Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002573

Physical Location & Seq

Genomic Coordinates Forward (+)

12488121 .. 12489259

Gene Structure 1139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0157300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGTCACCACTATTGCTGCAAAGAACGAAAGGTTAAGAGGGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTGTTGAGATACATCACTACCTATGGCCATGGCTGTTGGAGAAAAGTCCCTGAGCAAGCTGGGCTACAAAGGTGTGGTAAGAGCTGTAGACTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGTGTTTACACCAGATGAGGAGAAATTGATTATTCGACTGCATGGGGTTGTAGGGAACAGATGGGCGCATATCGCAAAGTGTCTTCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACTCATGGATAAAGAAGAAGCTAGAGAAGCCTTCTTCATCAATGACCACATCTGCTGATCATCATCATCAATATTCCCAAATGGCATGTCTTAATCCAAACAACCAAGATCATATTGTGAATCAAACTTTCATTGCAAGGCCGTCTGCATACCCCCTATATATGTTTGAGGCTGCTTCACTTGATGAGGGTACTACTCGTGCAAACAACATTAATATCAATGTACATGTAGATCAGCATTTCCCACTCAACGTGAACTCGAACAATCTTGGGGCATGGATTTTGGATCAGCATAATGTTCAACCCCTTCCTTCTACAGCACCATTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTACTACTACTGTTAATGCAAACATGGTTGAAGTGGAATCTTGTAGCAATATTGATGAAGAAGGTGATATTTCAATGGAGTGCTTGCATAGTCATCAGGATTTGATTGCAGTAGTTCATTCCCGGCAACAGCAACCGTGTTCGAACTTTCCATTTTTGCTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061392 GO:0061416 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097305 GO:0104004 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

286

Amino Acids

32.66

Weight (kDa)

7.23

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.8e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33700
fragaria_vesca	FvH4_2g16790 FvH4_2g16790 FvH4_2g16790 FvH4_5g25660
malus_domestica	MD05G1139000.v1.1 MD05G1139300.v1.1 MD06G1006700.v1.1 MD10G1141800.v1.1
prunus_persica	Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1 Prupe.8G180100_v2.0.a1
pyrus_communis	pycom05g13440 pycom05g13450 pycom06g00590 pycom10g12160
rosa_chinensis	RchiOBHm_Chr6g0280911 RchiOBHm_Chr7g0215951
rosa_laevigata	RLG00000002604 RLG00000013017
rosa_multiflora	Rmu_co8368733.1_g000001 Rmu_sc0004772.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243750 Rroxscaffold_7G00187500
rosa_rugosa	Rorug06G0136200 Rorug06G0136300 Rorug06G0136400 Rorug06G0136500 Rorug06G0136600 Rorug07G0157300
rosa_samantha	Rh6AG249100 Rh6BG251000 Rh6CG251800 Rh6DG243500 Rh7AG295300 Rh7BG287300 Rh7CG315400 Rh7DG298000
rosa_wichuraiana	Rw6G021540 Rw7G025080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	618
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	3 cut(s)	517, 549, 697
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	626, 725, 768
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	73, 131, 156, 346
AluI	AGCT	4 cut(s)	73, 131, 156, 346
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	3 cut(s)	43, 97, 464
ApeKI	GCWGC	2 cut(s)	18, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	43, 51
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	1 cut(s)	770
AsuII	TTCGAA	1 cut(s)	836
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	685, 717
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	5, 484
BccI	CCATC	3 cut(s)	162, 258, 688
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	157, 639
BisI	GCNGC	2 cut(s)	19, 498
BlsI	GCNGC	2 cut(s)	20, 499
BmcAI	AGTACT	1 cut(s)	697
Bme1390I	CCNGG	2 cut(s)	291, 817
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	43, 51
BmiI	GGNNCC	2 cut(s)	44, 53
BmrFI	CCNGG	2 cut(s)	291, 817
BmsI	GCATC	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	817
BsaBI	GATNNNNATC	2 cut(s)	387, 666
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	2 cut(s)	387, 666
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	667, 680
BseJI	GATNNNNATC	2 cut(s)	387, 666
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	48, 114, 155
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	216, 236
BseXI	GCAGC	2 cut(s)	5, 484
BseYI	CCCAGC	2 cut(s)	131, 853
BshFI	GGCC	3 cut(s)	45, 99, 466
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	2 cut(s)	37, 104
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	37, 104
BsnI	GGCC	3 cut(s)	45, 99, 466
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1407I	TGTACA	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	382, 433, 556, 610
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	3 cut(s)	45, 99, 466
BspCNI	CTCAG	3 cut(s)	49, 115, 156
BspLI	GGNNCC	2 cut(s)	44, 53
BspPI	GGATC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	4 cut(s)	382, 433, 556, 610
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	706, 831
BstAUI	TGTACA	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	129, 779
BstDEI	CTNAG	3 cut(s)	57, 123, 164
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	667, 680
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	4 cut(s)	385, 436, 559, 613
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	382, 433, 556, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	414, 554
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	289, 815
BstSFI	CTRYAG	2 cut(s)	157, 639
BstV1I	GCAGC	2 cut(s)	5, 484
BstV2I	GAAGAC	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	45, 99, 466
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	667, 680
Cac8I	GCNNGC	2 cut(s)	129, 779
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	43, 51
Csp6I	GTAC	3 cut(s)	516, 548, 696
CviAII	CATG	8 cut(s)	101, 245, 330, 411, 551, 600, 658, 718
CviQI	GTAC	3 cut(s)	516, 548, 696
DdeI	CTNAG	3 cut(s)	57, 123, 164
DpnI	GATC	4 cut(s)	384, 435, 558, 612
DpnII	GATC	4 cut(s)	382, 433, 556, 610
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	8 cut(s)	104, 248, 333, 414, 554, 603, 661, 721
FaqI	GGGAC	2 cut(s)	37, 104
FatI	CATG	8 cut(s)	100, 244, 329, 410, 550, 599, 657, 717
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	19, 498
FokI	GGATG	2 cut(s)	667, 674
Fsp4HI	GCNGC	2 cut(s)	19, 498
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	19, 498
GsaI	CCCAGC	2 cut(s)	135, 857
HaeIII	GGCC	3 cut(s)	45, 99, 466
HapII	CCGG	1 cut(s)	817
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	8 cut(s)	104, 248, 333, 414, 554, 603, 661, 721
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	2 cut(s)	445, 731
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	3 cut(s)	161, 210, 580
Hpy188III	TCNNGA	1 cut(s)	791
Hpy8I	GTNNAC	3 cut(s)	161, 210, 580
HpyAV	CCTTC	4 cut(s)	366, 641, 645, 749
HpyCH4III	ACNGT	2 cut(s)	706, 831
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	9 cut(s)	21, 244, 461, 473, 527, 665, 713, 781, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
HpyF3I	CTNAG	3 cut(s)	57, 123, 164
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	104, 248, 333, 414, 554, 603, 661, 721
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	382, 433, 556, 610
Lsp1109I	GCAGC	2 cut(s)	5, 484
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	384, 435, 558, 612
MboI	GATC	4 cut(s)	382, 433, 556, 610
MboII	GAAGA	6 cut(s)	74, 278, 306, 351, 352, 764
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	175, 227
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	7 cut(s)	33, 52, 194, 214, 487, 505, 695
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	36, 417, 537, 674, 708
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	2 cut(s)	291, 817
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
NciI	CCSGG	1 cut(s)	817
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	382, 433, 556, 610
NlaIII	CATG	8 cut(s)	104, 248, 333, 414, 554, 603, 661, 721
NlaIV	GGNNCC	2 cut(s)	44, 53
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	2 cut(s)	414, 554
NspV	TTCGAA	1 cut(s)	836
PciI	ACATGT	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	445, 731
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	20, 499
PscI	ACATGT	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	2 cut(s)	131, 853
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	44, 53
PspPI	GGNCC	2 cut(s)	43, 51
RsaI	GTAC	3 cut(s)	517, 549, 697
RsaNI	GTAC	3 cut(s)	516, 548, 696
SaqAI	TTAA	5 cut(s)	36, 417, 537, 674, 708
SatI	GCNGC	2 cut(s)	19, 498
Sau3AI	GATC	4 cut(s)	382, 433, 556, 610
Sau96I	GGNCC	2 cut(s)	43, 51
ScaI	AGTACT	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	291, 817
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	2 cut(s)	157, 639
SfuI	TTCGAA	1 cut(s)	836
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	175, 227
SspI	AATATT	2 cut(s)	398, 745
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	289, 815
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	706, 831
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	238, 584, 836
TasI	AATT	2 cut(s)	175, 227
TatI	WGTACW	2 cut(s)	547, 695
TfiI	GAWTC	2 cut(s)	445, 731
Tru1I	TTAA	5 cut(s)	36, 417, 537, 674, 708
Tru9I	TTAA	5 cut(s)	36, 417, 537, 674, 708
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	18, 497
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	6 cut(s)	81, 321, 351, 445, 765, 800
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	537
XceI	RCATGY	2 cut(s)	414, 554
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.