Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368733.1

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 733

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368733.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

gaccctgatcattgctaatgctggagactgtcgagctgtaatggggaaacggggtagagcaatagagatgtcaaacgaccacaaaccaaattgtgcatcagaaaggcttagaattgagaaacttggtggtgtgatatatgacgggtacctcaatggacaattatctgtggctcgtgctctaggagactggcacatgaagggaccgaaaggctctgcctgccctctaagtgcagagcctgagttgaaggagacatgcctgactgaggaagatgagtttttaataatggggtgtgatggtttgtgggatgtaatgagtagccaatgtgctgtaacgatggcgaggaaagaactgatgatccataatgatcctgaaagatgctcaagagaactggtcagagaggcactcaagcggcacacatgtgataatctaactgttatcgtggtttgtttttccccagatgcaccccctcggatagaaatacctcaaagccgagtccggaggagcatttctgcagaagggcttaatttgttgaagggtgtactggactgcaacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061392 GO:0061416 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097305 GO:0104004 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

185

Amino Acids

20.41

Weight (kDa)

6.09

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	2 cut(s)	350, 360
AfaI	GTAC	2 cut(s)	147, 541
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	245, 533
AleI	CACNNNNGTG	1 cut(s)	418
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	19, 178, 243
AlwI	GGATC	2 cut(s)	350, 360
AlwNI	CAGNNNCTG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	496
Asp718I	GGTACC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	2 cut(s)	288, 329
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	3 cut(s)	19, 178, 243
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	511
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	147, 202
BmsI	GCATC	3 cut(s)	105, 366, 449
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	365, 390
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	192, 394, 547
Bse3DI	GCAATG	1 cut(s)	10
BseAI	TCCGGA	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	229, 253
BseNI	ACTGG	3 cut(s)	192, 394, 547
BseRI	GAGGAG	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	3 cut(s)	19, 178, 243
BsmFI	GGGAC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	7, 355, 365
BspACI	CCGC	1 cut(s)	410
BspCNI	CTCAG	2 cut(s)	230, 254
BspEI	TCCGGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	147, 202
BspMAI	CTGCAG	1 cut(s)	515
BspPI	GGATC	2 cut(s)	350, 360
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	10
BsrI	ACTGG	3 cut(s)	192, 394, 547
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	7, 355, 365
BssSI	CACGAG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	30, 434
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	108, 225, 238, 262
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	3 cut(s)	10, 358, 368
BstMAI	GTCTC	3 cut(s)	19, 178, 243
BstMBI	GATC	3 cut(s)	7, 355, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	256, 421
BstSFI	CTRYAG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	218
CaiI	CAGNNNCTG	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	146, 540
CviAII	CATG	4 cut(s)	194, 253, 418, 556
CviJI	RGCY	8 cut(s)	36, 107, 171, 211, 236, 319, 490, 521
CviKI_1	RGCY	8 cut(s)	36, 107, 171, 211, 236, 319, 490, 521
CviQI	GTAC	2 cut(s)	146, 540
DdeI	CTNAG	4 cut(s)	108, 225, 238, 262
DpnI	GATC	3 cut(s)	9, 357, 367
DpnII	GATC	3 cut(s)	7, 355, 365
Eco47I	GGWCC	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	197, 256, 421, 559
FaiI	YATR	7 cut(s)	137, 139, 195, 254, 361, 419, 557
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	193, 252, 417, 555
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	43
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	4 cut(s)	197, 256, 421, 559
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	3 cut(s)	101, 396, 472
Hpy188III	TCNNGA	3 cut(s)	369, 382, 497
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	4 cut(s)	191, 239, 510, 527
HpyCH4III	ACNGT	2 cut(s)	30, 434
HpyCH4V	TGCA	5 cut(s)	96, 231, 462, 513, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	108, 225, 238, 262
Hsp92II	CATG	4 cut(s)	197, 256, 421, 559
Kpn2I	TCCGGA	1 cut(s)	496
KpnI	GGTACC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 355, 365
LmnI	GCTCC	1 cut(s)	502
LweI	GCATC	3 cut(s)	105, 366, 449
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	9, 357, 367
MboI	GATC	3 cut(s)	7, 355, 365
MboII	GAAGA	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	4 cut(s)	89, 112, 159, 524
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	159, 232, 257, 334, 392, 478, 493, 493
MroI	TCCGGA	1 cut(s)	496
MseI	TTAA	2 cut(s)	279, 523
MslI	CAYNNNNRTG	1 cut(s)	418
MspI	CCGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	3 cut(s)	7, 355, 365
NlaIII	CATG	4 cut(s)	197, 256, 421, 559
NlaIV	GGNNCC	2 cut(s)	147, 202
NmeAIII	GCCGAG	1 cut(s)	516
NspI	RCATGY	2 cut(s)	256, 421
OliI	CACNNNNGTG	1 cut(s)	418
PciI	ACATGT	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	147, 202
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	147, 541
RsaNI	GTAC	2 cut(s)	146, 540
RseI	CAYNNNNRTG	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	279, 523
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	7, 355, 365
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	3 cut(s)	38, 151, 485
SfaNI	GCATC	3 cut(s)	105, 366, 449
SfcI	CTRYAG	1 cut(s)	511
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	380, 405
SmoI	CTYRAG	2 cut(s)	380, 405
Sse9I	AATT	4 cut(s)	89, 112, 159, 524
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	30, 434
TaqI	TCGA	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	4 cut(s)	89, 112, 159, 524
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	279, 523
Tru9I	TTAA	2 cut(s)	279, 523
TspDTI	ATGAA	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	261
XceI	RCATGY	2 cut(s)	256, 421
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.