Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Forward (+)

42963649 .. 42964919

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTTGATAAAATATTTTCCCAAGCGTTACATGATTGTAACTCTAACTTTCATCAGCACATGCATTTGCTACATAGAACGTGTAGGATTTTCGATTGCATACACCGCTGCAGCAGATGCTTCCGGTATAAGTCAATCAAACAAAGGCACCATTCTCTCTACATTCTATTATGGCTATGCCTGTTCACAAATTCCTGGAGGTTGGGCTGCTCAAAAGTTTGGAGGAAGGTCTGTTCTCCTCATCTCATTTGTTTCATGGTCCTTAACATATGCTTTTGTCCCTCTGGACCCTAAAAATGGGTTCATGTTCCCTTCCATCCACTCTGTTCTCGCTCAATGGGTTCCACAAAATGAGAGGTCCAGATCAGTTTCCCTCACAACTTCTGGGATGTACCTTGGTGCAGCTGCAGGTATGCTTGTGGTTCCAACCCTAGTGAAGTTGACAAGCCCCCAATTTGTGTTTTTGGGTGAAGCAACTTTAGGGACTATTTGGTCAGTGCTTTGGTTAAACTATGCTAGTGAACCACCAATTCAATTGTCTAAGCAAAATGGAGCATTTCCCAATTCTACTAGAAAAACCAAAATTCCATGGAAGAGTATTTTTAGAAGCTTACCTATTTGGGCTATTGTGGTGAACAATTTCACTTTCCACTATGCTTTGTATGTCATGATGAATTGGCTTCCAACATACTTTGAACAAGGCCTGAAGCTTAGTCTTCAAGAAATGGGGACTTACAAAATGGTGCCTTATTTCAACATGTTCATGTTCTCAAACATTGGTGGATTTGTAGCTGATTATTTAATCACAAAGAGGCTCATGTCTGTGACTAGAACTAGAAAGTTCTTGAACACTTTAGGGTTGATGGTTGCTTCTATTGCATTGATGGCACTGCCCAAATTCAGAACTTCAATTGGGGCTGTGATTTGTTCTTCATTTGCACTTGGGTTTTTGGCTTTAGGCAGAGCTGGGTTTGCAGTGAATCACATGGACATTGCTCCAAGGTATGCAGGAATTGTGATGGGTGTGTCTAACACAGCTGGTACATTAGCTGGGATAATTGGGGTTGATCTCACTGGGAAACTTTTAGAAACTTCTAGATCTGCTCATGATTCGGATCTTTCGAGTCCAGAAAGCTGGACATCAGTTTTCATGATTCCTGGGGTGCTTTGCATTTTCAGCTCAATCTGGTTTTTGATCTTCTCGACTGGGGAGAGGATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

408

Amino Acids

45.08

Weight (kDa)

9.57

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	17 - 354	3.4e-38	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	398
AccB1I	GGYRCC	2 cut(s)	146, 742
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	1122
AcsI	RAATTY	3 cut(s)	189, 582, 896
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	2 cut(s)	392, 1042
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	2 cut(s)	79, 756
AgsI	TTSAA	6 cut(s)	533, 695, 719, 754, 847, 909
AjnI	CCWGG	2 cut(s)	193, 1156
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	9 cut(s)	404, 609, 709, 791, 965, 1037, 1049, 1134, 1179
AluI	AGCT	9 cut(s)	404, 609, 709, 791, 965, 1037, 1049, 1134, 1179
AlwI	GGATC	1 cut(s)	1122
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	5 cut(s)	107, 110, 206, 401, 404
ApoI	RAATTY	3 cut(s)	189, 582, 896
Asp700I	GAANNNNTTC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	258, 286, 357
AsuHPI	GGTGA	2 cut(s)	479, 643
AvaII	GGWCC	3 cut(s)	258, 286, 357
BanI	GGYRCC	2 cut(s)	146, 742
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	5 cut(s)	94, 122, 193, 391, 413
BccI	CCATC	4 cut(s)	323, 856, 877, 1012
BciT130I	CCWGG	2 cut(s)	195, 1158
BfaI	CTAG	6 cut(s)	431, 516, 570, 828, 834, 1095
BfmI	CTRYAG	2 cut(s)	108, 405
BfuAI	ACCTGC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	1097
BisI	GCNGC	5 cut(s)	108, 111, 207, 402, 405
BlsI	GCNGC	5 cut(s)	109, 112, 208, 403, 406
Bme1390I	CCNGG	2 cut(s)	195, 1158
Bme18I	GGWCC	3 cut(s)	258, 286, 357
BmgT120I	GGNCC	3 cut(s)	258, 286, 357
BmiI	GGNNCC	5 cut(s)	148, 288, 342, 423, 744
BmrFI	CCNGG	2 cut(s)	195, 1158
BmrI	ACTGGG	2 cut(s)	1083, 1215
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	2 cut(s)	1083, 1215
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	1113
BsaJI	CCNNGG	4 cut(s)	394, 587, 998, 1157
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	1078, 1210
Bse3DI	GCAATG	1 cut(s)	990
Bse8I	GATNNNNATC	1 cut(s)	1113
BseBI	CCWGG	2 cut(s)	195, 1158
BseDI	CCNNGG	4 cut(s)	394, 587, 998, 1157
BseGI	GGATG	2 cut(s)	315, 393
BseJI	GATNNNNATC	1 cut(s)	1113
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	990
BseNI	ACTGG	2 cut(s)	1078, 1210
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	5 cut(s)	94, 122, 193, 391, 413
BseYI	CCCAGC	2 cut(s)	965, 1049
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	702
BshNI	GGYRCC	2 cut(s)	146, 742
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	3 cut(s)	263, 496, 742
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	3 cut(s)	263, 496, 742
BsnI	GGCC	1 cut(s)	702
Bsp143I	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	702
BspHI	TCATGA	3 cut(s)	666, 1105, 1149
BspLI	GGNNCC	5 cut(s)	148, 288, 342, 423, 744
BspMAI	CTGCAG	2 cut(s)	112, 409
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	1122
BspT107I	GGYRCC	2 cut(s)	146, 742
BsrDI	GCAATG	1 cut(s)	990
BsrI	ACTGG	2 cut(s)	1078, 1210
BssECI	CCNNGG	4 cut(s)	394, 587, 998, 1157
BssMI	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
BssT1I	CCWWGG	3 cut(s)	394, 587, 998
Bst2UI	CCWGG	2 cut(s)	195, 1158
Bst6I	CTCTTC	1 cut(s)	587
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	540, 710
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	315, 393
BstKTI	GATC	5 cut(s)	365, 1069, 1100, 1117, 1197
BstMBI	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 116, 875, 884, 971, 1176
BstNI	CCWGG	2 cut(s)	195, 1158
BstNSI	RCATGY	2 cut(s)	63, 760
BstSCI	CCNGG	2 cut(s)	193, 1156
BstSFI	CTRYAG	2 cut(s)	108, 405
BstV1I	GCAGC	5 cut(s)	94, 122, 193, 391, 413
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	2 cut(s)	1097, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	1134
BstYI	RGATCY	2 cut(s)	1097, 1114
BsuRI	GGCC	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	315, 393
BtsI	GCAGTG	2 cut(s)	887, 981
BtsIMutI	CAGTG	4 cut(s)	501, 887, 981, 1071
BveI	ACCTGC	1 cut(s)	398
CciI	TCATGA	3 cut(s)	666, 1105, 1149
Cfr13I	GGNCC	3 cut(s)	258, 286, 357
Csp6I	GTAC	2 cut(s)	391, 1041
CviQI	GTAC	2 cut(s)	391, 1041
DdeI	CTNAG	2 cut(s)	540, 710
DpnI	GATC	5 cut(s)	364, 1068, 1099, 1116, 1196
DpnII	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
DrdI	GACNNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Eco130I	CCWWGG	3 cut(s)	394, 587, 998
Eco147I	AGGCCT	1 cut(s)	702
Eco47I	GGWCC	3 cut(s)	258, 286, 357
Eco57I	CTGAAG	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	193, 1156
EcoT14I	CCWWGG	3 cut(s)	394, 587, 998
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	3 cut(s)	394, 587, 998
FaqI	GGGAC	3 cut(s)	263, 496, 742
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	108, 111, 207, 402, 405
FokI	GGATG	2 cut(s)	302, 400
Fsp4HI	GCNGC	5 cut(s)	108, 111, 207, 402, 405
FspBI	CTAG	6 cut(s)	431, 516, 570, 828, 834, 1095
GluI	GCNGC	5 cut(s)	108, 111, 207, 402, 405
GsaI	CCCAGC	2 cut(s)	969, 1053
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	2 cut(s)	607, 707
HinfI	GANTC	4 cut(s)	979, 1109, 1123, 1153
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	479, 643
Hpy166II	GTNNAC	4 cut(s)	185, 441, 521, 634
Hpy188I	TCNGA	2 cut(s)	902, 1114
Hpy8I	GTNNAC	4 cut(s)	185, 441, 521, 634
HpyAV	CCTTC	2 cut(s)	219, 321
HpyCH4IV	ACGT	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 116, 875, 884, 971, 1176
HpyF3I	CTNAG	2 cut(s)	540, 710
HpySE526I	ACGT	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
LmnI	GCTCC	2 cut(s)	551, 1000
Lsp1109I	GCAGC	5 cut(s)	94, 122, 193, 391, 413
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	6 cut(s)	431, 516, 570, 828, 834, 1095
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	3 cut(s)	26, 37, 823
MalI	GATC	5 cut(s)	364, 1068, 1099, 1116, 1196
MboI	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
MboII	GAAGA	4 cut(s)	604, 707, 921, 1189
MfeI	CAATTG	2 cut(s)	533, 909
MflI	RGATCY	2 cut(s)	1097, 1114
MlyI	GAGTC	1 cut(s)	1132
MmeI	TCCRAC	2 cut(s)	449, 707
MnlI	CCTC	8 cut(s)	191, 215, 248, 291, 348, 383, 804, 1206
Mph1103I	ATGCAT	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	3 cut(s)	263, 506, 800
MslI	CAYNNNNRTG	2 cut(s)	761, 821
MspA1I	CMGCKG	3 cut(s)	107, 404, 1037
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	195, 1158
MunI	CAATTG	2 cut(s)	533, 909
MvaI	CCWGG	2 cut(s)	195, 1158
MwoI	GCNNNNNNNGC	6 cut(s)	104, 116, 875, 884, 971, 1176
NcoI	CCATGG	1 cut(s)	587
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
NlaIV	GGNNCC	5 cut(s)	148, 288, 342, 423, 744
NmuCI	GTSAC	1 cut(s)	823
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	2 cut(s)	63, 760
PagI	TCATGA	3 cut(s)	666, 1105, 1149
PceI	AGGCCT	1 cut(s)	702
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	979, 1109, 1153
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	5 cut(s)	109, 112, 208, 403, 406
PleI	GAGTC	1 cut(s)	1131
PpsI	GAGTC	1 cut(s)	1131
PscI	ACATGT	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	193, 1156
PspFI	CCCAGC	2 cut(s)	965, 1049
PspGI	CCWGG	2 cut(s)	193, 1156
PspN4I	GGNNCC	5 cut(s)	148, 288, 342, 423, 744
PspPI	GGNCC	3 cut(s)	258, 286, 357
PstI	CTGCAG	2 cut(s)	112, 409
PsuI	RGATCY	2 cut(s)	1097, 1114
PvuII	CAGCTG	2 cut(s)	404, 1037
RsaI	GTAC	2 cut(s)	392, 1042
RsaNI	GTAC	2 cut(s)	391, 1041
RseI	CAYNNNNRTG	2 cut(s)	761, 821
SaqAI	TTAA	3 cut(s)	263, 506, 800
SatI	GCNGC	5 cut(s)	108, 111, 207, 402, 405
Sau3AI	GATC	5 cut(s)	362, 1066, 1097, 1114, 1194
Sau96I	GGNCC	3 cut(s)	258, 286, 357
SchI	GAGTC	1 cut(s)	1132
ScrFI	CCNGG	2 cut(s)	195, 1158
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	2 cut(s)	108, 405
SinI	GGWCC	3 cut(s)	258, 286, 357
SmiMI	CAYNNNNRTG	2 cut(s)	761, 821
SseBI	AGGCCT	1 cut(s)	702
SsiI	CCGC	1 cut(s)	105
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	6 cut(s)	431, 516, 570, 828, 834, 1095
StuI	AGGCCT	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	193, 1156
StyI	CCWWGG	3 cut(s)	394, 587, 998
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	92, 1121, 1202
TfiI	GAWTC	3 cut(s)	979, 1109, 1153
Tru1I	TTAA	3 cut(s)	263, 506, 800
Tru9I	TTAA	3 cut(s)	263, 506, 800
TscAI	CASTG	4 cut(s)	501, 894, 981, 1078
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	5 cut(s)	107, 110, 206, 401, 404
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	7 cut(s)	40, 243, 292, 686, 751, 921, 1138
TspRI	CASTG	4 cut(s)	501, 894, 981, 1078
VpaK11BI	GGWCC	3 cut(s)	258, 286, 357
XapI	RAATTY	3 cut(s)	189, 582, 896
XbaI	TCTAGA	1 cut(s)	1094
XceI	RCATGY	2 cut(s)	63, 760
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	6 cut(s)	431, 516, 570, 828, 834, 1095
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.