Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Reverse (-)

17173017 .. 17176299

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCGAGTGAAGATGGCTGCCAGTATGGATTTTTCGCCTCCGACTACCATATTTGAAGGTGTTTGCTACAATGACAACATGTCAGCGTTGGATGATCATGATGAGAATATCCACAGTTTGAAGCATATTCCGAATGGAAAGCCTCCGAGGGTAATGCGGCACAGTTTGAGCTCCATGAGGTTGCTCTCCCCTGAGGATTTGTTGGAAGTTGGGGTTGTAGCCAGTAAGTCACCGTCGAATGAAAATACAAACTTTCTCCCAGTGTTCCGATCAGGAAGCTGTGCTGAAAGAGGACCGAAACAGTACATGGAGGATGAACATGTTTGTGTCGATAATCTTGTTGAACATCTAGGTGAAACTTCTGACTTCCCTTTGCCTGGTGCTTTCTATGGGGTATTTGACGGCCATGGAGGTACAGATGCAGCATTGTTTATCCGAAACAATATTCTTAGATTCATAGTTGAGGATTCTCATTTTCCAACTTGTTTGGAGAGGGCTATTAAGAGTGCCTACGTGAAAGCTGATCATGCATTTGCAGATGCAAGTTCTCTTGATATCTCCTCTGGTACCACTGCTCTGACTGCCCTTATTTCGGGAAGGACCCTAATAATTGCCAATGCTGGGGACTGTCGAGCTGTGATGGGAAAAAGGGGTAGAGCAATAGAGATGTCAAAAGACCACAAACCAAATTGTGCATCTGAAAAGCTAAGAATTGAGAAGCTTGGTGGTGTGATTTATGACGGGTACCTCAATGGACAATTATCTGTGGCTCGTGCTCTAGGAGATTGGCACATGAAGGGACCTAAAGGCTCTGCATGCCCTCTAAGTGCAGATCCTGAGTTGCAGGAGACATGCCTGACCGAGGAAGATGAGTTTTTGATAATGGGGTGTGACGGTTTGTGGGATGTAATGAGTAGCCAATGTGCTGTGACAATGGCGAGGAAAGAACTGATGATCCATAATGATCCTGAAAGATGCTCAAGAGAACTGGTCAGAGAGGCACTCAAGCGTCATACTTGTGATAATTTAACTGTTATTGTGGTTTGTTTTTCCCCAGATGCACCCCCTCGGATAGAGGTTCCTCAAAGCCGAGTCCGAAGGAGCATTTCTGCAGAAGGGCTTAATTTGCTGAAGGGTGTACTGGACTGCAACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061392 GO:0061416 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097305 GO:0104004 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

386

Amino Acids

42.21

Weight (kDa)

5.57

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	91 - 342	8.6e-72	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	566, 744
AccB1I	GGYRCC	2 cut(s)	566, 744
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	3 cut(s)	827, 949, 959
AcoI	YGGCCR	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	1151
AfaI	GTAC	5 cut(s)	305, 415, 568, 746, 1140
AfiI	CCNNNNNNNGG	4 cut(s)	377, 592, 621, 862
AflIII	ACRYGT	2 cut(s)	78, 319
AgsI	TTSAA	3 cut(s)	56, 121, 344
AhdI	GACNNNNNGTC	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	376
AloI	GAACNNNNNNTCC	2 cut(s)	939, 971
AluBI	AGCT	6 cut(s)	171, 279, 521, 635, 706, 721
AluI	AGCT	6 cut(s)	171, 279, 521, 635, 706, 721
Alw21I	GWGCWC	2 cut(s)	173, 778
Alw26I	GTCTC	1 cut(s)	842
AlwI	GGATC	3 cut(s)	827, 949, 959
AlwNI	CAGNNNCTG	1 cut(s)	836
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	17, 422
Asp718I	GGTACC	2 cut(s)	566, 744
AspS9I	GGNCC	3 cut(s)	293, 600, 800
AsuHPI	GGTGA	2 cut(s)	222, 365
AvaII	GGWCC	3 cut(s)	293, 600, 800
AxyI	CCTNAGG	1 cut(s)	192
BanI	GGYRCC	2 cut(s)	566, 744
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	2 cut(s)	771, 1153
Bbv12I	GWGCWC	2 cut(s)	173, 778
BbvI	GCAGC	2 cut(s)	4, 434
BccI	CCATC	2 cut(s)	7, 634
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	2 cut(s)	94, 523
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	2 cut(s)	350, 779
BfmI	CTRYAG	1 cut(s)	1110
BisI	GCNGC	3 cut(s)	18, 158, 423
BlsI	GCNGC	3 cut(s)	19, 159, 424
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	3 cut(s)	293, 600, 800
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmgT120I	GGNCC	3 cut(s)	293, 600, 800
BmiI	GGNNCC	5 cut(s)	568, 602, 746, 801, 1080
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	5 cut(s)	409, 529, 704, 965, 1048
BmuI	ACTGGG	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	987, 1019
BpuEI	CTTGAG	2 cut(s)	964, 989
BsaAI	YACGTR	1 cut(s)	514
BsaJI	CCNNGG	4 cut(s)	146, 406, 861, 1067
Bsc4I	CCNNNNNNNGG	4 cut(s)	377, 592, 621, 862
Bse1I	ACTGG	5 cut(s)	21, 222, 260, 993, 1146
Bse21I	CCTNAGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	146, 406, 861, 1067
BseGI	GGATG	3 cut(s)	97, 319, 910
BseLI	CCNNNNNNNGG	4 cut(s)	377, 592, 621, 862
BseMII	CTCAG	2 cut(s)	183, 828
BseNI	ACTGG	5 cut(s)	21, 222, 260, 993, 1146
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	4, 434
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	849
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	2 cut(s)	566, 744
BsiHKAI	GWGCWC	2 cut(s)	173, 778
BslFI	GGGAC	2 cut(s)	638, 813
BslI	CCNNNNNNNGG	4 cut(s)	377, 592, 621, 862
BsmAI	GTCTC	1 cut(s)	842
BsmFI	GGGAC	2 cut(s)	638, 813
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	173, 778
Bsp143I	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	184, 829
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	5 cut(s)	568, 602, 746, 801, 1080
BspMAI	CTGCAG	1 cut(s)	1114
BspPI	GGATC	3 cut(s)	827, 949, 959
BspT107I	GGYRCC	2 cut(s)	566, 744
BsrI	ACTGG	5 cut(s)	21, 222, 260, 993, 1146
BssECI	CCNNGG	4 cut(s)	146, 406, 861, 1067
BssMI	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
BssSI	CACGAG	2 cut(s)	771, 1153
BssT1I	CCWWGG	1 cut(s)	406
Bst2BI	CACGAG	2 cut(s)	771, 1153
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	7 cut(s)	116, 164, 234, 303, 629, 896, 1033
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	5 cut(s)	192, 449, 707, 824, 837
BstDSI	CCRYGG	1 cut(s)	406
BstENI	CCTNNNNNAGG	1 cut(s)	860
BstF5I	GGATG	3 cut(s)	97, 319, 910
BstKTI	GATC	6 cut(s)	97, 272, 526, 835, 957, 967
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	527, 581, 816, 1126
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	4 cut(s)	82, 323, 819, 855
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	1110
BstV1I	GCAGC	2 cut(s)	4, 434
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	97, 319, 910
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	267, 570
Cac8I	GCNNGC	1 cut(s)	817
CaiI	CAGNNNCTG	1 cut(s)	836
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	293, 600, 800
CseI	GACGC	1 cut(s)	998
Csp6I	GTAC	5 cut(s)	304, 414, 567, 745, 1139
CviQI	GTAC	5 cut(s)	304, 414, 567, 745, 1139
DdeI	CTNAG	5 cut(s)	192, 449, 707, 824, 837
DpnI	GATC	6 cut(s)	96, 271, 525, 834, 956, 966
DpnII	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
DriI	GACNNNNNGTC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	403
Eam1105I	GACNNNNNGTC	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	3 cut(s)	293, 600, 800
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	1151
Eco81I	CCTNAGG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	860
EcoO109I	RGGNCCY	2 cut(s)	600, 800
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	406
FaqI	GGGAC	2 cut(s)	638, 813
FbaI	TGATCA	2 cut(s)	94, 523
Fnu4HI	GCNGC	3 cut(s)	18, 158, 423
FokI	GGATG	3 cut(s)	104, 326, 917
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	18, 158, 423
FspBI	CTAG	2 cut(s)	350, 779
GluI	GCNGC	3 cut(s)	18, 158, 423
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	405
HgaI	GACGC	1 cut(s)	998
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	3 cut(s)	453, 467, 1092
HphI	GGTGA	2 cut(s)	222, 365
Hpy166II	GTNNAC	1 cut(s)	1139
Hpy188III	TCNNGA	8 cut(s)	98, 273, 551, 594, 836, 968, 981, 1155
Hpy8I	GTNNAC	1 cut(s)	1139
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	50, 591, 790, 1092, 1109, 1126
HpyCH4III	ACNGT	7 cut(s)	116, 164, 234, 303, 629, 896, 1033
HpyCH4IV	ACGT	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	527, 581, 816, 1126
HpyF3I	CTNAG	5 cut(s)	192, 449, 707, 824, 837
HpySE526I	ACGT	1 cut(s)	513
KpnI	GGTACC	2 cut(s)	570, 748
Ksp22I	TGATCA	2 cut(s)	94, 523
Kzo9I	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
LmnI	GCTCC	2 cut(s)	176, 1101
Lsp1109I	GCAGC	2 cut(s)	4, 434
LweI	GCATC	5 cut(s)	409, 529, 704, 965, 1048
MaeI	CTAG	2 cut(s)	350, 779
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	228, 890, 928
MalI	GATC	6 cut(s)	96, 271, 525, 834, 956, 966
MboI	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
MboII	GAAGA	2 cut(s)	22, 878
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	2 cut(s)	173, 778
MluCI	AATT	6 cut(s)	609, 688, 711, 758, 1024, 1123
MlyI	GAGTC	1 cut(s)	1101
MmeI	TCCRAC	4 cut(s)	65, 69, 183, 503
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	3 cut(s)	501, 1028, 1122
MslI	CAYNNNNRTG	3 cut(s)	324, 351, 1017
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	527, 581, 816, 1126
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
NlaIV	GGNNCC	5 cut(s)	568, 602, 746, 801, 1080
NmeAIII	GCCGAG	1 cut(s)	1115
NmuCI	GTSAC	3 cut(s)	228, 890, 928
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	4 cut(s)	82, 323, 819, 855
PaeI	GCATGC	1 cut(s)	819
PagI	TCATGA	1 cut(s)	97
PciI	ACATGT	2 cut(s)	78, 319
PfeI	GAWTC	2 cut(s)	453, 467
PkrI	GCNGC	3 cut(s)	19, 159, 424
PleI	GAGTC	1 cut(s)	1100
PpsI	GAGTC	1 cut(s)	1100
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	2 cut(s)	600, 800
PscI	ACATGT	2 cut(s)	78, 319
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	2 cut(s)	600, 800
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	5 cut(s)	568, 602, 746, 801, 1080
PspPI	GGNCC	3 cut(s)	293, 600, 800
PspPPI	RGGWCCY	2 cut(s)	600, 800
PstI	CTGCAG	1 cut(s)	1114
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	5 cut(s)	305, 415, 568, 746, 1140
RsaNI	GTAC	5 cut(s)	304, 414, 567, 745, 1139
RseI	CAYNNNNRTG	3 cut(s)	324, 351, 1017
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	501, 1028, 1122
SatI	GCNGC	3 cut(s)	18, 158, 423
Sau3AI	GATC	6 cut(s)	94, 269, 523, 832, 954, 964
Sau96I	GGNCC	3 cut(s)	293, 600, 800
SchI	GAGTC	1 cut(s)	1101
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	173, 778
SfaNI	GCATC	5 cut(s)	409, 529, 704, 965, 1048
SfcI	CTRYAG	1 cut(s)	1110
SinI	GGWCC	3 cut(s)	293, 600, 800
SmiMI	CAYNNNNRTG	3 cut(s)	324, 351, 1017
SmlI	CTYRAG	2 cut(s)	979, 1004
SmoI	CTYRAG	2 cut(s)	979, 1004
SphI	GCATGC	1 cut(s)	819
Sse9I	AATT	6 cut(s)	609, 688, 711, 758, 1024, 1123
SsiI	CCGC	1 cut(s)	157
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	2 cut(s)	350, 779
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	7 cut(s)	116, 164, 234, 303, 629, 896, 1033
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	236, 330, 631
TaqII	GACCGA	2 cut(s)	310, 875
TasI	AATT	6 cut(s)	609, 688, 711, 758, 1024, 1123
TatI	WGTACW	2 cut(s)	303, 1138
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	453, 467
Tru1I	TTAA	3 cut(s)	501, 1028, 1122
Tru9I	TTAA	3 cut(s)	501, 1028, 1122
TscAI	CASTG	2 cut(s)	267, 577
TseFI	GTSAC	3 cut(s)	228, 890, 928
TseI	GCWGC	2 cut(s)	17, 422
Tsp45I	GTSAC	3 cut(s)	228, 890, 928
TspDTI	ATGAA	4 cut(s)	255, 330, 445, 809
TspRI	CASTG	2 cut(s)	267, 577
VpaK11BI	GGWCC	3 cut(s)	293, 600, 800
XagI	CCTNNNNNAGG	1 cut(s)	860
XceI	RCATGY	4 cut(s)	82, 323, 819, 855
XspI	CTAG	2 cut(s)	350, 779
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.