Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Reverse (-)

16993607 .. 16995219

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCGAAAAGGAGTGTTTGAAAGGGTATACTTGAGGTCCAGTTATTTATCCGGTGGTGGATTATGTTTTGGGGAGAAAATGGCTGCAGGGACTGATTACCCGCAGGCACTTTCCATGTTGGATGGCAGTTATAGAAAGGAGAACGTTACTGTTACAAGAGACGGGAAATCAAGTACTTTTGAGAACTTGAAGCAACCGAACATTGGCAGACCTCCTCGTCACCTCTCAGCTATTAGGTGTTGCGTAAGCTCTGCCCAGTTGGCTCCTGCAGCTGAAGTGGAGTTGGATGTTGGGATTGTTAGCTCAAAGTCTCCATCAGATAGTAACTCAGCTTTTGTACCCGTTTTTCACTCTGGAAGCTGCTCGGAGATTGGACCGAAGCCATATATGGAGGATGGGCATGTTTGTATAGACAATATTCTTGATCATCTAGGTGCAACTGCGAACTTCACTTCTCCTGGAGCATTCTATGTGATTTTTTCTTCTTTTTTTTTTTGGGTTGTTGGAAACAAATTTTTGAACAATTCTATCTTATTATGCGAAGTCCACAGGACGATGCTAATTGCAAATGCTGGAGATTGCCGAGCTGTGCTGGGAAGAAGAGGTCGGGCAATTGAGCTTTCCAAAGACCATAAACCCAATTGTGCCTCCGAAAGAGTGAGAATCGAGAAACTGGGAGGCATGGTGTATGATGGCTACCTCAACGGTCAATTATCTGTGGCACGAGCTCTTGGGGACTGGCACATGAAAGGCTCCAAAGGTTCCTTGTGTCCCTTGAGTGCAGAGCCAGAGCTCGAGGAGACAATTCTGAGGGAGGAAGACGAATTCTTAATCCTAGGCTGTGATGGGTTGTGGGATGTGATGAGCAGCCAGTGTGCAGTTACGATGGTAAGGAAAGAACTAATGATCCACAATGATCCCGAGAGATGCTCAAGAGAGCTGGTTCGGGAGGCACTCAAGCGCAATACGTGTGATAACCTGACGGTTGTTGTGGTATGCTTCTCGGCAGATCCACCCCCGTTGCTTGAGATACCAAAGTTAAAATTCAAGAGGAGTTTATCGGCGGAAGGCCTGAATCTTCTGCAGGAGGTACTAGATAGTAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

370

Amino Acids

40.55

Weight (kDa)

6.27

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	2 cut(s)	101, 1064
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	3 cut(s)	901, 911, 1004
AcsI	RAATTY	3 cut(s)	512, 824, 1043
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	3 cut(s)	175, 339, 1092
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	968
AgsI	TTSAA	4 cut(s)	20, 190, 520, 1048
AjnI	CCWGG	1 cut(s)	457
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
Alw21I	GWGCWC	2 cut(s)	730, 795
Alw26I	GTCTC	3 cut(s)	153, 315, 794
AlwI	GGATC	3 cut(s)	901, 911, 1004
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	2 cut(s)	794, 920
AoxI	GGCC	1 cut(s)	1069
ApeKI	GCWGC	4 cut(s)	83, 269, 360, 867
ApoI	RAATTY	3 cut(s)	512, 824, 1043
AspA2I	CCTAGG	1 cut(s)	835
AspLEI	GCGC	1 cut(s)	963
AspS9I	GGNCC	2 cut(s)	36, 374
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	2 cut(s)	794, 920
AvaII	GGWCC	2 cut(s)	36, 374
AvrII	CCTAGG	1 cut(s)	835
BaeI	ACNNNNGTAYC	2 cut(s)	1022, 1055
BanII	GRGCYC	2 cut(s)	730, 795
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	2 cut(s)	730, 795
BbvI	GCAGC	4 cut(s)	70, 281, 347, 879
BccI	CCATC	6 cut(s)	116, 322, 389, 686, 839, 880
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	153, 315, 794
BfaI	CTAG	3 cut(s)	431, 836, 1094
BfmI	CTRYAG	3 cut(s)	84, 267, 1082
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	4 cut(s)	84, 270, 361, 868
BlnI	CCTAGG	1 cut(s)	835
BlsI	GCNGC	4 cut(s)	85, 271, 362, 869
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	2 cut(s)	36, 374
BmeT110I	CYCGRG	2 cut(s)	794, 920
BmgT120I	GGNCC	2 cut(s)	36, 374
BmiI	GGNNCC	3 cut(s)	264, 754, 763
BmrFI	CCNGG	1 cut(s)	459
BmrI	ACTGGG	2 cut(s)	250, 683
BmsI	GCATC	2 cut(s)	546, 917
BmuI	ACTGGG	2 cut(s)	250, 683
BpiI	GAAGAC	1 cut(s)	825
BplI	GAGNNNNNCTC	2 cut(s)	914, 946
BpmI	CTGGAG	2 cut(s)	480, 594
BpuEI	CTTGAG	5 cut(s)	52, 796, 916, 941, 1046
BsaAI	YACGTR	1 cut(s)	969
BsaJI	CCNNGG	1 cut(s)	835
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	5 cut(s)	39, 256, 678, 743, 871
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	835
BseGI	GGATG	4 cut(s)	127, 292, 400, 862
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	240, 342, 800
BseNI	ACTGG	5 cut(s)	39, 256, 678, 743, 871
BseRI	GAGGAG	3 cut(s)	204, 812, 1066
BseXI	GCAGC	4 cut(s)	70, 281, 347, 879
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	2 cut(s)	801, 897
BshFI	GGCC	1 cut(s)	1071
BsiHKAI	GWGCWC	2 cut(s)	730, 795
BsiHKCI	CYCGRG	2 cut(s)	794, 920
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	3 cut(s)	103, 749, 756
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	3 cut(s)	153, 315, 794
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	3 cut(s)	103, 749, 756
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	1071
BsoBI	CYCGRG	2 cut(s)	794, 920
Bsp1286I	GDGCHC	2 cut(s)	730, 795
Bsp143I	GATC	4 cut(s)	424, 906, 916, 1009
BspACI	CCGC	2 cut(s)	101, 1064
BspANI	GGCC	1 cut(s)	1071
BspCNI	CTCAG	3 cut(s)	239, 341, 801
BspHI	TCATGA	1 cut(s)	1106
BspLI	GGNNCC	3 cut(s)	264, 754, 763
BspMAI	CTGCAG	3 cut(s)	88, 271, 1086
BspPI	GGATC	3 cut(s)	901, 911, 1004
BsrI	ACTGG	5 cut(s)	39, 256, 678, 743, 871
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	4 cut(s)	424, 906, 916, 1009
BssNAI	GTATAC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	835
Bst1107I	GTATAC	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	151, 707, 985
Bst6I	CTCTTC	1 cut(s)	595
BstBAI	YACGTR	1 cut(s)	969
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	226, 328, 809
BstF5I	GGATG	4 cut(s)	127, 292, 400, 862
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	4 cut(s)	427, 909, 919, 1012
BstMAI	GTCTC	3 cut(s)	153, 315, 794
BstMBI	GATC	4 cut(s)	424, 906, 916, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 269
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	3 cut(s)	84, 267, 1082
BstV1I	GCAGC	4 cut(s)	70, 281, 347, 879
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BstZ17I	GTATAC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	1071
BtsCI	GGATG	4 cut(s)	127, 292, 400, 862
BtsIMutI	CAGTG	1 cut(s)	878
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	92
CciI	TCATGA	1 cut(s)	1106
CfoI	GCGC	1 cut(s)	963
Cfr13I	GGNCC	2 cut(s)	36, 374
Csp6I	GTAC	3 cut(s)	174, 338, 1091
CspCI	CAANNNNNGTGG	2 cut(s)	1002, 1037
CviAII	CATG	5 cut(s)	115, 401, 682, 745, 1107
CviQI	GTAC	3 cut(s)	174, 338, 1091
DdeI	CTNAG	3 cut(s)	226, 328, 809
DpnI	GATC	4 cut(s)	426, 908, 918, 1011
DpnII	GATC	4 cut(s)	424, 906, 916, 1009
DrdI	GACNNNNNNGTC	1 cut(s)	216
DseDI	GACNNNNNNGTC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
EciI	GGCGGA	1 cut(s)	1079
Ecl136II	GAGCTC	2 cut(s)	728, 793
Eco130I	CCWWGG	1 cut(s)	835
Eco147I	AGGCCT	1 cut(s)	1071
Eco24I	GRGCYC	2 cut(s)	730, 795
Eco47I	GGWCC	2 cut(s)	36, 374
Eco53kI	GAGCTC	2 cut(s)	728, 793
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	794, 920
EcoICRI	GAGCTC	2 cut(s)	728, 793
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	835
EcoT38I	GRGCYC	2 cut(s)	730, 795
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	5 cut(s)	118, 404, 685, 748, 1110
FaqI	GGGAC	3 cut(s)	103, 749, 756
FatI	CATG	5 cut(s)	114, 400, 681, 744, 1106
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	84, 270, 361, 868
FokI	GGATG	4 cut(s)	134, 299, 407, 869
FriOI	GRGCYC	2 cut(s)	730, 795
Fsp4HI	GCNGC	4 cut(s)	84, 270, 361, 868
FspBI	CTAG	3 cut(s)	431, 836, 1094
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	4 cut(s)	84, 270, 361, 868
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	2 cut(s)	480, 594
HaeIII	GGCC	1 cut(s)	1071
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	963
Hin1II	CATG	5 cut(s)	118, 404, 685, 748, 1110
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HinfI	GANTC	2 cut(s)	663, 1075
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	28, 547
Hpy188I	TCNGA	4 cut(s)	319, 367, 652, 810
Hpy188III	TCNNGA	8 cut(s)	354, 422, 667, 920, 933, 947, 1048, 1107
Hpy8I	GTNNAC	2 cut(s)	28, 547
HpyAV	CCTTC	1 cut(s)	1061
HpyCH4III	ACNGT	3 cut(s)	151, 707, 985
HpyCH4IV	ACGT	2 cut(s)	144, 968
HpyCH4V	TGCA	7 cut(s)	86, 269, 437, 566, 782, 878, 1084
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 269
HpyF3I	CTNAG	3 cut(s)	226, 328, 809
HpySE526I	ACGT	2 cut(s)	144, 968
Hsp92II	CATG	5 cut(s)	118, 404, 685, 748, 1110
HspAI	GCGC	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	424, 906, 916, 1009
LmnI	GCTCC	3 cut(s)	268, 461, 758
Lsp1109I	GCAGC	4 cut(s)	70, 281, 347, 879
LweI	GCATC	2 cut(s)	546, 917
MaeI	CTAG	3 cut(s)	431, 836, 1094
MaeII	ACGT	2 cut(s)	144, 968
MaeIII	GTNAC	5 cut(s)	145, 151, 218, 323, 880
MalI	GATC	4 cut(s)	426, 908, 918, 1011
MboI	GATC	4 cut(s)	424, 906, 916, 1009
MboII	GAAGA	5 cut(s)	474, 609, 612, 830, 1070
MfeI	CAATTG	2 cut(s)	612, 640
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	2 cut(s)	730, 795
MluCI	AATT	9 cut(s)	512, 523, 561, 612, 640, 710, 804, 824, 1043
MmeI	TCCRAC	3 cut(s)	99, 264, 484
MseI	TTAA	2 cut(s)	830, 1040
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	2 cut(s)	612, 640
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	260, 269
NdeII	GATC	4 cut(s)	424, 906, 916, 1009
NlaIII	CATG	5 cut(s)	118, 404, 685, 748, 1110
NlaIV	GGNNCC	3 cut(s)	264, 754, 763
NmeAIII	GCCGAG	2 cut(s)	608, 983
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	794
PagI	TCATGA	1 cut(s)	1106
PceI	AGGCCT	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	663, 1075
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	4 cut(s)	85, 271, 362, 869
Ppu21I	YACGTR	1 cut(s)	969
Psp124BI	GAGCTC	2 cut(s)	730, 795
Psp1406I	AACGTT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	3 cut(s)	264, 754, 763
PspPI	GGNCC	2 cut(s)	36, 374
PspXI	VCTCGAGB	1 cut(s)	794
PstI	CTGCAG	3 cut(s)	88, 271, 1086
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	175, 339, 1092
RsaNI	GTAC	3 cut(s)	174, 338, 1091
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	2 cut(s)	730, 795
SaqAI	TTAA	2 cut(s)	830, 1040
SatI	GCNGC	4 cut(s)	84, 270, 361, 868
Sau3AI	GATC	4 cut(s)	424, 906, 916, 1009
Sau96I	GGNCC	2 cut(s)	36, 374
ScaI	AGTACT	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	2 cut(s)	730, 795
SfaNI	GCATC	2 cut(s)	546, 917
SfcI	CTRYAG	3 cut(s)	84, 267, 1082
Sfr274I	CTCGAG	1 cut(s)	794
SinI	GGWCC	2 cut(s)	36, 374
SlaI	CTCGAG	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	6 cut(s)	31, 775, 794, 931, 956, 1025
SmoI	CTYRAG	6 cut(s)	31, 775, 794, 931, 956, 1025
Sse9I	AATT	9 cut(s)	512, 523, 561, 612, 640, 710, 804, 824, 1043
SseBI	AGGCCT	1 cut(s)	1071
SsiI	CCGC	2 cut(s)	101, 1064
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	3 cut(s)	431, 836, 1094
SstI	GAGCTC	2 cut(s)	730, 795
StuI	AGGCCT	1 cut(s)	1071
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	3 cut(s)	151, 707, 985
TaiI	ACGT	2 cut(s)	147, 971
TaqI	TCGA	2 cut(s)	666, 795
TaqII	GACCGA	1 cut(s)	391
TasI	AATT	9 cut(s)	512, 523, 561, 612, 640, 710, 804, 824, 1043
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	663, 1075
Tru1I	TTAA	2 cut(s)	830, 1040
Tru9I	TTAA	2 cut(s)	830, 1040
TscAI	CASTG	1 cut(s)	878
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	83, 269, 360, 867
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	761
TspRI	CASTG	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	36, 374
XapI	RAATTY	3 cut(s)	512, 824, 1043
XceI	RCATGY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	794
XmaJI	CCTAGG	1 cut(s)	835
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	3 cut(s)	431, 836, 1094
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.