pycom06g00590

phosphatase 2C

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
544847 .. 548711
3865 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00590.2

Sequence Viewer

Length: 1182 bp
ATGACTTTTGATCTGCCTGTGAGCATGGCGGCCGGTACTGAATTTTCGGCTCCTTCTAGCGTGCTGGAAGTTGGGTGCAATAAGGATAATGCAGCGGCATTGGAAGATGAGGTTTCTGATAGTTTGAGTGATTTGAAACAAATGACAAATCGAAAGCCTCCGCGGTATTCCTCAGCCTTGCGGCACAGCGTGAGCTCCATCGGGCATCTGACAGCAGATGATTTGTTGGATGATGACAGCTTATCCACTAAGTCGCCCTCCAATCAAAAGTCAGGGTTTCTCCCTGTGTTCCGTTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAGTACATGGAGGATGAACACGTATGCATAGATAATCTTATTGATCATTTTGGTGAAACTGATGACTTCTCTTCACCTGGAGCTTTCTATGGGGTATTTGATGGTCATGGAGGCACAGATGCAGCATCGTTTATCAGAAAAAACATCCTTAAATACATAGTTGAGGATTCCCATTTTCCAAGGTGTTTGGACAGGGCCATTAAGAGTGCTTATCTGAAAGCTGATTATGCATTTGCAGATGCGAATTCTCTTGACATCTCCTCTGGCACTACTGCTCTGACTTCCCTGATTTGGGGAAGGACCCTGATGGTTGCTAATGCTGGGGATTGTCGAGCTGTGTTGGGGAGGCGGGGTAGAGCAGTAGAGATGTCAAAAGACCACAAACCAAATTGTAAATCTGAAAGACTAAGAATTGAGAATCTTGGCGGTGTCATATATGATGGCTATCTCAGTGGCCAGTTATCTGTGGCCCGTGCTCTAGGAGACTGGCACATGAAGGGTGCAAAAGGTTCTGCCTGTCCTCTAAGTGCAGAGCCAGAGTTGCAGGAGACACGCCTAACTGAAGATGATGAGTTTTTGATAATGGGGTGTGATGGCTTGTGGGACGTAATGAGCAGCCAATGCGCTGTCACAATGACGAGGAAAGAATTGATGGTCCACAATGATCCTGAGAGATGCTCAAGAGAACTGGTCAGGGAGGCGCTCATGCGCAACACATGTGATAATTTAACTGTTATTGTGGTTTGTTTTCTACCGGACCCTCCCCCTAAAATAGAGATACCGCAAACCAGAGTTCGAAGGAGCATATCTTTAGAAGGGCTAAATTTATTGAAGGGTGTACTGGACTGTAACTCATGA

Protein Analysis

394

Amino Acids

43.05

Weight (kDa)

5.16

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1034
AccII CGCG 1 cut(s) 163
AciI CCGC 8 cut(s) 29, 95, 161, 163, 181, 673, 750, 1106
AclWI GGATC 1 cut(s) 983
AcoI YGGCCR 2 cut(s) 30, 778
AcsI RAATTY 3 cut(s) 41, 568, 1147
AcuI CTGAAG 1 cut(s) 906
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 3 cut(s) 37, 329, 1164
AfiI CCNNNNNNNGG 2 cut(s) 615, 616
AflIII ACRYGT 2 cut(s) 343, 1040
AgsI TTSAA 2 cut(s) 136, 1156
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 5 cut(s) 195, 240, 407, 545, 659
AluI AGCT 5 cut(s) 195, 240, 407, 545, 659
Alw21I GWGCWC 2 cut(s) 197, 802
Alw26I GTCTC 2 cut(s) 801, 866
AlwI GGATC 1 cut(s) 983
AoxI GGCC 4 cut(s) 30, 519, 778, 792
ApeKI GCWGC 3 cut(s) 92, 446, 939
ApoI RAATTY 3 cut(s) 41, 568, 1147
AspLEI GCGC 3 cut(s) 950, 1027, 1035
AspS9I GGNCC 6 cut(s) 317, 519, 624, 793, 979, 1081
AsuHPI GGTGA 2 cut(s) 389, 390
AsuII TTCGAA 1 cut(s) 1120
AvaII GGWCC 4 cut(s) 317, 624, 979, 1081
BalI TGGCCA 1 cut(s) 780
BanII GRGCYC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 197, 802
BbvCI CCTCAGC 1 cut(s) 172
BbvI GCAGC 3 cut(s) 104, 458, 951
BccI CCATC 6 cut(s) 206, 419, 625, 758, 911, 970
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 801, 866
BfaI CTAG 2 cut(s) 57, 803
BfoI RGCGCY 1 cut(s) 1028
BisI GCNGC 6 cut(s) 30, 93, 96, 182, 447, 940
BlsI GCNGC 6 cut(s) 31, 94, 97, 183, 448, 941
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 4 cut(s) 317, 624, 979, 1081
BmgT120I GGNCC 6 cut(s) 317, 519, 624, 793, 979, 1081
BmiI GGNNCC 3 cut(s) 51, 626, 1083
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 5 cut(s) 214, 433, 458, 553, 989
BplI GAGNNNNNCTC 2 cut(s) 986, 1018
BpmI CTGGAG 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 1120
BpuEI CTTGAG 1 cut(s) 988
BsaAI YACGTR 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 161, 503
BsaWI WCCGGW 1 cut(s) 1078
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 615, 616
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 4 cut(s) 781, 815, 1017, 1170
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 161, 503
BseGI GGATG 3 cut(s) 235, 343, 468
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 2 cut(s) 615, 616
BseMII CTCAG 3 cut(s) 186, 787, 984
BseNI ACTGG 4 cut(s) 781, 815, 1017, 1170
BseRI GAGGAG 1 cut(s) 574
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 104, 458, 951
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 32, 521, 780, 794
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 197, 802
BsiSI CCGG 2 cut(s) 33, 1079
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 615, 616
BsmAI GTCTC 2 cut(s) 801, 866
BsmFI GGGAC 1 cut(s) 941
BsnI GGCC 4 cut(s) 32, 521, 780, 794
Bsp119I TTCGAA 1 cut(s) 1120
Bsp1286I GDGCHC 2 cut(s) 197, 802
Bsp143I GATC 3 cut(s) 10, 367, 988
BspACI CCGC 8 cut(s) 29, 95, 161, 163, 181, 673, 750, 1106
BspANI GGCC 4 cut(s) 32, 521, 780, 794
BspCNI CTCAG 3 cut(s) 185, 786, 985
BspFNI CGCG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 1178
BspLI GGNNCC 3 cut(s) 51, 626, 1083
BspPI GGATC 1 cut(s) 983
BspT104I TTCGAA 1 cut(s) 1120
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 4 cut(s) 781, 815, 1017, 1170
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 161, 503
BssMI GATC 3 cut(s) 10, 367, 988
BssT1I CCWWGG 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 327, 1057, 1172
Bst6I CTCTTC 1 cut(s) 400
BstAPI GCANNNNNTGC 1 cut(s) 945
BstBAI YACGTR 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 1120
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 6 cut(s) 172, 249, 731, 773, 848, 993
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 3 cut(s) 235, 343, 468
BstFNI CGCG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 1028
BstHHI GCGC 3 cut(s) 950, 1027, 1035
BstKTI GATC 3 cut(s) 13, 370, 991
BstMAI GTCTC 2 cut(s) 801, 866
BstMBI GATC 3 cut(s) 10, 367, 988
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 551, 865, 945
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 1044
BstSCI CCNGG 1 cut(s) 400
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 3 cut(s) 104, 458, 951
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 4 cut(s) 32, 521, 780, 794
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 235, 343, 468
BtsIMutI CAGTG 1 cut(s) 781
Cac8I GCNNGC 1 cut(s) 62
CciI TCATGA 1 cut(s) 1178
CfoI GCGC 3 cut(s) 950, 1027, 1035
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 6 cut(s) 317, 519, 624, 793, 979, 1081
Cfr42I CCGCGG 1 cut(s) 164
Csp6I GTAC 3 cut(s) 36, 328, 1163
CviAII CATG 7 cut(s) 25, 331, 431, 817, 1030, 1041, 1179
CviQI GTAC 3 cut(s) 36, 328, 1163
DdeI CTNAG 6 cut(s) 172, 249, 731, 773, 848, 993
DpnI GATC 3 cut(s) 12, 369, 990
DpnII GATC 3 cut(s) 10, 367, 988
DraIII CACNNNGTG 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 30, 778
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Ecl136II GAGCTC 1 cut(s) 195
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 4 cut(s) 317, 624, 979, 1081
Eco52I CGGCCG 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 2 cut(s) 317, 624
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 503
EcoT22I ATGCAT 2 cut(s) 353, 556
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 7 cut(s) 28, 334, 434, 820, 1033, 1044, 1182
FaqI GGGAC 1 cut(s) 941
FatI CATG 7 cut(s) 24, 330, 430, 816, 1029, 1040, 1178
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 6 cut(s) 30, 93, 96, 182, 447, 940
FokI GGATG 3 cut(s) 242, 350, 455
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 6 cut(s) 30, 93, 96, 182, 447, 940
FspBI CTAG 2 cut(s) 57, 803
FspI TGCGCA 1 cut(s) 1034
GlaI GCGC 3 cut(s) 949, 1026, 1034
GluI GCNGC 6 cut(s) 30, 93, 96, 182, 447, 940
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 1028
HaeIII GGCC 4 cut(s) 32, 521, 780, 794
HapII CCGG 2 cut(s) 33, 1079
HhaI GCGC 3 cut(s) 950, 1027, 1035
Hin1II CATG 7 cut(s) 28, 334, 434, 820, 1033, 1044, 1182
Hin6I GCGC 3 cut(s) 948, 1025, 1033
HinP1I GCGC 3 cut(s) 948, 1025, 1033
HinfI GANTC 2 cut(s) 491, 742
HpaII CCGG 2 cut(s) 33, 1079
HphI GGTGA 2 cut(s) 389, 390
Hpy166II GTNNAC 2 cut(s) 982, 1163
Hpy188I TCNGA 6 cut(s) 118, 210, 461, 540, 603, 724
Hpy188III TCNNGA 5 cut(s) 297, 575, 992, 1005, 1179
Hpy8I GTNNAC 2 cut(s) 982, 1163
HpyAV CCTTC 6 cut(s) 63, 615, 814, 1116, 1133, 1150
HpyCH4III ACNGT 3 cut(s) 327, 1057, 1172
HpyCH4IV ACGT 2 cut(s) 345, 930
HpyCH4V TGCA 9 cut(s) 78, 92, 351, 446, 554, 560, 827, 854, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 865, 945
HpyF3I CTNAG 6 cut(s) 172, 249, 731, 773, 848, 993
HpySE526I ACGT 2 cut(s) 345, 930
Hsp92II CATG 7 cut(s) 28, 334, 434, 820, 1033, 1044, 1182
HspAI GCGC 3 cut(s) 948, 1025, 1033
Ksp22I TGATCA 1 cut(s) 367
KspI CCGCGG 1 cut(s) 164
Kzo9I GATC 3 cut(s) 10, 367, 988
LmnI GCTCC 4 cut(s) 55, 200, 404, 1125
Lsp1109I GCAGC 3 cut(s) 104, 458, 951
LweI GCATC 5 cut(s) 214, 433, 458, 553, 989
MaeI CTAG 2 cut(s) 57, 803
MaeII ACGT 2 cut(s) 345, 930
MaeIII GTNAC 2 cut(s) 952, 1172
MalI GATC 3 cut(s) 12, 369, 990
MboI GATC 3 cut(s) 10, 367, 988
MboII GAAGA 3 cut(s) 116, 387, 899
MhlI GDGCHC 2 cut(s) 197, 802
MlsI TGGCCA 1 cut(s) 780
MluCI AATT 7 cut(s) 41, 568, 712, 735, 971, 1048, 1147
MluNI TGGCCA 1 cut(s) 780
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 780
Mph1103I ATGCAT 2 cut(s) 353, 556
MscI TGGCCA 1 cut(s) 780
MseI TTAA 3 cut(s) 474, 525, 1052
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 780
MspA1I CMGCKG 2 cut(s) 95, 163
MspI CCGG 2 cut(s) 33, 1079
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 551, 865, 945
NdeII GATC 3 cut(s) 10, 367, 988
NlaIII CATG 7 cut(s) 28, 334, 434, 820, 1033, 1044, 1182
NlaIV GGNNCC 3 cut(s) 51, 626, 1083
NmuCI GTSAC 1 cut(s) 952
NsbI TGCGCA 1 cut(s) 1034
NsiI ATGCAT 2 cut(s) 353, 556
NspI RCATGY 1 cut(s) 1044
NspV TTCGAA 1 cut(s) 1120
PagI TCATGA 1 cut(s) 1178
PciI ACATGT 1 cut(s) 1040
PfeI GAWTC 2 cut(s) 491, 742
PkrI GCNGC 6 cut(s) 31, 94, 97, 183, 448, 941
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 2 cut(s) 317, 624
PscI ACATGT 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 197
Psp5II RGGWCCY 2 cut(s) 317, 624
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 3 cut(s) 51, 626, 1083
PspPI GGNCC 6 cut(s) 317, 519, 624, 793, 979, 1081
PspPPI RGGWCCY 2 cut(s) 317, 624
RsaI GTAC 3 cut(s) 37, 329, 1164
RsaNI GTAC 3 cut(s) 36, 328, 1163
RseI CAYNNNNRTG 1 cut(s) 375
SacI GAGCTC 1 cut(s) 197
SacII CCGCGG 1 cut(s) 164
SaqAI TTAA 3 cut(s) 474, 525, 1052
SatI GCNGC 6 cut(s) 30, 93, 96, 182, 447, 940
Sau3AI GATC 3 cut(s) 10, 367, 988
Sau96I GGNCC 6 cut(s) 317, 519, 624, 793, 979, 1081
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 197, 802
SfaNI GCATC 5 cut(s) 214, 433, 458, 553, 989
Sfr303I CCGCGG 1 cut(s) 164
SfuI TTCGAA 1 cut(s) 1120
SgrBI CCGCGG 1 cut(s) 164
SinI GGWCC 4 cut(s) 317, 624, 979, 1081
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
Sse9I AATT 7 cut(s) 41, 568, 712, 735, 971, 1048, 1147
SsiI CCGC 8 cut(s) 29, 95, 161, 163, 181, 673, 750, 1106
SspMI CTAG 2 cut(s) 57, 803
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 3 cut(s) 327, 1057, 1172
TaiI ACGT 2 cut(s) 348, 933
TaqI TCGA 3 cut(s) 151, 655, 1120
TasI AATT 7 cut(s) 41, 568, 712, 735, 971, 1048, 1147
TatI WGTACW 2 cut(s) 327, 1162
TauI GCSGC 3 cut(s) 32, 98, 184
TfiI GAWTC 2 cut(s) 491, 742
Tru1I TTAA 3 cut(s) 474, 525, 1052
Tru9I TTAA 3 cut(s) 474, 525, 1052
TscAI CASTG 1 cut(s) 781
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 3 cut(s) 92, 446, 939
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 2 cut(s) 354, 833
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 781
VpaK11BI GGWCC 4 cut(s) 317, 624, 979, 1081
XapI RAATTY 3 cut(s) 41, 568, 1147
XceI RCATGY 1 cut(s) 1044
XspI CTAG 2 cut(s) 57, 803
Zsp2I ATGCAT 2 cut(s) 353, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.