Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Forward (+)

19255860 .. 19256870

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCGATTTCATCTTCATACCCAACGGCACTGCCGTTAGGTATGAAGATGTCTTTCATCCCCACCGATTCACAACTCATCAGGTTTATTCTCCACGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCCTGGGAAATCTGGGACAGATATCTAGGGTTTATAAATCAATACAACCCAGATGAACTCTACTTCTTCATGCCTTCGCTGAAGAAATTGAGCCGGTCTAATGGTGGTTCAAGGATCAGCCGAACAATTGGCGGTGGTAGTTGGACTCAGAAGGAGCCAATCAAGTTTGTGTGCGACGAGGGCAGATCAATTGGGGTGAAGAGAAAGCTTAGATATCACAACCAAGGGTTAGATCAACATGTGCAGTGGTGTTTGGATGAGTATACTAGTGTTGAGGTTGCTAATTCATGTGCAATTTTCCGGCTCCGGAAAAACGAGCGACAATACAAATCACTGTGTGGTATTTGTGTGGAAGACTTCTTTCAGCCTCTACCATTAGGTATGAAGATTTTATTCCGCCCCACGGACTCACAATTGATTAGGTACTTTCTTGGTTTTGATATTGCCCCAGATTTTATTGTTTATGATTGTGATTTGTTTGGACAGGAAGAGCCTTGGGAAATTTGGGACAGGTATTCATCGGTTAAAAACCACCCAGATCTCCTCTACTTTTTCACATCATCACTGGGCTCCAAGGGGAGGGTTTATAATTTTGGTCGAAGAGTTGGGTCTGGTACATGGAACCAAAAGGAGGCTGCCAAATTGGTGTATGATGATGAAGGCGAAAGAAAGCCGATTGGGAGAAAGAGGAAACTCAGATATGTTAACCAAGGCTCTGTGCATCACGGGGAGTGGTATTTGGAAGAGTACACAAGCCTTGTTGATGAGGGTGCAATTTTGCTTCTTCGAAAAAACGAGCGGTACAAAGCACCGGCTTCATCAGGAATTCCAAGTGAAAAGAAGAGGAAACACAGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

336

Amino Acids

39.04

Weight (kDa)

8.68

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 139	4.5e-15	No apical meristem (NAM) protein
NAM	PF02365	181 - 301	2.1e-13	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	185, 738
AccBSI	CCGCTC	1 cut(s)	949
AccI	GTMKAC	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	3 cut(s)	282, 547, 949
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	109, 651, 975
AcuI	CTGAAG	1 cut(s)	251
AdeI	CACNNNGTG	1 cut(s)	488
AfaI	GTAC	4 cut(s)	575, 766, 899, 953
AfiI	CCNNNNNNNGG	3 cut(s)	553, 729, 781
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	261
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	141, 152
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	3 cut(s)	109, 651, 975
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	937
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	153, 722
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	772
BceAI	ACGGC	2 cut(s)	19, 42
BciT130I	CCWGG	2 cut(s)	143, 154
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	3 cut(s)	176, 417, 1009
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	2 cut(s)	143, 154
BmiI	GGNNCC	4 cut(s)	306, 455, 721, 773
BmrFI	CCNGG	2 cut(s)	143, 154
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	1 cut(s)	880
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	937
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	7 cut(s)	152, 153, 373, 552, 644, 723, 859
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	3 cut(s)	553, 729, 781
Bse118I	RCCGGY	2 cut(s)	243, 961
Bse1I	ACTGG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	143, 154
BseDI	CCNNGG	7 cut(s)	152, 153, 373, 552, 644, 723, 859
BseGI	GGATG	2 cut(s)	57, 412
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	553, 729, 781
BseMII	CTCAG	2 cut(s)	311, 859
BseNI	ACTGG	1 cut(s)	720
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	4 cut(s)	244, 451, 457, 962
BslFI	GGGAC	2 cut(s)	179, 671
BslI	CCNNNNNNNGG	3 cut(s)	553, 729, 781
BsmFI	GGGAC	2 cut(s)	179, 671
BsnI	GGCC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	937
Bsp1286I	GDGCHC	2 cut(s)	153, 722
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	130, 264, 335, 382, 688
BspACI	CCGC	3 cut(s)	282, 547, 949
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	310, 858
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	4 cut(s)	306, 455, 721, 773
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	2 cut(s)	141, 633
BspT104I	TTCGAA	1 cut(s)	937
BsrBI	CCGCTC	1 cut(s)	949
BsrFI	RCCGGY	2 cut(s)	243, 961
BsrI	ACTGG	1 cut(s)	720
BssAI	RCCGGY	2 cut(s)	243, 961
BssECI	CCNNGG	7 cut(s)	152, 153, 373, 552, 644, 723, 859
BssMI	GATC	5 cut(s)	130, 264, 335, 382, 688
BssNAI	GTATAC	1 cut(s)	414
BssT1I	CCWWGG	4 cut(s)	373, 644, 723, 859
Bst1107I	GTATAC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	143, 154
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	6 cut(s)	141, 344, 633, 745, 888, 986
BstBI	TTCGAA	1 cut(s)	937
BstDEI	CTNAG	3 cut(s)	297, 359, 845
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	57, 412
BstKTI	GATC	5 cut(s)	133, 267, 338, 385, 691
BstMBI	GATC	5 cut(s)	130, 264, 335, 382, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	2 cut(s)	143, 154
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	141, 152
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BstZ17I	GTATAC	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	57, 412
BtsI	GCAGTG	2 cut(s)	29, 401
BtsIMutI	CAGTG	4 cut(s)	29, 401, 482, 713
Cfr10I	RCCGGY	2 cut(s)	243, 961
Csp6I	GTAC	4 cut(s)	574, 765, 898, 952
CviAII	CATG	4 cut(s)	220, 389, 438, 768
CviQI	GTAC	4 cut(s)	574, 765, 898, 952
DdeI	CTNAG	3 cut(s)	297, 359, 845
DpnI	GATC	5 cut(s)	132, 266, 337, 384, 690
DpnII	GATC	5 cut(s)	130, 264, 335, 382, 688
DraIII	CACNNNGTG	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	6 cut(s)	141, 344, 633, 745, 888, 986
EarI	CTCTTC	6 cut(s)	141, 344, 633, 745, 888, 986
EciI	GGCGGA	1 cut(s)	536
Eco130I	CCWWGG	4 cut(s)	373, 644, 723, 859
Eco24I	GRGCYC	2 cut(s)	153, 722
Eco32I	GATATC	2 cut(s)	173, 365
Eco57I	CTGAAG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	975
EcoRII	CCWGG	2 cut(s)	141, 152
EcoRV	GATATC	2 cut(s)	173, 365
EcoT14I	CCWWGG	4 cut(s)	373, 644, 723, 859
EcoT38I	GRGCYC	2 cut(s)	153, 722
ErhI	CCWWGG	4 cut(s)	373, 644, 723, 859
FaeI	CATG	4 cut(s)	223, 392, 441, 771
FaqI	GGGAC	2 cut(s)	179, 671
FatI	CATG	4 cut(s)	219, 388, 437, 767
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	2 cut(s)	44, 419
FriOI	GRGCYC	2 cut(s)	153, 722
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	3 cut(s)	176, 417, 1009
GluI	GCNGC	1 cut(s)	786
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	4 cut(s)	244, 451, 457, 962
Hin1II	CATG	4 cut(s)	223, 392, 441, 771
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	4 cut(s)	68, 98, 295, 557
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	4 cut(s)	244, 451, 457, 962
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	414, 856, 900
Hpy188I	TCNGA	2 cut(s)	300, 848
Hpy188III	TCNNGA	2 cut(s)	457, 972
Hpy8I	GTNNAC	3 cut(s)	414, 856, 900
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	3 cut(s)	234, 295, 803
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4V	TGCA	4 cut(s)	394, 443, 871, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	3 cut(s)	297, 359, 845
Hsp92II	CATG	4 cut(s)	223, 392, 441, 771
Kpn2I	TCCGGA	1 cut(s)	456
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	5 cut(s)	130, 264, 335, 382, 688
LguI	GCTCTTC	2 cut(s)	141, 633
LmnI	GCTCC	3 cut(s)	304, 459, 725
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	880
MaeI	CTAG	3 cut(s)	176, 417, 1009
MalI	GATC	5 cut(s)	132, 266, 337, 384, 690
MbiI	CCGCTC	1 cut(s)	949
MboI	GATC	5 cut(s)	130, 264, 335, 382, 688
MfeI	CAATTG	3 cut(s)	276, 339, 563
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	2 cut(s)	153, 722
MlsI	TGGCCA	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	289, 551
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	9 cut(s)	322, 418, 528, 704, 723, 775, 831, 910, 987
Mox20I	TGGCCA	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	2 cut(s)	675, 855
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	4 cut(s)	244, 451, 457, 962
MspR9I	CCNGG	2 cut(s)	143, 154
MunI	CAATTG	3 cut(s)	276, 339, 563
MvaI	CCWGG	2 cut(s)	143, 154
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	5 cut(s)	130, 264, 335, 382, 688
NlaIII	CATG	4 cut(s)	223, 392, 441, 771
NlaIV	GGNNCC	4 cut(s)	306, 455, 721, 773
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	937
PasI	CCCWGGG	1 cut(s)	153
PciI	ACATGT	1 cut(s)	388
PciSI	GCTCTTC	2 cut(s)	141, 633
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	68, 98
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	2 cut(s)	289, 551
PpsI	GAGTC	2 cut(s)	289, 551
PscI	ACATGT	1 cut(s)	388
PsiI	TTATAA	2 cut(s)	185, 738
Psp6I	CCWGG	2 cut(s)	141, 152
PspGI	CCWGG	2 cut(s)	141, 152
PspN4I	GGNNCC	4 cut(s)	306, 455, 721, 773
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	4 cut(s)	575, 766, 899, 953
RsaNI	GTAC	4 cut(s)	574, 765, 898, 952
SapI	GCTCTTC	2 cut(s)	141, 633
SaqAI	TTAA	2 cut(s)	675, 855
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	5 cut(s)	130, 264, 335, 382, 688
SchI	GAGTC	2 cut(s)	289, 551
ScrFI	CCNGG	2 cut(s)	143, 154
SduI	GDGCHC	2 cut(s)	153, 722
SetI	ASST	7 cut(s)	43, 86, 360, 429, 532, 575, 665
SfaNI	GCATC	1 cut(s)	880
SfuI	TTCGAA	1 cut(s)	937
SpeI	ACTAGT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	282, 547, 949
SspMI	CTAG	3 cut(s)	176, 417, 1009
StyD4I	CCNGG	2 cut(s)	141, 152
StyI	CCWWGG	4 cut(s)	373, 644, 723, 859
TaaI	ACNGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	5, 748, 937
TatI	WGTACW	1 cut(s)	897
TfiI	GAWTC	2 cut(s)	68, 98
Tru1I	TTAA	2 cut(s)	675, 855
Tru9I	TTAA	2 cut(s)	675, 855
TscAI	CASTG	4 cut(s)	36, 401, 489, 720
TseI	GCWGC	1 cut(s)	785
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	4 cut(s)	36, 401, 489, 720
XapI	RAATTY	3 cut(s)	109, 651, 975
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	3 cut(s)	176, 417, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.