Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Reverse (-)

19264594 .. 19269041

Gene Structure 4448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCAGGGTCAAGTGGTACGTCCATAAGCAAGACCGTAGCTCCTGCACGAACTACTGCAGCTACATCAACAACGTTGAATTCACAAAATCATGTTATACCCAAGACTCTGCATCCCAGTACAAGCATGCCAGCAACGAGGAGTCAGACCAATAATATTGTAAGATCAAAACCTGTGCAAGATTCTGGTGCAGGTTATGATGAAAAATTGGTTGAAATGATAAATAGTGCCATAGTGGATAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCTGGTCTTGAGAAGGTGAAGAAAACTTTGATGGAGATGGTTATTTTACCGACTAAGAGAAGAGATTTGTTCACTGGCCTTCCAAGGCCAGCTCGAGGTCTGCTTCTGTTTGGTCCACCTGGTAATGGGAAAACCATGCTTGCTAAGGCAGTTGCTTCAGAATCAGAGGCAACCTTTTTCAATGTATCTGCATCTTCACTGACATCAAAATGGGTGGGAGAGGCTGAAAAGCTTGTGCGGACACTTTTCATGGTTGCTATATCCAGACAGCCATCTGTAATTTTCATGGATGAGATTGATAGTATCATGTCAACAAGGCAGGCAAATGAAAATGATGCAAGCAGAAGGTTGAAGTCAGAGTTTCTAATTCAGTTTGATGGAGTGACATCTAATCCTAATGATCTAGTAATTGTGATTGACGACGCAGTTCTTAGGAGATTGGTGAAGAGAGTATACATACCTTTACCAGATCTACCTGCTAGGAGACTTCTCCTAAGTCACAAACTCAAAGGCCAAGCATTTTCCTTACCAAGTGGAGATCTTGAACGACTTGCAAGAGACACTGAAGGTTATTCAGGAAGTGATCTACAAGCATTGTGTGAAGAAGCAGCAATGATGCCAATTAGGGAACTTGGTGAAAACATTCTCACCATCAAGGCAAATCAGGTAAGACCACTAATAATTGAAGATTTTCAGAAGGCAATGACTAATCAGGCCAAGTTTAAGCAAAAGCAAGTGGATTATGAATTTATGAAAGATGATCCGTGCTTCGGTGCTAACCCTGTACCTCTCGAGTTTCTGGAGAAGCAAAACCCGAGTAAATTTGTGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

368

Amino Acids

40.6

Weight (kDa)

8.69

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	87 - 193	9.3e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	124 - 228	5.7e-31	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	270 - 304	6e-14	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	182, 754
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	508
AclI	AACGTT	1 cut(s)	74
AclWI	GGATC	1 cut(s)	1025
AcsI	RAATTY	3 cut(s)	79, 1016, 1091
AcuI	CTGAAG	2 cut(s)	411, 855
AfaI	GTAC	3 cut(s)	19, 121, 1056
AfiI	CCNNNNNNNGG	3 cut(s)	365, 395, 1040
AgsI	TTSAA	6 cut(s)	79, 215, 451, 622, 815, 956
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	4 cut(s)	41, 62, 362, 502
AluI	AGCT	4 cut(s)	41, 62, 362, 502
Alw26I	GTCTC	2 cut(s)	748, 822
AlwI	GGATC	1 cut(s)	1025
Ama87I	CYCGRG	3 cut(s)	363, 1061, 1084
AoxI	GGCC	4 cut(s)	346, 356, 781, 984
ApeKI	GCWGC	2 cut(s)	59, 878
ApoI	RAATTY	3 cut(s)	79, 1016, 1091
Asp700I	GAANNNNTTC	3 cut(s)	247, 912, 960
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	298, 724, 910, 917
AvaI	CYCGRG	3 cut(s)	363, 1061, 1084
AvaII	GGWCC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbvI	GCAGC	2 cut(s)	71, 890
BccI	CCATC	5 cut(s)	295, 301, 550, 641, 929
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	748, 822
BfaI	CTAG	2 cut(s)	674, 750
BfmI	CTRYAG	1 cut(s)	57
BfuAI	ACCTGC	2 cut(s)	182, 754
BglII	AGATCT	2 cut(s)	739, 808
BisI	GCNGC	2 cut(s)	60, 879
BlsI	GCNGC	2 cut(s)	61, 880
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	3 cut(s)	363, 1061, 1084
BmgT120I	GGNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	4 cut(s)	121, 470, 595, 876
BmuI	ACTGGG	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	1091
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 395, 1040
Bse1I	ACTGG	2 cut(s)	117, 349
Bse3DI	GCAATG	2 cut(s)	888, 978
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	3 cut(s)	112, 565, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	365, 395, 1040
BseMI	GCAATG	2 cut(s)	888, 978
BseNI	ACTGG	2 cut(s)	117, 349
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	71, 890
BsgI	GTGCAG	2 cut(s)	30, 210
BshFI	GGCC	4 cut(s)	348, 358, 783, 986
BsiHKCI	CYCGRG	3 cut(s)	363, 1061, 1084
BslI	CCNNNNNNNGG	3 cut(s)	365, 395, 1040
BsmAI	GTCTC	2 cut(s)	748, 822
BsnI	GGCC	4 cut(s)	348, 358, 783, 986
BsoBI	CYCGRG	3 cut(s)	363, 1061, 1084
Bsp143I	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	4 cut(s)	348, 358, 783, 986
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	2 cut(s)	182, 754
BspPI	GGATC	1 cut(s)	1025
BsrDI	GCAATG	2 cut(s)	888, 978
BsrI	ACTGG	2 cut(s)	117, 349
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
BssNAI	GTATAC	1 cut(s)	724
BssT1I	CCWWGG	1 cut(s)	353
Bst1107I	GTATAC	1 cut(s)	724
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	325, 710
BstC8I	GCNNGC	6 cut(s)	128, 132, 360, 411, 591, 610
BstDEI	CTNAG	4 cut(s)	324, 414, 701, 764
BstF5I	GGATG	3 cut(s)	112, 565, 1105
BstKTI	GATC	6 cut(s)	167, 673, 742, 811, 856, 1033
BstMAI	GTCTC	2 cut(s)	748, 822
BstMBI	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	71, 890
BstX2I	RGATCY	2 cut(s)	739, 808
BstYI	RGATCY	2 cut(s)	739, 808
BstZ17I	GTATAC	1 cut(s)	724
BsuRI	GGCC	4 cut(s)	348, 358, 783, 986
BtsCI	GGATG	3 cut(s)	112, 565, 1105
BtsIMutI	CAGTG	3 cut(s)	342, 467, 831
BveI	ACCTGC	2 cut(s)	182, 754
Cac8I	GCNNGC	6 cut(s)	128, 132, 360, 411, 591, 610
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	701
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	18, 120, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	6 cut(s)	92, 127, 406, 520, 556, 577
CviQI	GTAC	3 cut(s)	18, 120, 1055
DdeI	CTNAG	4 cut(s)	324, 414, 701, 764
DpnI	GATC	6 cut(s)	166, 672, 741, 810, 855, 1032
DpnII	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
Eam1104I	CTCTTC	2 cut(s)	325, 710
EarI	CTCTTC	2 cut(s)	325, 710
Eco130I	CCWWGG	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	411, 855
Eco88I	CYCGRG	3 cut(s)	363, 1061, 1084
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	6 cut(s)	95, 130, 409, 523, 559, 580
FatI	CATG	6 cut(s)	91, 126, 405, 519, 555, 576
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	60, 879
FokI	GGATG	2 cut(s)	99, 572
Fsp4HI	GCNGC	2 cut(s)	60, 879
FspBI	CTAG	2 cut(s)	674, 750
GluI	GCNGC	2 cut(s)	60, 879
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	4 cut(s)	348, 358, 783, 986
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	6 cut(s)	95, 130, 409, 523, 559, 580
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	4 cut(s)	106, 142, 182, 431
HphI	GGTGA	4 cut(s)	298, 724, 910, 917
Hpy166II	GTNNAC	4 cut(s)	342, 386, 582, 724
Hpy188I	TCNGA	5 cut(s)	147, 430, 436, 628, 966
Hpy188III	TCNNGA	6 cut(s)	278, 534, 812, 846, 1061, 1070
Hpy8I	GTNNAC	4 cut(s)	342, 386, 582, 724
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	6 cut(s)	258, 277, 359, 609, 830, 961
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	20, 74
HpyCH4V	TGCA	8 cut(s)	47, 59, 112, 178, 191, 461, 608, 824
HpyF3I	CTNAG	4 cut(s)	324, 414, 701, 764
HpySE526I	ACGT	2 cut(s)	20, 74
Hsp92II	CATG	6 cut(s)	95, 130, 409, 523, 559, 580
Kzo9I	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	71, 890
LweI	GCATC	4 cut(s)	121, 470, 595, 876
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	2 cut(s)	674, 750
MaeII	ACGT	2 cut(s)	20, 74
MaeIII	GTNAC	2 cut(s)	652, 767
MalI	GATC	6 cut(s)	166, 672, 741, 810, 855, 1032
MboI	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
MboII	GAAGA	7 cut(s)	275, 301, 342, 456, 727, 884, 968
MflI	RGATCY	2 cut(s)	739, 808
MluCI	AATT	9 cut(s)	79, 206, 549, 636, 678, 891, 951, 1016, 1091
MlyI	GAGTC	2 cut(s)	100, 151
MnlI	CCTC	5 cut(s)	132, 359, 430, 484, 1068
MroXI	GAANNNNTTC	3 cut(s)	247, 912, 960
MseI	TTAA	2 cut(s)	255, 993
MslI	CAYNNNNRTG	1 cut(s)	478
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
NdeII	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
NlaIII	CATG	6 cut(s)	95, 130, 409, 523, 559, 580
NmuCI	GTSAC	2 cut(s)	652, 767
NspI	RCATGY	1 cut(s)	130
PaeI	GCATGC	1 cut(s)	130
PaeR7I	CTCGAG	2 cut(s)	363, 1061
PdmI	GAANNNNTTC	3 cut(s)	247, 912, 960
PfeI	GAWTC	2 cut(s)	182, 431
PkrI	GCNGC	2 cut(s)	61, 880
PleI	GAGTC	2 cut(s)	100, 150
PpsI	GAGTC	2 cut(s)	100, 150
Psp1406I	AACGTT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	383
PspXI	VCTCGAGB	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	739, 808
RsaI	GTAC	3 cut(s)	19, 121, 1056
RsaNI	GTAC	3 cut(s)	18, 120, 1055
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	255, 993
SatI	GCNGC	2 cut(s)	60, 879
Sau3AI	GATC	6 cut(s)	164, 670, 739, 808, 853, 1030
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	100, 151
ScrFI	CCNGG	1 cut(s)	390
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	4 cut(s)	121, 470, 595, 876
SfcI	CTRYAG	1 cut(s)	57
Sfr274I	CTCGAG	2 cut(s)	363, 1061
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	2 cut(s)	363, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	3 cut(s)	278, 363, 1061
SmoI	CTYRAG	3 cut(s)	278, 363, 1061
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	9 cut(s)	79, 206, 549, 636, 678, 891, 951, 1016, 1091
SsiI	CCGC	1 cut(s)	508
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	2 cut(s)	674, 750
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	2 cut(s)	23, 77
TaqI	TCGA	2 cut(s)	364, 1062
TasI	AATT	9 cut(s)	79, 206, 549, 636, 678, 891, 951, 1016, 1091
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	182, 431
Tru1I	TTAA	2 cut(s)	255, 993
Tru9I	TTAA	2 cut(s)	255, 993
TscAI	CASTG	3 cut(s)	349, 474, 838
TseFI	GTSAC	2 cut(s)	652, 767
TseI	GCWGC	2 cut(s)	59, 878
Tsp45I	GTSAC	2 cut(s)	652, 767
TspDTI	ATGAA	6 cut(s)	216, 508, 544, 612, 1029, 1037
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	3 cut(s)	349, 474, 838
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	3 cut(s)	79, 1016, 1091
XceI	RCATGY	1 cut(s)	130
XhoI	CTCGAG	2 cut(s)	363, 1061
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	3 cut(s)	247, 912, 960
XspI	CTAG	2 cut(s)	674, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.