Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Forward (+)

19300137 .. 19302078

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACTCTGGGCTTTGAATGTTGTTTTCTGGTGTTGAAATTTTATCGCGGTGAGTTCGAACAAGGCAAAAGTGTGTTGTTTACTTTGAGTTGCAGGCGCATCGAAAGCAAGGCTCCTGTCTTTGACTCCAGGTGCTATAAGGAAGACACGCATAGACTATTGCTGACATCGAGAGTACAGAACAACGACAACAGCTGCAGTGTCATAAATTGTCGAAAGTTCCAGAGCCTTGATTCCGAAGGTCTGGATGGTGATCCACAAAGGGCCCTCTGTCAGTTCCGGTTTATTAAACTGCTGAAACTTGAGGATGATATCGGCACCCTAAGGCTCGCCGTTTCAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

115

Amino Acids

13.3

Weight (kDa)

8.51

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	1 cut(s)	48
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	177
AgsI	TTSAA	3 cut(s)	17, 37, 339
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	264
ApaI	GGGCCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	264, 265
AsuHPI	GGTGA	2 cut(s)	62, 263
AsuII	TTCGAA	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	264, 265
BmiI	GGNNCC	3 cut(s)	114, 266, 319
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	112
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	279
Bse21I	CCTNAGG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	253, 313
BseJI	GATNNNNATC	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	280
BsnI	GGCC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	114, 266, 319
BspMAI	CTGCAG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	317
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	95, 330
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	253, 313
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	253, 313
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	95, 330
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	264, 265
Csp6I	GTAC	1 cut(s)	176
CviJI	RGCY	6 cut(s)	12, 113, 195, 228, 266, 328
CviKI_1	RGCY	6 cut(s)	12, 113, 195, 228, 266, 328
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	313
Eco81I	CCTNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	264, 265
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	268
FaiI	YATR	3 cut(s)	138, 153, 206
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	260, 320
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	4, 125, 233
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	62, 263
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	238, 347
Hpy188III	TCNNGA	3 cut(s)	171, 223, 245
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	93, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	14, 79, 115, 129, 142, 230, 236, 293
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	108
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	38, 208
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	278, 298
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	253
NlaIV	GGNNCC	3 cut(s)	114, 266, 319
NspV	TTCGAA	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	114, 266, 319
PspOMI	GGGCCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	264, 265
PstI	CTGCAG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	264, 265
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	134, 197, 244
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	38, 208
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	4 cut(s)	57, 102, 170, 214
TasI	AATT	2 cut(s)	38, 208
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	195
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.