Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Forward (+)

19324921 .. 19326542

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTGACAGTCGTCGCCAAATCTCACCGGAAACTAGAGATCGAAGTGCACGGATTCAACAACGGTGGACCCGGTCGGATTTTTTTATTTTGGCTGCTGCTGAGCTCAAAACTGGTCACGTTGTTACGCTCTATTCCTCCTGATCACAGCCATACAAGCCTTGAAGCTCGATTCGAAGTCGCCACCCTCCGAACCCAGTCTTTCAAGGAAGACACCTACTTCGTCTCCAGTCTCAAGTCATTGGAGAAGAAGGCGCTCCAGGACCTCAAGGACAAGCTCATTGCCTCTGACTCCTGCGATGGGGCCATGTGGGGTGTCAAATTGCTCCCCAGAGACGACAAAGATGACGTCATCCTCCTCAAGTTTCTCCGAGCCTTGGATTTTCGAGTTGCTGACACTTTCAACATGATAGTCAAGTGCCTGGGGTGGAGGAAGGAGTTCGGAGTAGACGAGGTTGCTGAGGAGGACTTGGGATTTAAGGAGCTCGAAGGTGTTGTTTCTTACATGCACGGATTTGATAGGTGCGAACACCCTATTTGTTATAATGCTTATGGAGTGTTCAAGGACAAGGACATGTATGAGAGGATTTTCGGGGACAAGGAGAAGCTCAAGAAGTTCTTGAGATGGAGAGTTCAGGTCCTTGAAAAGGGTATCAATGTCTTGCATTTTAAGCCAGGAAGGATCAACTCCATCATCCAAGTCACTGATCTCAAGGACATGCCCAAAAGAGAGCTCAGGGTTGCTTCAAATCAGATCATTTCGCTATTTCAGGACAACTACCCAGAAATGGTGTCCAAAAGGGTAGTGAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

271

Amino Acids

31.32

Weight (kDa)

8.73

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	85 - 139	3.3e-09	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	163 - 266	1.9e-10	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AatII	GACGTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	300, 376, 646, 787
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	7 cut(s)	58, 164, 205, 403, 562, 644, 747
AjnI	CCWGG	3 cut(s)	258, 420, 673
AluBI	AGCT	6 cut(s)	105, 167, 277, 484, 607, 733
AluI	AGCT	6 cut(s)	105, 167, 277, 484, 607, 733
Alw21I	GWGCWC	4 cut(s)	51, 107, 486, 735
Alw26I	GTCTC	3 cut(s)	229, 236, 327
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	689
AoxI	GGCC	1 cut(s)	303
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	94, 97
ArsI	GACNNNNNNTTYG	4 cut(s)	203, 235, 333, 365
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	68, 262, 303, 637
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	16, 17
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	3 cut(s)	68, 262, 637
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	3 cut(s)	107, 486, 735
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	4 cut(s)	51, 107, 486, 735
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	81, 84
BccI	CCATC	3 cut(s)	293, 618, 698
BciT130I	CCWGG	3 cut(s)	260, 422, 675
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	3 cut(s)	229, 236, 327
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	2 cut(s)	95, 98
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	2 cut(s)	96, 99
Bme1390I	CCNGG	4 cut(s)	72, 260, 422, 675
Bme18I	GGWCC	3 cut(s)	68, 262, 637
BmgT120I	GGNCC	4 cut(s)	68, 262, 303, 637
BmiI	GGNNCC	2 cut(s)	70, 304
BmrFI	CCNGG	4 cut(s)	72, 260, 422, 675
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	2 cut(s)	211, 242
Bpu10I	CCTNAGC	2 cut(s)	459, 734
Bpu1102I	GCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	6 cut(s)	218, 251, 344, 593, 640, 695
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	375, 421
BsaWI	WCCGGW	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	4 cut(s)	300, 376, 646, 787
Bse1I	ACTGG	3 cut(s)	117, 196, 228
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	3 cut(s)	260, 422, 675
BseDI	CCNNGG	2 cut(s)	375, 421
BseGI	GGATG	2 cut(s)	351, 693
BseLI	CCNNNNNNNGG	4 cut(s)	300, 376, 646, 787
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	92, 450, 748
BseNI	ACTGG	3 cut(s)	117, 196, 228
BseRI	GAGGAG	2 cut(s)	347, 476
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	81, 84
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	4 cut(s)	51, 107, 486, 735
BsiSI	CCGG	2 cut(s)	28, 72
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	4 cut(s)	300, 376, 646, 787
BsmAI	GTCTC	3 cut(s)	229, 236, 327
BsmBI	CGTCTC	2 cut(s)	229, 327
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	4 cut(s)	51, 107, 486, 735
Bsp143I	GATC	5 cut(s)	39, 142, 681, 706, 753
Bsp1720I	GCTNAGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	3 cut(s)	93, 451, 747
BspLI	GGNNCC	2 cut(s)	70, 304
BspPI	GGATC	1 cut(s)	689
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	117, 196, 228
BssECI	CCNNGG	2 cut(s)	375, 421
BssMI	GATC	5 cut(s)	39, 142, 681, 706, 753
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	260, 422, 675
Bst4CI	ACNGT	2 cut(s)	10, 65
BstACI	GRCGYC	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	101, 459, 734
BstENI	CCTNNNNNAGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	351, 693
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	5 cut(s)	42, 145, 684, 709, 756
BstMAI	GTCTC	3 cut(s)	229, 236, 327
BstMBI	GATC	5 cut(s)	39, 142, 681, 706, 753
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 670
BstNI	CCWGG	3 cut(s)	260, 422, 675
BstNSI	RCATGY	3 cut(s)	508, 577, 721
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	4 cut(s)	70, 258, 420, 673
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	81, 84
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	351, 693
BtsIMutI	CAGTG	1 cut(s)	702
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	4 cut(s)	68, 262, 303, 637
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	5 cut(s)	307, 406, 505, 574, 718
DdeI	CTNAG	3 cut(s)	101, 459, 734
DpnI	GATC	5 cut(s)	41, 144, 683, 708, 755
DpnII	GATC	5 cut(s)	39, 142, 681, 706, 753
Ecl136II	GAGCTC	3 cut(s)	105, 484, 733
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	3 cut(s)	107, 486, 735
Eco47I	GGWCC	3 cut(s)	68, 262, 637
Eco53kI	GAGCTC	3 cut(s)	105, 484, 733
EcoICRI	GAGCTC	3 cut(s)	105, 484, 733
EcoNI	CCTNNNNNAGG	1 cut(s)	644
EcoO109I	RGGNCCY	2 cut(s)	262, 637
EcoRII	CCWGG	3 cut(s)	258, 420, 673
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	3 cut(s)	107, 486, 735
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	229, 327
FaeI	CATG	5 cut(s)	310, 409, 508, 577, 721
FaiI	YATR	9 cut(s)	153, 308, 407, 506, 543, 552, 575, 579, 719
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	5 cut(s)	306, 405, 504, 573, 717
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	95, 98
FokI	GGATG	2 cut(s)	338, 680
FriOI	GRGCYC	3 cut(s)	107, 486, 735
Fsp4HI	GCNGC	2 cut(s)	95, 98
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	95, 98
GsuI	CTGGAG	2 cut(s)	211, 242
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	28, 72
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	310, 409, 508, 577, 721
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	54, 171, 290
HpaII	CCGG	2 cut(s)	28, 72
HphI	GGTGA	2 cut(s)	16, 17
Hpy166II	GTNNAC	4 cut(s)	49, 68, 448, 808
Hpy188I	TCNGA	6 cut(s)	78, 191, 289, 371, 443, 753
Hpy188III	TCNNGA	5 cut(s)	140, 610, 619, 770, 813
Hpy8I	GTNNAC	4 cut(s)	49, 68, 448, 808
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	244, 427, 482, 672
HpyCH4III	ACNGT	2 cut(s)	10, 65
HpyCH4IV	ACGT	2 cut(s)	119, 348
HpyCH4V	TGCA	3 cut(s)	49, 508, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 670
HpyF3I	CTNAG	3 cut(s)	101, 459, 734
HpySE526I	ACGT	2 cut(s)	119, 348
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	5 cut(s)	310, 409, 508, 577, 721
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	39, 142, 681, 706, 753
LmnI	GCTCC	3 cut(s)	261, 330, 481
Lsp1109I	GCAGC	2 cut(s)	81, 84
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	119, 348
MaeIII	GTNAC	4 cut(s)	4, 115, 123, 700
MalI	GATC	5 cut(s)	41, 144, 683, 708, 755
MboI	GATC	5 cut(s)	39, 142, 681, 706, 753
MboII	GAAGA	2 cut(s)	221, 259
MhlI	GDGCHC	4 cut(s)	51, 107, 486, 735
MluCI	AATT	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	477, 669
MspI	CCGG	2 cut(s)	28, 72
MspR9I	CCNGG	4 cut(s)	72, 260, 422, 675
MvaI	CCWGG	3 cut(s)	260, 422, 675
MwoI	GCNNNNNNNGC	2 cut(s)	156, 670
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	39, 142, 681, 706, 753
NlaIII	CATG	5 cut(s)	310, 409, 508, 577, 721
NlaIV	GGNNCC	2 cut(s)	70, 304
NmuCI	GTSAC	3 cut(s)	4, 115, 700
NspI	RCATGY	3 cut(s)	508, 577, 721
NspV	TTCGAA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	54, 171
PflFI	GACNNNGTC	1 cut(s)	72
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	96, 99
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PpuMI	RGGWCCY	2 cut(s)	262, 637
PscI	ACATGT	1 cut(s)	573
PshAI	GACNNNNGTC	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	543
Psp124BI	GAGCTC	3 cut(s)	107, 486, 735
Psp5II	RGGWCCY	2 cut(s)	262, 637
Psp6I	CCWGG	3 cut(s)	258, 420, 673
PspGI	CCWGG	3 cut(s)	258, 420, 673
PspN4I	GGNNCC	2 cut(s)	70, 304
PspPI	GGNCC	4 cut(s)	68, 262, 303, 637
PspPPI	RGGWCCY	2 cut(s)	262, 637
PsyI	GACNNNGTC	1 cut(s)	72
SacI	GAGCTC	3 cut(s)	107, 486, 735
SaqAI	TTAA	2 cut(s)	477, 669
SatI	GCNGC	2 cut(s)	95, 98
Sau3AI	GATC	5 cut(s)	39, 142, 681, 706, 753
Sau96I	GGNCC	4 cut(s)	68, 262, 303, 637
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	4 cut(s)	72, 260, 422, 675
SduI	GDGCHC	4 cut(s)	51, 107, 486, 735
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	3 cut(s)	68, 262, 637
SmlI	CTYRAG	6 cut(s)	233, 266, 359, 608, 619, 710
SmoI	CTYRAG	6 cut(s)	233, 266, 359, 608, 619, 710
Sse9I	AATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	3 cut(s)	107, 486, 735
StyD4I	CCNGG	4 cut(s)	70, 258, 420, 673
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	10, 65
TaiI	ACGT	2 cut(s)	122, 351
TaqI	TCGA	5 cut(s)	42, 169, 174, 385, 486
TasI	AATT	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	54, 171
Tru1I	TTAA	2 cut(s)	477, 669
Tru9I	TTAA	2 cut(s)	477, 669
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	3 cut(s)	4, 115, 700
TseI	GCWGC	2 cut(s)	94, 97
Tsp45I	GTSAC	3 cut(s)	4, 115, 700
TspGWI	ACGGA	2 cut(s)	66, 525
TspRI	CASTG	1 cut(s)	709
Tth111I	GACNNNGTC	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	68, 262, 637
XagI	CCTNNNNNAGG	1 cut(s)	644
XceI	RCATGY	3 cut(s)	508, 577, 721
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.