Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027876.1

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Reverse (-)

1006 .. 2247

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgattgtaactctaactttcatcagcacatgcatttgctacatagaacgtgtaggattttcgattgcatacaccgctgcagcagatgcttccggtataagtcaatcaaacaaaggcaccattctctctacattctattatggctatgcctgttcacaaattcctggaggttgggctgctcaaaagtttggaggaaggtctgttctcctcatctcatttgtttcatggtccttaacatatgcttttgtccctctggaccctaaaaatgttaaaactatggttttggctcggttgcttgttggtgtggcacaggggttcatgttcccttccatccactctgttctcgctcaatgggttccacaaaatgagaggtccagatcagtttccctcacaacttctgggatgtaccttggtgcagctgcaggtatgcttgtggttccaaccctagtgaagttgacaagcccccaatttgtgtttttgggtgaagcaactttagggactatttggtcagtgctttggttaaactatgctagtgaaccaccaattcaattgtctaagcaaaatggagcatttcctaattctactagaaaaaccaaaattccatggaagagtatttttagaagcttacctatttgggctattgtggtgaacaatttcactttccactatgctttgtatgtcatgatgaattggcttccaacatactttgaacaaggcctgaaacttagtctccaagaaatggggacttacaaaatggtgccttatttcaacatgttcatgttctcaaacattggtggatttgtagctgattatttaatcacaaagaggctcatgtctgtgactagaactagaaagttcttgaacactttagggttcatggttgcttctattgcattgatggcactgcccaaattcagaacttcaattggggctgtgatttgttcttcatttgcacttgggtttttggctttaggcagagctgggtttgcagtgaatcacatggacattgctccaaggtatgcaggaattgtgatgggtgtgtctaacacagctggtacattagctgggataattggggtagatctcactgggaaacttttagaagcttctagatctgctcatgattcggatctttcgagtccagaaagctggacatcagttttcatgattcctggggtgctttgcattttcagctcaatctggtttttgatcttctcgactggggagaggatttttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

413

Amino Acids

45.32

Weight (kDa)

9.56

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	116, 757
AccB7I	CCANNNNNTGG	1 cut(s)	739
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	1137
AcsI	RAATTY	3 cut(s)	159, 597, 911
AfaI	GTAC	2 cut(s)	407, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	739
AflIII	ACRYGT	2 cut(s)	49, 771
AgsI	TTSAA	5 cut(s)	548, 710, 769, 862, 924
AjnI	CCWGG	2 cut(s)	163, 1171
AloI	GAACNNNNNNTCC	2 cut(s)	186, 218
AluBI	AGCT	9 cut(s)	419, 624, 806, 980, 1052, 1064, 1106, 1149, 1194
AluI	AGCT	9 cut(s)	419, 624, 806, 980, 1052, 1064, 1106, 1149, 1194
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	1 cut(s)	1137
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	5 cut(s)	77, 80, 176, 416, 419
ApoI	RAATTY	3 cut(s)	159, 597, 911
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	228, 256, 372
AsuHPI	GGTGA	2 cut(s)	494, 658
AvaII	GGWCC	3 cut(s)	228, 256, 372
BanI	GGYRCC	2 cut(s)	116, 757
BbvI	GCAGC	5 cut(s)	64, 92, 163, 406, 428
BccI	CCATC	3 cut(s)	338, 892, 1027
BciT130I	CCWGG	2 cut(s)	165, 1173
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	6 cut(s)	446, 531, 585, 843, 849, 1110
BfmI	CTRYAG	2 cut(s)	78, 420
BfuAI	ACCTGC	1 cut(s)	413
BglII	AGATCT	2 cut(s)	1081, 1112
BisI	GCNGC	5 cut(s)	78, 81, 177, 417, 420
BlsI	GCNGC	5 cut(s)	79, 82, 178, 418, 421
Bme1390I	CCNGG	2 cut(s)	165, 1173
Bme18I	GGWCC	3 cut(s)	228, 256, 372
BmgT120I	GGNCC	3 cut(s)	228, 256, 372
BmiI	GGNNCC	5 cut(s)	118, 258, 357, 438, 759
BmrFI	CCNGG	2 cut(s)	165, 1173
BmrI	ACTGGG	2 cut(s)	1098, 1230
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	2 cut(s)	1098, 1230
BpmI	CTGGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	1128
BsaJI	CCNNGG	4 cut(s)	409, 602, 1013, 1172
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse1I	ACTGG	2 cut(s)	1093, 1225
Bse3DI	GCAATG	1 cut(s)	1005
Bse8I	GATNNNNATC	1 cut(s)	1128
BseBI	CCWGG	2 cut(s)	165, 1173
BseDI	CCNNGG	4 cut(s)	409, 602, 1013, 1172
BseGI	GGATG	2 cut(s)	330, 408
BseJI	GATNNNNATC	1 cut(s)	1128
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	1 cut(s)	1005
BseNI	ACTGG	2 cut(s)	1093, 1225
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	5 cut(s)	64, 92, 163, 406, 428
BseYI	CCCAGC	2 cut(s)	980, 1064
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	717
BshNI	GGYRCC	2 cut(s)	116, 757
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	3 cut(s)	233, 511, 757
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	3 cut(s)	233, 511, 757
BsnI	GGCC	1 cut(s)	717
Bsp143I	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	717
BspHI	TCATGA	3 cut(s)	681, 1120, 1164
BspLI	GGNNCC	5 cut(s)	118, 258, 357, 438, 759
BspMAI	CTGCAG	2 cut(s)	82, 424
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	1137
BspT107I	GGYRCC	2 cut(s)	116, 757
BsrDI	GCAATG	1 cut(s)	1005
BsrI	ACTGG	2 cut(s)	1093, 1225
BssECI	CCNNGG	4 cut(s)	409, 602, 1013, 1172
BssMI	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
BssT1I	CCWWGG	3 cut(s)	409, 602, 1013
Bst2UI	CCWGG	2 cut(s)	165, 1173
Bst6I	CTCTTC	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	555, 725
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	330, 408
BstKTI	GATC	5 cut(s)	380, 1084, 1115, 1132, 1212
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 86, 890, 899, 986, 1191
BstNI	CCWGG	2 cut(s)	165, 1173
BstNSI	RCATGY	2 cut(s)	33, 775
BstSCI	CCNGG	2 cut(s)	163, 1171
BstSFI	CTRYAG	2 cut(s)	78, 420
BstV1I	GCAGC	5 cut(s)	64, 92, 163, 406, 428
BstX2I	RGATCY	3 cut(s)	1081, 1112, 1129
BstXI	CCANNNNNNTGG	1 cut(s)	1149
BstYI	RGATCY	3 cut(s)	1081, 1112, 1129
BsuRI	GGCC	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	330, 408
BtsI	GCAGTG	2 cut(s)	902, 996
BtsIMutI	CAGTG	4 cut(s)	516, 902, 996, 1086
BveI	ACCTGC	1 cut(s)	413
CciI	TCATGA	3 cut(s)	681, 1120, 1164
Cfr13I	GGNCC	3 cut(s)	228, 256, 372
Csp6I	GTAC	2 cut(s)	406, 1056
CviQI	GTAC	2 cut(s)	406, 1056
DdeI	CTNAG	2 cut(s)	555, 725
DpnI	GATC	5 cut(s)	379, 1083, 1114, 1131, 1211
DpnII	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	3 cut(s)	409, 602, 1013
Eco147I	AGGCCT	1 cut(s)	717
Eco47I	GGWCC	3 cut(s)	228, 256, 372
EcoRII	CCWGG	2 cut(s)	163, 1171
EcoT14I	CCWWGG	3 cut(s)	409, 602, 1013
EcoT22I	ATGCAT	1 cut(s)	35
ErhI	CCWWGG	3 cut(s)	409, 602, 1013
FaqI	GGGAC	3 cut(s)	233, 511, 757
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	78, 81, 177, 417, 420
FokI	GGATG	2 cut(s)	317, 415
Fsp4HI	GCNGC	5 cut(s)	78, 81, 177, 417, 420
FspBI	CTAG	6 cut(s)	446, 531, 585, 843, 849, 1110
GluI	GCNGC	5 cut(s)	78, 81, 177, 417, 420
GsaI	CCCAGC	2 cut(s)	984, 1068
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	717
HapII	CCGG	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	2 cut(s)	622, 1104
HinfI	GANTC	4 cut(s)	994, 1124, 1138, 1168
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	494, 658
Hpy166II	GTNNAC	4 cut(s)	155, 456, 536, 649
Hpy188I	TCNGA	2 cut(s)	917, 1129
Hpy188III	TCNNGA	9 cut(s)	254, 375, 682, 859, 1110, 1121, 1142, 1165, 1216
Hpy8I	GTNNAC	4 cut(s)	155, 456, 536, 649
HpyAV	CCTTC	2 cut(s)	189, 336
HpyCH4IV	ACGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 86, 890, 899, 986, 1191
HpyF3I	CTNAG	2 cut(s)	555, 725
HpySE526I	ACGT	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
LmnI	GCTCC	2 cut(s)	566, 1015
Lsp1109I	GCAGC	5 cut(s)	64, 92, 163, 406, 428
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	6 cut(s)	446, 531, 585, 843, 849, 1110
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	7, 838
MalI	GATC	5 cut(s)	379, 1083, 1114, 1131, 1211
MboI	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
MboII	GAAGA	3 cut(s)	619, 936, 1204
MfeI	CAATTG	2 cut(s)	548, 924
MflI	RGATCY	3 cut(s)	1081, 1112, 1129
MlyI	GAGTC	1 cut(s)	1147
MmeI	TCCRAC	2 cut(s)	464, 722
MnlI	CCTC	8 cut(s)	161, 185, 218, 261, 363, 398, 819, 1221
Mph1103I	ATGCAT	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	4 cut(s)	233, 270, 521, 815
MslI	CAYNNNNRTG	2 cut(s)	776, 836
MspA1I	CMGCKG	3 cut(s)	77, 419, 1052
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	165, 1173
MunI	CAATTG	2 cut(s)	548, 924
MvaI	CCWGG	2 cut(s)	165, 1173
MwoI	GCNNNNNNNGC	6 cut(s)	74, 86, 890, 899, 986, 1191
NcoI	CCATGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
NlaIV	GGNNCC	5 cut(s)	118, 258, 357, 438, 759
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	2 cut(s)	33, 775
PagI	TCATGA	3 cut(s)	681, 1120, 1164
PceI	AGGCCT	1 cut(s)	717
PciI	ACATGT	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	1133
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	994, 1124, 1168
PflMI	CCANNNNNTGG	1 cut(s)	739
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	79, 82, 178, 418, 421
PleI	GAGTC	1 cut(s)	1146
PpsI	GAGTC	1 cut(s)	1146
PscI	ACATGT	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	163, 1171
PspFI	CCCAGC	2 cut(s)	980, 1064
PspGI	CCWGG	2 cut(s)	163, 1171
PspN4I	GGNNCC	5 cut(s)	118, 258, 357, 438, 759
PspPI	GGNCC	3 cut(s)	228, 256, 372
PstI	CTGCAG	2 cut(s)	82, 424
PsuI	RGATCY	3 cut(s)	1081, 1112, 1129
PvuII	CAGCTG	2 cut(s)	419, 1052
RsaI	GTAC	2 cut(s)	407, 1057
RsaNI	GTAC	2 cut(s)	406, 1056
RseI	CAYNNNNRTG	2 cut(s)	776, 836
SaqAI	TTAA	4 cut(s)	233, 270, 521, 815
SatI	GCNGC	5 cut(s)	78, 81, 177, 417, 420
Sau3AI	GATC	5 cut(s)	377, 1081, 1112, 1129, 1209
Sau96I	GGNCC	3 cut(s)	228, 256, 372
SchI	GAGTC	1 cut(s)	1147
ScrFI	CCNGG	2 cut(s)	165, 1173
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	78, 420
SinI	GGWCC	3 cut(s)	228, 256, 372
SmiMI	CAYNNNNRTG	2 cut(s)	776, 836
SseBI	AGGCCT	1 cut(s)	717
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	6 cut(s)	446, 531, 585, 843, 849, 1110
StuI	AGGCCT	1 cut(s)	717
StyD4I	CCNGG	2 cut(s)	163, 1171
StyI	CCWWGG	3 cut(s)	409, 602, 1013
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	62, 1136, 1217
TfiI	GAWTC	3 cut(s)	994, 1124, 1168
Tru1I	TTAA	4 cut(s)	233, 270, 521, 815
Tru9I	TTAA	4 cut(s)	233, 270, 521, 815
TscAI	CASTG	4 cut(s)	516, 909, 996, 1093
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	5 cut(s)	77, 80, 176, 416, 419
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	8 cut(s)	10, 213, 307, 701, 766, 865, 936, 1153
TspRI	CASTG	4 cut(s)	516, 909, 996, 1093
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	3 cut(s)	228, 256, 372
XapI	RAATTY	3 cut(s)	159, 597, 911
XbaI	TCTAGA	1 cut(s)	1109
XceI	RCATGY	2 cut(s)	33, 775
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	6 cut(s)	446, 531, 585, 843, 849, 1110
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.