RLG00000013017

protein phosphatase 2C 27

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002573
Physical Location & Seq
Forward (+)
24900907 .. 24902982
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013017

Sequence Viewer

Length: 1158 bp
ATGGCTGCAGGGACAGATACCCCATCTTCACTTTCCATGTTAGATGGCAGTTACAGAAAGAATGTAACTGTTACAAGGGACGAGAAATCAAATACTTTTGAGAACATGAAGCAATCCAACATCGGCAAACCTCCTAGGCATCTTTCAGCTGTTAGGAACTGTGTCAGCTCTGCCCAGTTGGCTCCTGCAACTGAAGTGGAGTTCGATAGTGGGATTGTTAGCTCAAAATCCTCGTCAGATAGTAATTCACCATTTGTACCTGTTTTTCGGTCCGGAAGCTGTTCAGAGATTGGACCGAAACAATTTATGGAGGATGAGCATATCTGTATAGACAATATTCTTGAACATCTAGGATCTACTGCTGACTTTCCTTCTCCTGGAGCTTTCTATGGGGTTTTTGATGGCCATGGTGGTACAGATGCAGCTTCTTATATCAGAGAGAATATTTTGAGGTTTATAGTGGAGGATTCACATTTCCCTTTTTGTGCTAAGCAAGCTATTAAGAGTGCTTTTCTAAAGGCTGACCATGCTTTTGCTGATAATGGTACTCTTGATAGTTCCTCTGGTACTACTGCACTTACTGCCCTTATCTCTGGAAGGACGATGCTAGTTGCCAATGCTGGAGATTGTCGAGCTGTTCTGGGAAGAAGAGGCAGGGCAGTGGAACTTTCCAAAGACCATAAACCAAATTGTGCTTCAGAAAGAGTAAGAATTGAAGAACTGGGAGGCGTGGTGTATGATGGATACCTCAACGGCCAATTGTCAGTGGCACGAGCACTTGGAGATTGGCACATGAAAGGGTCCAAAGGTTCCTCTTGTCCCTTAAGTGCAGAACCGGAGCTTGAGGAGACAATTCTGAGTGAGGAAGATGAGTTCTTGATCATAGGTTGTGACGGGCTGTGGGATGTGATGAGCAGCCAGTGTGCCGTCACAATTGCAAGGAAAGAATTGATGCTTCACAATGATCCCGAAAGATGCTCCAGAGAGCTAGTCAGGGAAGCTCTCAAGCGCGATACATGTGATAACTTGACCGTCGTAGTGGTATGCTTCTCCCCAGAACCACCGCCTCAGCTTGAGATCCCAAAGTTCAAGTTCAAGAGGAGTATATCAGCAGAAAGTCTGAATCTTCTGCAGGAGGTACTAGATAGTAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

386

Amino Acids

41.79

Weight (kDa)

5.12

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 92 - 342 8.6e-75 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1011
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 1 cut(s) 1064
AclWI GGATC 3 cut(s) 361, 959, 1072
AcoI YGGCCR 2 cut(s) 403, 754
AcuI CTGAAG 2 cut(s) 213, 681
AfaI GTAC 5 cut(s) 258, 415, 547, 568, 1140
AfiI CCNNNNNNNGG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 4 cut(s) 344, 716, 1090, 1096
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AloI GAACNNNNNNTCC 2 cut(s) 857, 889
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 3 cut(s) 361, 959, 1072
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 2 cut(s) 403, 754
ApeKI GCWGC 3 cut(s) 5, 422, 915
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 515, 547
Asp700I GAANNNNTTC 1 cut(s) 280
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 1 cut(s) 1011
AspS9I GGNCC 3 cut(s) 270, 293, 801
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 3 cut(s) 270, 293, 801
AvrII CCTAGG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 405
BauI CACGAG 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 434, 927
BccI CCATC 4 cut(s) 31, 38, 395, 734
BceAI ACGGC 2 cut(s) 769, 911
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 1 cut(s) 737
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 842
BfaI CTAG 5 cut(s) 135, 350, 608, 989, 1142
BfmI CTRYAG 2 cut(s) 6, 1130
BfrI CTTAAG 1 cut(s) 823
BfuI GTATCC 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 6, 423, 916
BlnI CCTAGG 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 3 cut(s) 7, 424, 917
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 3 cut(s) 270, 293, 801
BmgT120I GGNCC 3 cut(s) 270, 293, 801
BmiI GGNNCC 3 cut(s) 183, 802, 811
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 2 cut(s) 169, 731
BmsI GCATC 5 cut(s) 148, 409, 594, 942, 965
BmuI ACTGGG 2 cut(s) 169, 731
BpmI CTGGAG 3 cut(s) 399, 642, 964
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 3 cut(s) 863, 989, 1094
BsaJI CCNNGG 2 cut(s) 134, 406
BsaWI WCCGGW 2 cut(s) 272, 835
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 3 cut(s) 175, 726, 919
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 134, 406
BseGI GGATG 2 cut(s) 319, 910
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 848, 1082
BseNI ACTGG 3 cut(s) 175, 726, 919
BseRI GAGGAG 2 cut(s) 860, 1114
BseXI GCAGC 2 cut(s) 434, 927
BsgI GTGCAG 2 cut(s) 558, 849
Bsh1236I CGCG 1 cut(s) 1011
BshFI GGCC 2 cut(s) 405, 756
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 2 cut(s) 273, 836
BslFI GGGAC 3 cut(s) 25, 92, 804
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 842
BsmFI GGGAC 3 cut(s) 25, 92, 804
BsnI GGCC 2 cut(s) 405, 756
Bsp1286I GDGCHC 1 cut(s) 778
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 4 cut(s) 353, 879, 964, 1077
Bsp1720I GCTNAGC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 1 cut(s) 1064
BspANI GGCC 2 cut(s) 405, 756
BspCNI CTCAG 2 cut(s) 849, 1081
BspEI TCCGGA 1 cut(s) 272
BspFNI CGCG 1 cut(s) 1011
BspLI GGNNCC 3 cut(s) 183, 802, 811
BspMAI CTGCAG 2 cut(s) 10, 1134
BspPI GGATC 3 cut(s) 361, 959, 1072
BspTI CTTAAG 1 cut(s) 823
BsrI ACTGG 3 cut(s) 175, 726, 919
BssECI CCNNGG 2 cut(s) 134, 406
BssMI GATC 4 cut(s) 353, 879, 964, 1077
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 134, 406
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 70, 161, 1033
Bst6I CTCTTC 1 cut(s) 643
BstAFI CTTAAG 1 cut(s) 823
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 489, 857, 1068
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 319, 910
BstFNI CGCG 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1011
BstKTI GATC 4 cut(s) 356, 882, 967, 1080
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 4 cut(s) 353, 879, 964, 1077
BstMWI GCNNNNNNNGC 4 cut(s) 179, 494, 527, 581
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 1020
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 2 cut(s) 6, 1130
BstUI CGCG 1 cut(s) 1011
BstV1I GCAGC 2 cut(s) 434, 927
BstX2I RGATCY 2 cut(s) 353, 1077
BstYI RGATCY 2 cut(s) 353, 1077
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 2 cut(s) 405, 756
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 319, 910
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 3 cut(s) 666, 771, 926
Cac8I GCNNGC 1 cut(s) 495
CfoI GCGC 1 cut(s) 1011
Cfr13I GGNCC 3 cut(s) 270, 293, 801
CpoI CGGWCCG 1 cut(s) 270
Csp6I GTAC 5 cut(s) 257, 414, 546, 567, 1139
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CspI CGGWCCG 1 cut(s) 270
CviAII CATG 6 cut(s) 37, 106, 407, 527, 793, 1017
CviQI GTAC 5 cut(s) 257, 414, 546, 567, 1139
DdeI CTNAG 3 cut(s) 489, 857, 1068
DpnI GATC 4 cut(s) 355, 881, 966, 1079
DpnII GATC 4 cut(s) 353, 879, 964, 1077
EaeI YGGCCR 2 cut(s) 403, 754
Eam1104I CTCTTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 134, 406
Eco47I GGWCC 3 cut(s) 270, 293, 801
Eco57I CTGAAG 2 cut(s) 213, 681
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 134, 406
ErhI CCWWGG 2 cut(s) 134, 406
FaeI CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
FaqI GGGAC 3 cut(s) 25, 92, 804
FatI CATG 6 cut(s) 36, 105, 406, 526, 792, 1016
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 6, 423, 916
FokI GGATG 2 cut(s) 326, 917
Fsp4HI GCNGC 3 cut(s) 6, 423, 916
FspBI CTAG 5 cut(s) 135, 350, 608, 989, 1142
GlaI GCGC 1 cut(s) 1010
GluI GCNGC 3 cut(s) 6, 423, 916
GsuI CTGGAG 3 cut(s) 399, 642, 964
HaeIII GGCC 2 cut(s) 405, 756
HapII CCGG 2 cut(s) 273, 836
HhaI GCGC 1 cut(s) 1011
Hin1II CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
Hin6I GCGC 1 cut(s) 1009
HinP1I GCGC 1 cut(s) 1009
HinfI GANTC 2 cut(s) 467, 1123
HpaII CCGG 2 cut(s) 273, 836
HphI GGTGA 1 cut(s) 240
Hpy188I TCNGA 6 cut(s) 238, 286, 437, 700, 858, 1122
Hpy188III TCNNGA 8 cut(s) 273, 341, 551, 594, 877, 968, 981, 1096
Hpy99I CGWCG 1 cut(s) 1037
HpyAV CCTTC 2 cut(s) 381, 591
HpyCH4III ACNGT 3 cut(s) 70, 161, 1033
HpyCH4V TGCA 7 cut(s) 8, 188, 422, 575, 830, 938, 1132
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 494, 527, 581
HpyF3I CTNAG 3 cut(s) 489, 857, 1068
Hsp92II CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
HspAI GCGC 1 cut(s) 1009
Kpn2I TCCGGA 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 4 cut(s) 353, 879, 964, 1077
LmnI GCTCC 4 cut(s) 187, 380, 838, 983
Lsp1109I GCAGC 2 cut(s) 434, 927
LweI GCATC 5 cut(s) 148, 409, 594, 942, 965
MaeI CTAG 5 cut(s) 135, 350, 608, 989, 1142
MaeIII GTNAC 5 cut(s) 50, 64, 70, 890, 928
MalI GATC 4 cut(s) 355, 881, 966, 1079
MboI GATC 4 cut(s) 353, 879, 964, 1077
MboII GAAGA 6 cut(s) 18, 657, 660, 728, 878, 1118
MfeI CAATTG 2 cut(s) 758, 933
MflI RGATCY 2 cut(s) 353, 1077
MhlI GDGCHC 1 cut(s) 778
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 8 cut(s) 244, 302, 688, 711, 758, 852, 933, 947
MluNI TGGCCA 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 405
MroI TCCGGA 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 280
MscI TGGCCA 1 cut(s) 405
MseI TTAA 2 cut(s) 501, 824
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 149
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 2 cut(s) 273, 836
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 2 cut(s) 758, 933
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 1011
MwoI GCNNNNNNNGC 4 cut(s) 179, 494, 527, 581
NcoI CCATGG 1 cut(s) 406
NdeII GATC 4 cut(s) 353, 879, 964, 1077
NlaIII CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
NlaIV GGNNCC 3 cut(s) 183, 802, 811
NmuCI GTSAC 2 cut(s) 890, 928
NspI RCATGY 1 cut(s) 1020
PciI ACATGT 1 cut(s) 1016
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 467, 1123
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 7, 424, 917
PscI ACATGT 1 cut(s) 1016
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 183, 802, 811
PspPI GGNCC 3 cut(s) 270, 293, 801
PstI CTGCAG 2 cut(s) 10, 1134
PsuI RGATCY 2 cut(s) 353, 1077
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 5 cut(s) 258, 415, 547, 568, 1140
RsaNI GTAC 5 cut(s) 257, 414, 546, 567, 1139
Rsr2I CGGWCCG 1 cut(s) 270
RsrII CGGWCCG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 501, 824
SatI GCNGC 3 cut(s) 6, 423, 916
Sau3AI GATC 4 cut(s) 353, 879, 964, 1077
Sau96I GGNCC 3 cut(s) 270, 293, 801
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 5 cut(s) 148, 409, 594, 942, 965
SfcI CTRYAG 2 cut(s) 6, 1130
SinI GGWCC 3 cut(s) 270, 293, 801
SmlI CTYRAG 4 cut(s) 823, 842, 1004, 1073
SmoI CTYRAG 4 cut(s) 823, 842, 1004, 1073
Sse9I AATT 8 cut(s) 244, 302, 688, 711, 758, 852, 933, 947
SsiI CCGC 1 cut(s) 1064
SspI AATATT 2 cut(s) 337, 445
SspMI CTAG 5 cut(s) 135, 350, 608, 989, 1142
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 2 cut(s) 134, 406
TaaI ACNGT 3 cut(s) 70, 161, 1033
TaqI TCGA 2 cut(s) 204, 631
TaqII GACCGA 2 cut(s) 258, 310
TasI AATT 8 cut(s) 244, 302, 688, 711, 758, 852, 933, 947
TfiI GAWTC 2 cut(s) 467, 1123
Tru1I TTAA 2 cut(s) 501, 824
Tru9I TTAA 2 cut(s) 501, 824
TscAI CASTG 3 cut(s) 666, 771, 926
TseFI GTSAC 2 cut(s) 890, 928
TseI GCWGC 3 cut(s) 5, 422, 915
Tsp45I GTSAC 2 cut(s) 890, 928
TspDTI ATGAA 2 cut(s) 122, 809
TspRI CASTG 3 cut(s) 666, 771, 926
Vha464I CTTAAG 1 cut(s) 823
VpaK11BI GGWCC 3 cut(s) 270, 293, 801
XceI RCATGY 1 cut(s) 1020
XmaJI CCTAGG 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 280
XspI CTAG 5 cut(s) 135, 350, 608, 989, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.