Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Forward (+)

44314725 .. 44316041

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCTCAAAGTTATGCTACTTTCTCAGATTAATTCATACCAAAGTATGTTGATAAAATATTTTCCCAAGCGTTACATGATTGTAACTCTAACTTTCATCAGCACATGCATTTGCTACATAGAACGTGTAGGATTTTCGATTGCATACACCGCTGCAGCAGATGCTTCCGGTATAAGTCAATCAAACAAAGGCACCATTCTCTCTACATTCTATTATGGCTATGCCTGTTCACAGATTCCTGGAGGTTGGGCTGCTCAAAAGTTTGGAGGAAGGTCTGTTCTCCTCATCTCATTTGTTTCATGGTCCTTAACATATGCTTTTGTCCCTCTGGACCCTAAAAATGTTAAAACTATGGTTTTGGCTCGGTTGCTTGTTGGTGTGGCACAGGGGTTCATGTTCCCTTCCATCCACTCTGTTCTCGCTCAATGGGTTCCACAAAATGAGAGGTCCAGATCAGTTTCCCTCACAACTTCTGGGATGTACCTTGGTGCAGCTGCAGGTATGCTTGTGGTTCCAACCCTAGTGAAGTTGACAAGCCCCCAATTTGTGTTTTTGGGTGAAGCAACTTTAGGGACTATTTGGTCAGTGCTTTGGTTAAACTATGCTAGTGAACCACCAATTCAATTGTCTAAGCAAAATGGAGCATTTCCTAATTCTACTAGAAAAACCAAAATTCCATGGAAGAGTATTTTTAGAAGCTTACCTATTTGGGCTATTGTGGTGAACAATTTCACTTTCCACTATGCTTTGTATGTCATGATGAATTGGCTTCCAACATACTTTGAACAAGGCCTGAAGCTTAGTCTTCAAGAAATGGGGACTTACAAAATGGTGCCTTATTTCAACATGTTCATGTTCTCAAACATTGGTGGATTTGTAGCTGATTATTTAATCACAAAAAGGCTCATGTCTGTGACTAGAACTAGAAAGTTCTTGAACACTTTAGGGTTCATGGTTGCTTCTATTGCATTGATGGCACTGCCCAAATTCAGAACTTCAATTGGGGCTGTGATTTGTTCTTCATTTGCACTTGGGTTTTTGGCTTTAGGCAGAGCTGGGTTTGCAGTGAATCACATGGACATTGCTCCAAGGTATGCAGGAATTGTGATGGGTGTGTCTAACACAGCTGGTACATTAGCTGGGATAATTGGGGTTGATCTCACTGGGAAACTTTTAGAAGCTTCTAGATCTGCTCATGATTCGGATCTTTCGAGTCCAGAAAGCTGGACATCAGTTTTCATGATTCCTGGGGTGCTTTGCATTTTCAGCTCAATCTGGTTTTTGATCTTCTCAACTGGTGAGAGGATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

438

Amino Acids

48.4

Weight (kDa)

9.69

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	32 - 384	4.4e-49	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	488
AccB1I	GGYRCC	2 cut(s)	191, 832
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	1212
AcsI	RAATTY	2 cut(s)	672, 986
AcuI	CTGAAG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	482, 1132
AflIII	ACRYGT	2 cut(s)	124, 846
AgsI	TTSAA	6 cut(s)	623, 785, 809, 844, 937, 999
AjnI	CCWGG	2 cut(s)	238, 1246
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AlwI	GGATC	1 cut(s)	1212
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	5 cut(s)	152, 155, 251, 491, 494
ApoI	RAATTY	2 cut(s)	672, 986
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	728
AspS9I	GGNCC	3 cut(s)	303, 331, 447
AsuHPI	GGTGA	3 cut(s)	569, 733, 1310
AvaII	GGWCC	3 cut(s)	303, 331, 447
BanI	GGYRCC	2 cut(s)	191, 832
BbsI	GAAGAC	1 cut(s)	797
BbvI	GCAGC	5 cut(s)	139, 167, 238, 481, 503
BccI	CCATC	3 cut(s)	413, 967, 1102
BciT130I	CCWGG	2 cut(s)	240, 1248
BfaI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
BfmI	CTRYAG	2 cut(s)	153, 495
BfuAI	ACCTGC	1 cut(s)	488
BglII	AGATCT	1 cut(s)	1187
BisI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
BlsI	GCNGC	5 cut(s)	154, 157, 253, 493, 496
Bme1390I	CCNGG	2 cut(s)	240, 1248
Bme18I	GGWCC	3 cut(s)	303, 331, 447
BmgT120I	GGNCC	3 cut(s)	303, 331, 447
BmiI	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
BmrFI	CCNGG	2 cut(s)	240, 1248
BmrI	ACTGGG	1 cut(s)	1173
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	1173
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaJI	CCNNGG	4 cut(s)	484, 677, 1088, 1247
BsaWI	WCCGGW	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	1168, 1300
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	2 cut(s)	240, 1248
BseDI	CCNNGG	4 cut(s)	484, 677, 1088, 1247
BseGI	GGATG	2 cut(s)	405, 483
BseJI	GATNNNNATC	1 cut(s)	1203
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	1168, 1300
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	139, 167, 238, 481, 503
BseYI	CCCAGC	2 cut(s)	1055, 1139
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	792
BshNI	GGYRCC	2 cut(s)	191, 832
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	3 cut(s)	308, 586, 832
BsmFI	GGGAC	3 cut(s)	308, 586, 832
BsnI	GGCC	1 cut(s)	792
Bsp143I	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	3 cut(s)	756, 1195, 1239
BspLI	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
BspMAI	CTGCAG	2 cut(s)	157, 499
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	1212
BspT107I	GGYRCC	2 cut(s)	191, 832
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	2 cut(s)	1168, 1300
BssECI	CCNNGG	4 cut(s)	484, 677, 1088, 1247
BssMI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
BssT1I	CCWWGG	3 cut(s)	484, 677, 1088
Bst2UI	CCWGG	2 cut(s)	240, 1248
Bst6I	CTCTTC	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	24, 630, 800
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	405, 483
BstKTI	GATC	5 cut(s)	455, 1159, 1190, 1207, 1287
BstMBI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 161, 965, 974, 1061, 1266
BstNI	CCWGG	2 cut(s)	240, 1248
BstNSI	RCATGY	2 cut(s)	108, 850
BstSCI	CCNGG	2 cut(s)	238, 1246
BstSFI	CTRYAG	2 cut(s)	153, 495
BstV1I	GCAGC	5 cut(s)	139, 167, 238, 481, 503
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	2 cut(s)	1187, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	1224
BstYI	RGATCY	2 cut(s)	1187, 1204
BsuRI	GGCC	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	2 cut(s)	405, 483
BtsI	GCAGTG	2 cut(s)	977, 1071
BtsIMutI	CAGTG	4 cut(s)	591, 977, 1071, 1161
BveI	ACCTGC	1 cut(s)	488
CciI	TCATGA	3 cut(s)	756, 1195, 1239
Cfr13I	GGNCC	3 cut(s)	303, 331, 447
Csp6I	GTAC	2 cut(s)	481, 1131
CviQI	GTAC	2 cut(s)	481, 1131
DdeI	CTNAG	3 cut(s)	24, 630, 800
DpnI	GATC	5 cut(s)	454, 1158, 1189, 1206, 1286
DpnII	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	3 cut(s)	484, 677, 1088
Eco147I	AGGCCT	1 cut(s)	792
Eco47I	GGWCC	3 cut(s)	303, 331, 447
Eco57I	CTGAAG	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	238, 1246
EcoT14I	CCWWGG	3 cut(s)	484, 677, 1088
EcoT22I	ATGCAT	1 cut(s)	110
ErhI	CCWWGG	3 cut(s)	484, 677, 1088
FaqI	GGGAC	3 cut(s)	308, 586, 832
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
FokI	GGATG	2 cut(s)	392, 490
Fsp4HI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
FspBI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
GluI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
GsaI	CCCAGC	2 cut(s)	1059, 1143
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HindIII	AAGCTT	3 cut(s)	697, 797, 1179
HinfI	GANTC	5 cut(s)	235, 1069, 1199, 1213, 1243
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	569, 733, 1310
Hpy166II	GTNNAC	4 cut(s)	230, 531, 611, 724
Hpy188I	TCNGA	3 cut(s)	27, 992, 1204
Hpy188III	TCNNGA	9 cut(s)	329, 450, 757, 809, 934, 1185, 1196, 1217, 1240
Hpy8I	GTNNAC	4 cut(s)	230, 531, 611, 724
HpyAV	CCTTC	2 cut(s)	264, 411
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 161, 965, 974, 1061, 1266
HpyF3I	CTNAG	3 cut(s)	24, 630, 800
HpySE526I	ACGT	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
LmnI	GCTCC	2 cut(s)	641, 1090
Lsp1109I	GCAGC	5 cut(s)	139, 167, 238, 481, 503
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	71, 82, 913
MalI	GATC	5 cut(s)	454, 1158, 1189, 1206, 1286
MboI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
MboII	GAAGA	4 cut(s)	694, 797, 1011, 1279
MfeI	CAATTG	2 cut(s)	623, 999
MflI	RGATCY	2 cut(s)	1187, 1204
MlyI	GAGTC	1 cut(s)	1222
MmeI	TCCRAC	2 cut(s)	539, 797
MnlI	CCTC	7 cut(s)	236, 260, 293, 336, 438, 473, 1296
Mph1103I	ATGCAT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	5 cut(s)	30, 308, 345, 596, 890
MslI	CAYNNNNRTG	2 cut(s)	851, 911
MspA1I	CMGCKG	3 cut(s)	152, 494, 1127
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	240, 1248
MunI	CAATTG	2 cut(s)	623, 999
MvaI	CCWGG	2 cut(s)	240, 1248
MwoI	GCNNNNNNNGC	6 cut(s)	149, 161, 965, 974, 1061, 1266
NcoI	CCATGG	1 cut(s)	677
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
NlaIV	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
NmuCI	GTSAC	1 cut(s)	913
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	2 cut(s)	108, 850
PagI	TCATGA	3 cut(s)	756, 1195, 1239
PceI	AGGCCT	1 cut(s)	792
PciI	ACATGT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	1208
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	4 cut(s)	235, 1069, 1199, 1243
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	5 cut(s)	154, 157, 253, 493, 496
PleI	GAGTC	1 cut(s)	1221
PpsI	GAGTC	1 cut(s)	1221
PscI	ACATGT	1 cut(s)	846
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	238, 1246
PspFI	CCCAGC	2 cut(s)	1055, 1139
PspGI	CCWGG	2 cut(s)	238, 1246
PspN4I	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
PspPI	GGNCC	3 cut(s)	303, 331, 447
PstI	CTGCAG	2 cut(s)	157, 499
PsuI	RGATCY	2 cut(s)	1187, 1204
PvuII	CAGCTG	2 cut(s)	494, 1127
RsaI	GTAC	2 cut(s)	482, 1132
RsaNI	GTAC	2 cut(s)	481, 1131
RseI	CAYNNNNRTG	2 cut(s)	851, 911
SaqAI	TTAA	5 cut(s)	30, 308, 345, 596, 890
SatI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
Sau3AI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
Sau96I	GGNCC	3 cut(s)	303, 331, 447
SchI	GAGTC	1 cut(s)	1222
ScrFI	CCNGG	2 cut(s)	240, 1248
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	2 cut(s)	153, 495
SinI	GGWCC	3 cut(s)	303, 331, 447
SmiMI	CAYNNNNRTG	2 cut(s)	851, 911
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	59
SspMI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	238, 1246
StyI	CCWWGG	3 cut(s)	484, 677, 1088
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	137, 1211
TfiI	GAWTC	4 cut(s)	235, 1069, 1199, 1243
Tru1I	TTAA	5 cut(s)	30, 308, 345, 596, 890
Tru9I	TTAA	5 cut(s)	30, 308, 345, 596, 890
TscAI	CASTG	4 cut(s)	591, 984, 1071, 1168
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	5 cut(s)	152, 155, 251, 491, 494
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	9 cut(s)	24, 85, 288, 382, 776, 841, 940, 1011, 1228
TspRI	CASTG	4 cut(s)	591, 984, 1071, 1168
VpaK11BI	GGWCC	3 cut(s)	303, 331, 447
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	2 cut(s)	672, 986
XbaI	TCTAGA	1 cut(s)	1184
XceI	RCATGY	2 cut(s)	108, 850
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.