 965
SfcI	CTRYAG	3 cut(s)	6, 360, 1130
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	4 cut(s)	823, 842, 1004, 1073
SmoI	CTYRAG	4 cut(s)	823, 842, 1004, 1073
Sse9I	AATT	7 cut(s)	244, 302, 688, 711, 758, 852, 947
SsiI	CCGC	1 cut(s)	1064
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	4 cut(s)	70, 161, 209, 1033
TaqI	TCGA	2 cut(s)	204, 631
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	7 cut(s)	244, 302, 688, 711, 758, 852, 947
TfiI	GAWTC	2 cut(s)	467, 1123
Tru1I	TTAA	3 cut(s)	501, 707, 824
Tru9I	TTAA	3 cut(s)	501, 707, 824
TscAI	CASTG	6 cut(s)	214, 547, 577, 666, 771, 926
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	3 cut(s)	5, 422, 915
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	2 cut(s)	122, 809
TspRI	CASTG	6 cut(s)	214, 547, 577, 666, 771, 926
Vha464I	CTTAAG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	2 cut(s)	143, 1020
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.