Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Forward (+)

14624192 .. 14625886

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTTGATAAGAAGTTTTCCGAAGCGTTACATGATTGTAACTCTAACTTTCATCAGCACATGTATTTGCTACATCGAACGAGTAGGATTTTCGATTGCATACACAGCTGCAGCAGATGCTTCTGGTGTAAGTCAATCAAGCAAAGGCACCATTCTGTCTACATTCTATTATGGCTATGCCTGTTCACAAATTCCTGGAGGTTGGGCAGCCCAAAGGTTAGGAGGAAGGTCTGTTCTCCTCATCTCATTTGTTACATGGTCCTTAACGTATGCATTTGTCCCTCTGGACCCTAAAAATGTCAAAACTATGGTTTTGGCTCGGTTGCTTGTTGGTGTGGCACAGGGGTTCATGTTCCCTTCCATCCACTCCGTTCTCGCGCAGTGGATCCCACCAAATGAGAGGTCTAGAGCAGTTTCCCTCACAACTTCTGGGATGTACCTTGGTGCAGCTGCAGGTATGCTTGTGGTTCCAACCCTAGTGAAGTTGACAAGCCCCCAATTTGTGTTTTTGGGTGAAGCAACTTTAGGGACTATTTGGTCAGTGCTTTGGTTAAACTATGCTAGTGAACCACCAATTCAATTGTCTAAGCAAAATGGAGCATTTCCAAATCCTACTAGAAAAACCAAAATTCCATGGAGGAGTACTTTTAGAAGCTTACCTATTTGGGCTATTGTGGTGAACAATTTCACTTTCCACTATGCTTTGTTTGTGATGATGAATTGGCTTCCAACATACTTTGAACAAGGCTTGAAGCTTAGTCTTCAAGAAATGGGGACTTACAAAATGGTGCCTTATTTCAACATGTTCATGTGCTCCAACATTGGTGGATTTGTAGCAGATTATTTGATCACAAAGAGGTTCATGTCTGTGACTAGAACTAGAAAGTTCTTGAACACTTTAGGATTCATGGTTGCTTCTATTGCATTGATGGCACTGCCCAAATTCAGAACTTCATTTGGGGCTGTGATATGTTCTTCTGTGGCACTTGGTTTCTTGGCTCTAGGGAGAGCTGGGTTTGCAGTGAATCACATGGACATTGCTCCAAGGTATGCAGGAATTGTTATGGGTGTTTCTAATACAGCTGGTACATTAGCTGGGATAATTGGGGTTGATCTCACTGGGAAACTCTTAGAAGCTTCTAGATCTGCTTATGATTCCAATCTTTCGAGTCCAGAAAGCTGGAGATCAGTTTTCATGATCCCTGGGGTGCTTTGCATTTTCAGCTCAATCGGGTTTTTGCTCTTCTCAACTGGTGAGAGGATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

424

Amino Acids

46.48

Weight (kDa)

9.81

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	17 - 369	1e-49	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	2 cut(s)	146, 787
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	1 cut(s)	377
AclWI	GGATC	3 cut(s)	379, 392, 1192
AcsI	RAATTY	3 cut(s)	189, 627, 941
AfaI	GTAC	3 cut(s)	437, 643, 1087
AflIII	ACRYGT	2 cut(s)	59, 801
AgsI	TTSAA	6 cut(s)	578, 740, 751, 764, 799, 892
AjnI	CCWGG	2 cut(s)	193, 1201
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
Alw21I	GWGCWC	1 cut(s)	815
AlwI	GGATC	3 cut(s)	379, 392, 1192
ApeKI	GCWGC	5 cut(s)	107, 110, 206, 446, 449
ApoI	RAATTY	3 cut(s)	189, 627, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	258, 286
AsuHPI	GGTGA	3 cut(s)	524, 688, 1265
AvaII	GGWCC	2 cut(s)	258, 286
BamHI	GGATCC	1 cut(s)	384
BanI	GGYRCC	2 cut(s)	146, 787
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	1 cut(s)	815
BbvI	GCAGC	5 cut(s)	94, 122, 218, 436, 458
BccI	CCATC	2 cut(s)	368, 922
BciT130I	CCWGG	2 cut(s)	195, 1203
BclI	TGATCA	1 cut(s)	846
BfaI	CTAG	8 cut(s)	405, 476, 561, 615, 873, 879, 1001, 1140
BfmI	CTRYAG	2 cut(s)	108, 450
BfuAI	ACCTGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	1142
BisI	GCNGC	5 cut(s)	108, 111, 207, 447, 450
BlsI	GCNGC	5 cut(s)	109, 112, 208, 448, 451
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	195, 1203
Bme18I	GGWCC	2 cut(s)	258, 286
BmgT120I	GGNCC	2 cut(s)	258, 286
BmiI	GGNNCC	5 cut(s)	148, 288, 386, 468, 789
BmrFI	CCNGG	2 cut(s)	195, 1203
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	1128
BpiI	GAAGAC	1 cut(s)	752
BpmI	CTGGAG	2 cut(s)	216, 1201
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaJI	CCNNGG	5 cut(s)	439, 632, 1043, 1201, 1202
Bse1I	ACTGG	2 cut(s)	1123, 1255
Bse3DI	GCAATG	1 cut(s)	1035
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	2 cut(s)	195, 1203
BseDI	CCNNGG	5 cut(s)	439, 632, 1043, 1201, 1202
BseGI	GGATG	2 cut(s)	360, 438
BseJI	GATNNNNATC	1 cut(s)	1158
BseMI	GCAATG	1 cut(s)	1035
BseNI	ACTGG	2 cut(s)	1123, 1255
BseRI	GAGGAG	2 cut(s)	227, 652
BseXI	GCAGC	5 cut(s)	94, 122, 218, 436, 458
BseYI	CCCAGC	2 cut(s)	1010, 1094
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	377
BshNI	GGYRCC	2 cut(s)	146, 787
BsiHKAI	GWGCWC	1 cut(s)	815
BslFI	GGGAC	3 cut(s)	263, 541, 787
BsmFI	GGGAC	3 cut(s)	263, 541, 787
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp143I	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
Bsp19I	CCATGG	1 cut(s)	632
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	1194
BspLI	GGNNCC	5 cut(s)	148, 288, 386, 468, 789
BspMAI	CTGCAG	2 cut(s)	112, 454
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	379, 392, 1192
BspQI	GCTCTTC	1 cut(s)	1247
BspT107I	GGYRCC	2 cut(s)	146, 787
BsrDI	GCAATG	1 cut(s)	1035
BsrI	ACTGG	2 cut(s)	1123, 1255
BssECI	CCNNGG	5 cut(s)	439, 632, 1043, 1201, 1202
BssMI	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
BssT1I	CCWWGG	3 cut(s)	439, 632, 1043
Bst2UI	CCWGG	2 cut(s)	195, 1203
Bst6I	CTCTTC	1 cut(s)	1247
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	585, 755, 1129
BstDSI	CCRYGG	1 cut(s)	632
BstF5I	GGATG	2 cut(s)	360, 438
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	6 cut(s)	387, 849, 1114, 1145, 1187, 1200
BstMBI	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 116, 920, 929, 1016, 1221
BstNI	CCWGG	2 cut(s)	195, 1203
BstNSI	RCATGY	2 cut(s)	63, 805
BstSCI	CCNGG	2 cut(s)	193, 1201
BstSFI	CTRYAG	2 cut(s)	108, 450
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	5 cut(s)	94, 122, 218, 436, 458
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	2 cut(s)	384, 1142
BstXI	CCANNNNNNTGG	1 cut(s)	1179
BstYI	RGATCY	2 cut(s)	384, 1142
BtgI	CCRYGG	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	360, 438
BtsI	GCAGTG	3 cut(s)	386, 932, 1026
BtsIMutI	CAGTG	5 cut(s)	386, 546, 932, 1026, 1116
BveI	ACCTGC	1 cut(s)	443
CciI	TCATGA	1 cut(s)	1194
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	258, 286
Csp6I	GTAC	3 cut(s)	436, 642, 1086
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviQI	GTAC	3 cut(s)	436, 642, 1086
DdeI	CTNAG	3 cut(s)	585, 755, 1129
DpnI	GATC	6 cut(s)	386, 848, 1113, 1144, 1186, 1199
DpnII	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
DrdI	GACNNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	1247
EarI	CTCTTC	1 cut(s)	1247
Eco130I	CCWWGG	3 cut(s)	439, 632, 1043
Eco47I	GGWCC	2 cut(s)	258, 286
EcoRII	CCWGG	2 cut(s)	193, 1201
EcoT14I	CCWWGG	3 cut(s)	439, 632, 1043
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	439, 632, 1043
FaqI	GGGAC	3 cut(s)	263, 541, 787
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	5 cut(s)	108, 111, 207, 447, 450
FokI	GGATG	2 cut(s)	347, 445
Fsp4HI	GCNGC	5 cut(s)	108, 111, 207, 447, 450
FspBI	CTAG	8 cut(s)	405, 476, 561, 615, 873, 879, 1001, 1140
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	5 cut(s)	108, 111, 207, 447, 450
GsaI	CCCAGC	2 cut(s)	1014, 1098
GsuI	CTGGAG	2 cut(s)	216, 1201
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	3 cut(s)	652, 752, 1134
HinfI	GANTC	4 cut(s)	903, 1024, 1154, 1168
HphI	GGTGA	3 cut(s)	524, 688, 1265
Hpy166II	GTNNAC	5 cut(s)	159, 185, 486, 566, 679
Hpy188I	TCNGA	2 cut(s)	21, 947
Hpy188III	TCNNGA	7 cut(s)	284, 405, 764, 889, 1140, 1172, 1195
Hpy8I	GTNNAC	5 cut(s)	159, 185, 486, 566, 679
HpyAV	CCTTC	2 cut(s)	219, 366
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	9 cut(s)	98, 110, 272, 446, 452, 923, 1019, 1052, 1215
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 116, 920, 929, 1016, 1221
HpyF3I	CTNAG	3 cut(s)	585, 755, 1129
HpySE526I	ACGT	1 cut(s)	266
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
LguI	GCTCTTC	1 cut(s)	1247
LmnI	GCTCC	3 cut(s)	596, 818, 1045
Lsp1109I	GCAGC	5 cut(s)	94, 122, 218, 436, 458
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	8 cut(s)	405, 476, 561, 615, 873, 879, 1001, 1140
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	4 cut(s)	26, 37, 250, 868
MalI	GATC	6 cut(s)	386, 848, 1113, 1144, 1186, 1199
MboI	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
MboII	GAAGA	3 cut(s)	752, 966, 1234
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	2 cut(s)	384, 1142
MhlI	GDGCHC	1 cut(s)	815
MlyI	GAGTC	1 cut(s)	1177
MmeI	TCCRAC	3 cut(s)	494, 752, 840
MnlI	CCTC	9 cut(s)	191, 215, 248, 291, 393, 428, 630, 849, 1251
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	2 cut(s)	263, 551
MslI	CAYNNNNRTG	2 cut(s)	806, 866
MspA1I	CMGCKG	3 cut(s)	107, 449, 1082
MspR9I	CCNGG	2 cut(s)	195, 1203
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	2 cut(s)	195, 1203
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	6 cut(s)	104, 116, 920, 929, 1016, 1221
NcoI	CCATGG	1 cut(s)	632
NdeII	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
NlaIV	GGNNCC	5 cut(s)	148, 288, 386, 468, 789
NmuCI	GTSAC	1 cut(s)	868
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	2 cut(s)	63, 805
PagI	TCATGA	1 cut(s)	1194
PasI	CCCWGGG	1 cut(s)	1202
PciI	ACATGT	2 cut(s)	59, 801
PciSI	GCTCTTC	1 cut(s)	1247
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	903, 1024, 1154
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	5 cut(s)	109, 112, 208, 448, 451
PleI	GAGTC	1 cut(s)	1176
PpsI	GAGTC	1 cut(s)	1176
PscI	ACATGT	2 cut(s)	59, 801
Psp6I	CCWGG	2 cut(s)	193, 1201
PspFI	CCCAGC	2 cut(s)	1010, 1094
PspGI	CCWGG	2 cut(s)	193, 1201
PspN4I	GGNNCC	5 cut(s)	148, 288, 386, 468, 789
PspPI	GGNCC	2 cut(s)	258, 286
PstI	CTGCAG	2 cut(s)	112, 454
PsuI	RGATCY	2 cut(s)	384, 1142
PvuII	CAGCTG	3 cut(s)	107, 449, 1082
RsaI	GTAC	3 cut(s)	437, 643, 1087
RsaNI	GTAC	3 cut(s)	436, 642, 1086
RseI	CAYNNNNRTG	2 cut(s)	806, 866
SapI	GCTCTTC	1 cut(s)	1247
SaqAI	TTAA	2 cut(s)	263, 551
SatI	GCNGC	5 cut(s)	108, 111, 207, 447, 450
Sau3AI	GATC	6 cut(s)	384, 846, 1111, 1142, 1184, 1197
Sau96I	GGNCC	2 cut(s)	258, 286
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	1 cut(s)	1177
ScrFI	CCNGG	2 cut(s)	195, 1203
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	2 cut(s)	108, 450
SinI	GGWCC	2 cut(s)	258, 286
SmiMI	CAYNNNNRTG	2 cut(s)	806, 866
SspMI	CTAG	8 cut(s)	405, 476, 561, 615, 873, 879, 1001, 1140
StyD4I	CCNGG	2 cut(s)	193, 1201
StyI	CCWWGG	3 cut(s)	439, 632, 1043
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	3 cut(s)	75, 92, 1166
TatI	WGTACW	1 cut(s)	641
TfiI	GAWTC	3 cut(s)	903, 1024, 1154
Tru1I	TTAA	2 cut(s)	263, 551
Tru9I	TTAA	2 cut(s)	263, 551
TscAI	CASTG	5 cut(s)	386, 546, 939, 1026, 1123
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	5 cut(s)	107, 110, 206, 446, 449
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	8 cut(s)	40, 337, 731, 796, 850, 895, 942, 1183
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	5 cut(s)	386, 546, 939, 1026, 1123
VpaK11BI	GGWCC	2 cut(s)	258, 286
XapI	RAATTY	3 cut(s)	189, 627, 941
XbaI	TCTAGA	2 cut(s)	404, 1139
XceI	RCATGY	2 cut(s)	63, 805
XmiI	GTMKAC	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	8 cut(s)	405, 476, 561, 615, 873, 879, 1001, 1140
ZrmI	AGTACT	1 cut(s)	643
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.