Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Forward (+)

42232782 .. 42234458

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCATTTGCTACATAGAACGTGTAGGATTTTCGATTGCATACACCGCTGCAGCAGATGCTTCCGGTATAAGTCAATCAAACAAAGGCACCATTCTCTCTACATTCTATTATGGCTATGCCTGTTCACAGATTCCTGGAGGTTGGGCTGCTCAAAAGTTTGGAGGAAGGGGTTCATGTTCCCTTCCATCCACTCTGTTCTCGCTCAATGGGTTCCACAAAATGAGAGGTCCAGATCAGTTTCCCTCACAACTTCTGGGATGTACCTTGGTGCAGCTGCAGGTATGCTTGTGGTTCCAACCCTAGTGAAGTTGACAAGCCCCCAATTTGTGTTTTTGGGTGAAGCAACTTTAGGGACTATTTGGTCAGTGCTTTGGTTAAACTATGCTAGTGAACCACCAATTCAATTGTCTAAGCAAAATGGAGCATTTCCTAATTCTACTAGAAAAACCAAAATTCCATGGAAGAGTATTTTTAGAAGCTTACCTATTTGGGCTATTGTGGTGAACAATTTCACTTTCCACTATGCTTTGTATGTCATGATGAATTGGCTTCCAACATACTTTGAACAAGGCCTGAAGCTTAGTCTTCAAGAAATGGGGACTTACAAAATGGTGCCTTATTTCAACATGTTCATGTTCTCAAACATTGGTGGATTTGTAGCTGATTATTTAATCACAAAAAGGCTCATGTCTGTGACTAGAACTAGAAAGTTCTTGAACACTTTAGGGTTCATGGTTGCTTCTATTGCATTGATGGCACTGCCCAAATTCAGAACTTCAATTGGGGCTGTGATTTGTTCTTCATTTGCACTTGGGTTTTTGGCTTTAGGCAGAGCCGGGTTTGCAGTGAATCACATGGACATTGCTCCAAGGTATGCAGGAATTGTGATGGGTGTGTCTAACACAGCTGGTACATTAGCTGGGATAATTGGGGTTGATCTCACTGGGAAACTTTTAGAAGCTTCTAGATCTGCTCATGATTCGGATCTTTCGAGTCCAGAAAGCTGGACATCAGTTTTCATGATTCCTGGGGTGCTTTGCATTTTCAGCTCAATCTGGTTTTTGATCTTCTCAACTGGGGAGAGGATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

365

Amino Acids

41.19

Weight (kDa)

9.85

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	57 - 311	2.7e-30	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	2 cut(s)	87, 613
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	993
AcsI	RAATTY	2 cut(s)	453, 767
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	263, 913
AflIII	ACRYGT	2 cut(s)	20, 627
AgsI	TTSAA	6 cut(s)	404, 566, 590, 625, 718, 780
AjnI	CCWGG	2 cut(s)	134, 1027
AluBI	AGCT	9 cut(s)	275, 480, 580, 662, 908, 920, 962, 1005, 1050
AluI	AGCT	9 cut(s)	275, 480, 580, 662, 908, 920, 962, 1005, 1050
AlwI	GGATC	1 cut(s)	993
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	5 cut(s)	48, 51, 147, 272, 275
ApoI	RAATTY	2 cut(s)	453, 767
Asp700I	GAANNNNTTC	2 cut(s)	170, 509
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	2 cut(s)	350, 514
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	87, 613
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	5 cut(s)	35, 63, 134, 262, 284
BccI	CCATC	3 cut(s)	194, 748, 883
BciT130I	CCWGG	2 cut(s)	136, 1029
BcnI	CCSGG	1 cut(s)	838
BfaI	CTAG	6 cut(s)	302, 387, 441, 699, 705, 966
BfmI	CTRYAG	2 cut(s)	49, 276
BfuAI	ACCTGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	968
BisI	GCNGC	5 cut(s)	49, 52, 148, 273, 276
BlsI	GCNGC	5 cut(s)	50, 53, 149, 274, 277
Bme1390I	CCNGG	3 cut(s)	136, 838, 1029
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	4 cut(s)	89, 213, 294, 615
BmrFI	CCNGG	3 cut(s)	136, 838, 1029
BmrI	ACTGGG	2 cut(s)	954, 1086
BmsI	GCATC	1 cut(s)	47
BmuI	ACTGGG	2 cut(s)	954, 1086
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	838
BsaBI	GATNNNNATC	1 cut(s)	984
BsaJI	CCNNGG	4 cut(s)	265, 458, 869, 1028
BsaWI	WCCGGW	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	949, 1081
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	984
BseBI	CCWGG	2 cut(s)	136, 1029
BseDI	CCNNGG	4 cut(s)	265, 458, 869, 1028
BseGI	GGATG	2 cut(s)	186, 264
BseJI	GATNNNNATC	1 cut(s)	984
BseMI	GCAATG	1 cut(s)	861
BseNI	ACTGG	2 cut(s)	949, 1081
BseXI	GCAGC	5 cut(s)	35, 63, 134, 262, 284
BseYI	CCCAGC	1 cut(s)	920
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	573
BshNI	GGYRCC	2 cut(s)	87, 613
BsiSI	CCGG	2 cut(s)	64, 837
BslFI	GGGAC	2 cut(s)	367, 613
BsmFI	GGGAC	2 cut(s)	367, 613
BsnI	GGCC	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	233, 937, 968, 985, 1065
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	573
BspHI	TCATGA	3 cut(s)	537, 976, 1020
BspLI	GGNNCC	4 cut(s)	89, 213, 294, 615
BspMAI	CTGCAG	2 cut(s)	53, 280
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	993
BspT107I	GGYRCC	2 cut(s)	87, 613
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	949, 1081
BssECI	CCNNGG	4 cut(s)	265, 458, 869, 1028
BssMI	GATC	5 cut(s)	233, 937, 968, 985, 1065
BssT1I	CCWWGG	3 cut(s)	265, 458, 869
Bst2UI	CCWGG	2 cut(s)	136, 1029
Bst6I	CTCTTC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	411, 581
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	186, 264
BstKTI	GATC	5 cut(s)	236, 940, 971, 988, 1068
BstMBI	GATC	5 cut(s)	233, 937, 968, 985, 1065
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 57, 746, 755, 842, 1047
BstNI	CCWGG	2 cut(s)	136, 1029
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	134, 836, 1027
BstSFI	CTRYAG	2 cut(s)	49, 276
BstV1I	GCAGC	5 cut(s)	35, 63, 134, 262, 284
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	968, 985
BstXI	CCANNNNNNTGG	1 cut(s)	1005
BstYI	RGATCY	2 cut(s)	968, 985
BsuRI	GGCC	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	186, 264
BtsI	GCAGTG	2 cut(s)	758, 852
BtsIMutI	CAGTG	4 cut(s)	372, 758, 852, 942
BveI	ACCTGC	1 cut(s)	269
CciI	TCATGA	3 cut(s)	537, 976, 1020
Cfr13I	GGNCC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	262, 912
CviQI	GTAC	2 cut(s)	262, 912
DdeI	CTNAG	2 cut(s)	411, 581
DpnI	GATC	5 cut(s)	235, 939, 970, 987, 1067
DpnII	GATC	5 cut(s)	233, 937, 968, 985, 1065
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	3 cut(s)	265, 458, 869
Eco147I	AGGCCT	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	134, 1027
EcoT14I	CCWWGG	3 cut(s)	265, 458, 869
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	265, 458, 869
FaqI	GGGAC	2 cut(s)	367, 613
Fnu4HI	GCNGC	5 cut(s)	49, 52, 148, 273, 276
FokI	GGATG	2 cut(s)	173, 271
Fsp4HI	GCNGC	5 cut(s)	49, 52, 148, 273, 276
FspBI	CTAG	6 cut(s)	302, 387, 441, 699, 705, 966
GluI	GCNGC	5 cut(s)	49, 52, 148, 273, 276
GsaI	CCCAGC	1 cut(s)	924
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	2 cut(s)	64, 837
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	3 cut(s)	478, 578, 960
HinfI	GANTC	5 cut(s)	131, 850, 980, 994, 1024
HpaII	CCGG	2 cut(s)	64, 837
HphI	GGTGA	2 cut(s)	350, 514
Hpy166II	GTNNAC	4 cut(s)	126, 312, 392, 505
Hpy188I	TCNGA	2 cut(s)	773, 985
Hpy188III	TCNNGA	8 cut(s)	231, 538, 590, 715, 966, 977, 998, 1021
Hpy8I	GTNNAC	4 cut(s)	126, 312, 392, 505
HpyAV	CCTTC	2 cut(s)	160, 192
HpyCH4IV	ACGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 57, 746, 755, 842, 1047
HpyF3I	CTNAG	2 cut(s)	411, 581
HpySE526I	ACGT	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	233, 937, 968, 985, 1065
LmnI	GCTCC	2 cut(s)	422, 871
Lsp1109I	GCAGC	5 cut(s)	35, 63, 134, 262, 284
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	6 cut(s)	302, 387, 441, 699, 705, 966
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	5 cut(s)	235, 939, 970, 987, 1067
MboI	GATC	5 cut(s)	233, 937, 968, 985, 1065
MboII	GAAGA	4 cut(s)	475, 578, 792, 1060
MfeI	CAATTG	2 cut(s)	404, 780
MflI	RGATCY	2 cut(s)	968, 985
MlyI	GAGTC	1 cut(s)	1003
MmeI	TCCRAC	2 cut(s)	320, 578
MnlI	CCTC	5 cut(s)	132, 156, 219, 254, 1077
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	170, 509
MseI	TTAA	2 cut(s)	377, 671
MslI	CAYNNNNRTG	2 cut(s)	632, 692
MspA1I	CMGCKG	3 cut(s)	48, 275, 908
MspI	CCGG	2 cut(s)	64, 837
MspR9I	CCNGG	3 cut(s)	136, 838, 1029
MunI	CAATTG	2 cut(s)	404, 780
MvaI	CCWGG	2 cut(s)	136, 1029
MwoI	GCNNNNNNNGC	6 cut(s)	45, 57, 746, 755, 842, 1047
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	5 cut(s)	233, 937, 968, 985, 1065
NlaIV	GGNNCC	4 cut(s)	89, 213, 294, 615
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	631
PagI	TCATGA	3 cut(s)	537, 976, 1020
PceI	AGGCCT	1 cut(s)	573
PciI	ACATGT	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	989
PdmI	GAANNNNTTC	2 cut(s)	170, 509
PfeI	GAWTC	4 cut(s)	131, 850, 980, 1024
PfoI	TCCNGGA	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	50, 53, 149, 274, 277
PleI	GAGTC	1 cut(s)	1002
PpsI	GAGTC	1 cut(s)	1002
PscI	ACATGT	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	134, 1027
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	2 cut(s)	134, 1027
PspN4I	GGNNCC	4 cut(s)	89, 213, 294, 615
PspPI	GGNCC	1 cut(s)	228
PstI	CTGCAG	2 cut(s)	53, 280
PsuI	RGATCY	2 cut(s)	968, 985
PvuII	CAGCTG	2 cut(s)	275, 908
RsaI	GTAC	2 cut(s)	263, 913
RsaNI	GTAC	2 cut(s)	262, 912
RseI	CAYNNNNRTG	2 cut(s)	632, 692
SaqAI	TTAA	2 cut(s)	377, 671
SatI	GCNGC	5 cut(s)	49, 52, 148, 273, 276
Sau3AI	GATC	5 cut(s)	233, 937, 968, 985, 1065
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	3 cut(s)	136, 838, 1029
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	2 cut(s)	49, 276
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	632, 692
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	6 cut(s)	302, 387, 441, 699, 705, 966
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	3 cut(s)	134, 836, 1027
StyI	CCWWGG	3 cut(s)	265, 458, 869
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	33, 992
TfiI	GAWTC	4 cut(s)	131, 850, 980, 1024
Tru1I	TTAA	2 cut(s)	377, 671
Tru9I	TTAA	2 cut(s)	377, 671
TscAI	CASTG	4 cut(s)	372, 765, 852, 949
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	5 cut(s)	48, 51, 147, 272, 275
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	6 cut(s)	163, 557, 622, 721, 792, 1009
TspRI	CASTG	4 cut(s)	372, 765, 852, 949
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	453, 767
XbaI	TCTAGA	1 cut(s)	965
XceI	RCATGY	1 cut(s)	631
XmnI	GAANNNNTTC	2 cut(s)	170, 509
XspI	CTAG	6 cut(s)	302, 387, 441, 699, 705, 966
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.