Rorug06G0136300

protein phosphatase 2C 27

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
19256899 .. 19257159
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0136300.1

Sequence Viewer

Length: 261 bp
ATGCAGGACTCAGATTTACTTGCTACCAGTCCCACAGTGCCTATTCAACAACAAGAACCTCACAGTGGTGGTGATGATGATAATTTCGTGTTCTTCAAGGATTTTGATATTGGAACATGGGAGTTTCCTTCTCTGGATGATTTTGTCATGGCTTGTCCTCCTCCACTTACGGATTGCTATCAAGAATTAGCAACACTTGAGTTTCCTTCTCTCGATGAATTTGTCATGGCTTGTCCTCCTTCACTTATGAATTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.63

Weight (kDa)

4.05

Isoelectric Point (pI)

62.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 218, 250
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 47, 97
AleI CACNNNNGTG 1 cut(s) 66
ApoI RAATTY 2 cut(s) 218, 250
AsuHPI GGTGA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 177
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 23
BsrI ACTGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 37, 65
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 42, 70
CviAII CATG 3 cut(s) 117, 148, 226
CviJI RGCY 2 cut(s) 152, 230
CviKI_1 RGCY 2 cut(s) 152, 230
DdeI CTNAG 1 cut(s) 10
FaeI CATG 3 cut(s) 120, 151, 229
FaiI YATR 5 cut(s) 118, 149, 227, 248, 259
FaqI GGGAC 1 cut(s) 15
FatI CATG 3 cut(s) 116, 147, 225
FokI GGATG 1 cut(s) 149
Hin1II CATG 3 cut(s) 120, 151, 229
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 134, 182, 212
HpyAV CCTTC 3 cut(s) 138, 216, 249
HpyCH4III ACNGT 2 cut(s) 37, 65
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 3 cut(s) 120, 151, 229
LpnPI CCDG 2 cut(s) 40, 119
MboII GAAGA 1 cut(s) 85
MluCI AATT 4 cut(s) 82, 185, 218, 250
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 4 cut(s) 69, 168, 171, 246
MslI CAYNNNNRTG 1 cut(s) 66
NlaIII CATG 3 cut(s) 120, 151, 229
OliI CACNNNNGTG 1 cut(s) 66
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
RseI CAYNNNNRTG 1 cut(s) 66
SchI GAGTC 1 cut(s) 2
SetI ASST 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 4 cut(s) 82, 185, 218, 250
TaaI ACNGT 2 cut(s) 37, 65
TaqI TCGA 1 cut(s) 213
TasI AATT 4 cut(s) 82, 185, 218, 250
TscAI CASTG 2 cut(s) 42, 70
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 42, 70
XapI RAATTY 2 cut(s) 218, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.