Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Reverse (-)

24897352 .. 24898668

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGCTCAAAGTTGTGCTACTTTCTCAGATTAATTCATACCAAAGATTTTCGATTGCATACACCGCTGCAGCAGATGCTTCCGGTATAAGTCAATCAAACAAAGGCACCATTCTCTCTACATTCTATTATGGCTATGCCTGTTCACAAATTCCTGGAGGTTGGGCAGCTCAAAAGTTTGGAGGAAGGTCTGTTCTCCTCATCTCATTTGTTTCATGGTCCTTAACATATGCTTTTGTCCCTCTGGACCCTAAAAATGTCAAAACTACGGTTTTGGCTCGGTTGCTTGTTGGTGTGGCACAGGGGTTCATGTTCCCTTCCATCCACTCTGTTCTCGCTCAATGGGTTCCACAAAATGAGAGGTCCAGATCAGTTTCCCTCACAACTTCTGGGATGTACCTCGGTGCAGCTGCAGGTATGCTTGTGGTTCCAACCCTAGTGAAGTTGACAAGCCCCCAATTTGTGTTTTTGGGTGAAGCAACTTTAGGGACTATTTGGTCAGTGCTTTGGTTAAACTATGCTACTGAACCACCAATTCAATTGTCTAAGCAAAATGGAGCATTTCCTAATTCTACTAGAAAAACCAAAATTCCATGGAAGACTATTTTTAGAAGCCTACCTATTTGGGCTATTGTGGTGAACAATTTCACTTTCCACTATGCTTTGTATGTCATGATGAATTGGCTTCCAACATACTTTGAACAAGGCCTGAAGCCTAGTCTCCAAGAAATGGGGACTTACAAAATGGTGCCTTATTTCAACATGTTCATGTTCTCAAACATTGGTGGATTTGTAGCTGATTATTTAATCACAAAGAGGCTCATGTCTGTGACTAGAACTAGAAAGTTCTTGAACACTTTAGGGTTCATAGTTGCTTCTATTGCGTTGATGGCACTGCCCAAATTCAGAACTTCAATTGGGGCTGTGATTTGTTCTTCATTTGCACTTGGGTTTTTGGCTTTAGGCAGAGCTGGGTTTGCAGTGAATCACATGGACATTGCTCCAAGGTATGCAGGAATTGTGATGGGTGTGTCTAACACAGCTGGTACATTAGCTGGGATAATTGGGGTTGATCTCACTGGGAAACTTTTAGAAGCTTCTAGATCTGCTCATGATTCGGATCTTTCGAGTCCAGAAAGCTGGACATCAGTTTTCATGATTCCTGGGGTGCTTTGCATTTTCGGCTCAATCGGGTTTTTGATCTTCTCAACTGGGGAGAGGATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

410

Amino Acids

44.75

Weight (kDa)

9.76

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	16 - 355	2.3e-46	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	401
AccB1I	GGYRCC	2 cut(s)	104, 745
AccB7I	CCANNNNNTGG	1 cut(s)	727
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	1125
AcsI	RAATTY	3 cut(s)	147, 585, 899
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	2 cut(s)	395, 1045
AfiI	CCNNNNNNNGG	1 cut(s)	727
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	5 cut(s)	536, 698, 757, 850, 912
AjnI	CCWGG	2 cut(s)	151, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	8 cut(s)	167, 407, 794, 968, 1040, 1052, 1094, 1137
AluI	AGCT	8 cut(s)	167, 407, 794, 968, 1040, 1052, 1094, 1137
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	1 cut(s)	1125
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	5 cut(s)	65, 68, 164, 404, 407
ApoI	RAATTY	3 cut(s)	147, 585, 899
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	216, 244, 360
AsuHPI	GGTGA	2 cut(s)	482, 646
AvaII	GGWCC	3 cut(s)	216, 244, 360
BanI	GGYRCC	2 cut(s)	104, 745
BbsI	GAAGAC	1 cut(s)	602
BbvI	GCAGC	5 cut(s)	52, 80, 176, 394, 416
BccI	CCATC	3 cut(s)	326, 880, 1015
BciT130I	CCWGG	2 cut(s)	153, 1161
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	6 cut(s)	434, 573, 714, 831, 837, 1098
BfmI	CTRYAG	2 cut(s)	66, 408
BfuAI	ACCTGC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	1100
BisI	GCNGC	5 cut(s)	66, 69, 165, 405, 408
BlsI	GCNGC	5 cut(s)	67, 70, 166, 406, 409
Bme1390I	CCNGG	2 cut(s)	153, 1161
Bme18I	GGWCC	3 cut(s)	216, 244, 360
BmgT120I	GGNCC	3 cut(s)	216, 244, 360
BmiI	GGNNCC	5 cut(s)	106, 246, 345, 426, 747
BmrFI	CCNGG	2 cut(s)	153, 1161
BmrI	ACTGGG	2 cut(s)	1086, 1218
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	2 cut(s)	1086, 1218
BpiI	GAAGAC	1 cut(s)	602
BpmI	CTGGAG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	4 cut(s)	397, 590, 1001, 1160
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	2 cut(s)	1081, 1213
Bse3DI	GCAATG	1 cut(s)	993
Bse8I	GATNNNNATC	1 cut(s)	1116
BseBI	CCWGG	2 cut(s)	153, 1161
BseDI	CCNNGG	4 cut(s)	397, 590, 1001, 1160
BseGI	GGATG	2 cut(s)	318, 396
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	1081, 1213
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	5 cut(s)	52, 80, 176, 394, 416
BseYI	CCCAGC	2 cut(s)	968, 1052
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	705
BshNI	GGYRCC	2 cut(s)	104, 745
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	3 cut(s)	221, 499, 745
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	3 cut(s)	221, 499, 745
BsnI	GGCC	1 cut(s)	705
Bsp143I	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
Bsp19I	CCATGG	1 cut(s)	590
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	3 cut(s)	669, 1108, 1152
BspLI	GGNNCC	5 cut(s)	106, 246, 345, 426, 747
BspMAI	CTGCAG	2 cut(s)	70, 412
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	1125
BspT107I	GGYRCC	2 cut(s)	104, 745
BsrDI	GCAATG	1 cut(s)	993
BsrI	ACTGG	2 cut(s)	1081, 1213
BssECI	CCNNGG	4 cut(s)	397, 590, 1001, 1160
BssMI	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
BssT1I	CCWWGG	2 cut(s)	590, 1001
Bst2UI	CCWGG	2 cut(s)	153, 1161
Bst4CI	ACNGT	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	24, 543
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	318, 396
BstKTI	GATC	5 cut(s)	368, 1072, 1103, 1120, 1200
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 74, 878, 887, 974, 1179
BstNI	CCWGG	2 cut(s)	153, 1161
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	2 cut(s)	151, 1159
BstSFI	CTRYAG	2 cut(s)	66, 408
BstV1I	GCAGC	5 cut(s)	52, 80, 176, 394, 416
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	2 cut(s)	1100, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	1137
BstYI	RGATCY	2 cut(s)	1100, 1117
BsuRI	GGCC	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	318, 396
BtsI	GCAGTG	2 cut(s)	890, 984
BtsIMutI	CAGTG	4 cut(s)	504, 890, 984, 1074
BveI	ACCTGC	1 cut(s)	401
CciI	TCATGA	3 cut(s)	669, 1108, 1152
Cfr13I	GGNCC	3 cut(s)	216, 244, 360
Csp6I	GTAC	2 cut(s)	394, 1044
CviQI	GTAC	2 cut(s)	394, 1044
DdeI	CTNAG	2 cut(s)	24, 543
DpnI	GATC	5 cut(s)	367, 1071, 1102, 1119, 1199
DpnII	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eco130I	CCWWGG	2 cut(s)	590, 1001
Eco147I	AGGCCT	1 cut(s)	705
Eco47I	GGWCC	3 cut(s)	216, 244, 360
Eco57I	CTGAAG	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	151, 1159
EcoT14I	CCWWGG	2 cut(s)	590, 1001
ErhI	CCWWGG	2 cut(s)	590, 1001
FaqI	GGGAC	3 cut(s)	221, 499, 745
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	66, 69, 165, 405, 408
FokI	GGATG	2 cut(s)	305, 403
Fsp4HI	GCNGC	5 cut(s)	66, 69, 165, 405, 408
FspBI	CTAG	6 cut(s)	434, 573, 714, 831, 837, 1098
GluI	GCNGC	5 cut(s)	66, 69, 165, 405, 408
GsaI	CCCAGC	2 cut(s)	972, 1056
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	705
HapII	CCGG	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	4 cut(s)	982, 1112, 1126, 1156
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	482, 646
Hpy166II	GTNNAC	3 cut(s)	143, 444, 637
Hpy188I	TCNGA	3 cut(s)	27, 905, 1117
Hpy188III	TCNNGA	8 cut(s)	242, 363, 670, 847, 1098, 1109, 1130, 1153
Hpy8I	GTNNAC	3 cut(s)	143, 444, 637
HpyAV	CCTTC	2 cut(s)	177, 324
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	8 cut(s)	56, 68, 404, 410, 941, 977, 1010, 1173
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 74, 878, 887, 974, 1179
HpyF3I	CTNAG	2 cut(s)	24, 543
Kzo9I	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
LmnI	GCTCC	2 cut(s)	554, 1003
Lsp1109I	GCAGC	5 cut(s)	52, 80, 176, 394, 416
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	6 cut(s)	434, 573, 714, 831, 837, 1098
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	5 cut(s)	367, 1071, 1102, 1119, 1199
MboI	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
MboII	GAAGA	3 cut(s)	607, 924, 1192
MfeI	CAATTG	2 cut(s)	536, 912
MflI	RGATCY	2 cut(s)	1100, 1117
MlyI	GAGTC	1 cut(s)	1135
MmeI	TCCRAC	2 cut(s)	452, 710
MnlI	CCTC	9 cut(s)	149, 173, 206, 249, 351, 386, 407, 807, 1209
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	4 cut(s)	30, 221, 509, 803
MslI	CAYNNNNRTG	2 cut(s)	764, 824
MspA1I	CMGCKG	3 cut(s)	65, 407, 1040
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	153, 1161
MunI	CAATTG	2 cut(s)	536, 912
MvaI	CCWGG	2 cut(s)	153, 1161
MwoI	GCNNNNNNNGC	6 cut(s)	62, 74, 878, 887, 974, 1179
NcoI	CCATGG	1 cut(s)	590
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
NlaIV	GGNNCC	5 cut(s)	106, 246, 345, 426, 747
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	1 cut(s)	763
PagI	TCATGA	3 cut(s)	669, 1108, 1152
PceI	AGGCCT	1 cut(s)	705
PciI	ACATGT	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	1121
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	982, 1112, 1156
PflMI	CCANNNNNTGG	1 cut(s)	727
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	67, 70, 166, 406, 409
PleI	GAGTC	1 cut(s)	1134
PpsI	GAGTC	1 cut(s)	1134
PscI	ACATGT	1 cut(s)	759
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	151, 1159
PspFI	CCCAGC	2 cut(s)	968, 1052
PspGI	CCWGG	2 cut(s)	151, 1159
PspN4I	GGNNCC	5 cut(s)	106, 246, 345, 426, 747
PspPI	GGNCC	3 cut(s)	216, 244, 360
PstI	CTGCAG	2 cut(s)	70, 412
PsuI	RGATCY	2 cut(s)	1100, 1117
PvuII	CAGCTG	2 cut(s)	407, 1040
RsaI	GTAC	2 cut(s)	395, 1045
RsaNI	GTAC	2 cut(s)	394, 1044
RseI	CAYNNNNRTG	2 cut(s)	764, 824
SaqAI	TTAA	4 cut(s)	30, 221, 509, 803
SatI	GCNGC	5 cut(s)	66, 69, 165, 405, 408
Sau3AI	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
Sau96I	GGNCC	3 cut(s)	216, 244, 360
SchI	GAGTC	1 cut(s)	1135
ScrFI	CCNGG	2 cut(s)	153, 1161
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	2 cut(s)	66, 408
SinI	GGWCC	3 cut(s)	216, 244, 360
SmiMI	CAYNNNNRTG	2 cut(s)	764, 824
SseBI	AGGCCT	1 cut(s)	705
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	6 cut(s)	434, 573, 714, 831, 837, 1098
StuI	AGGCCT	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	151, 1159
StyI	CCWWGG	2 cut(s)	590, 1001
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	50, 1124
TfiI	GAWTC	3 cut(s)	982, 1112, 1156
Tru1I	TTAA	4 cut(s)	30, 221, 509, 803
Tru9I	TTAA	4 cut(s)	30, 221, 509, 803
TscAI	CASTG	4 cut(s)	504, 897, 984, 1081
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	5 cut(s)	65, 68, 164, 404, 407
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	8 cut(s)	24, 201, 295, 689, 754, 853, 924, 1141
TspRI	CASTG	4 cut(s)	504, 897, 984, 1081
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	3 cut(s)	216, 244, 360
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	3 cut(s)	147, 585, 899
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	6 cut(s)	434, 573, 714, 831, 837, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.