Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Reverse (-)

46041222 .. 46044410

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G563500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGACGACAATGAAATTTCCAAAGCGTTACTTAGTCGTCATATTGACCTTCCTCAGCACATCCGTTTGCTATATAGAACGTGTCGGGTTTTCAATTGCATACACTGTTGCCGCTGATGCTGCTGGGGTAAATCAATCAAGTAAAGGCACAATTCTTTCTACATTCTATTATGGCTATGCTTGTTCACAAGTGCCTGGTGGCTGGGCAGCTCAGAAAATCGGGGGAAGGAAGGTTCTTCTCCTTTCATTTGTGTTATGGTCATTGACTTGTGCATTGGTTCCTTTGGACCCCAATCGAGTCTTTGTCATGGTGATTGCTAGATTGCTTGTTGGTGTTGCACAAGGTTTCATCTTCCCCTCAATCCACACAGTTCTAGCACAGTGGGTTCCACCACACGAAAGATCCAGATCTGTTTCTCTTACAACTTCTGGTATGTACCTCGGTGCTGCGGCAGGAATGCTTTTCCTTCCAAGCCTTGTAAAGTATAGAGGCCCCCAATCCGTCTTTCTTGCTGAGGCAGCACTAGGAGCCATGTGGTCTTTGCTTTGGTTTAAGTATGCCAGTGACCCACCTCGCTCTGAACATCCAAAAGCCACAGCTGCTGGTTTCGGGGAATCAATGCTGCCAATCAAAGGAAGTCAAAAGTTGAAACTAGAAAATGGAGGAAGTTCTGTCAGAACTGCCAAAATTCCATGGAAGAAAATTTTACTCAGTTTGCCAGTCTGGGCAATTGTGGTTAATAATTTCACGTTCCATTATGCTTTATATGTGTTAATGAACTGGCTGCCGACATACTTTGAATTGGGCCTCCAGCTTAGCCTTCAAGAAATGGGTTCTTCTAAGATGTTGCCGTATCTCAACATGTTTATTTTCTCAAATATAGGTGGGGTGGTTGCTGATCACTTGGTCACCAAGAGAATCTTGTCTGTGACTAGAACGCGGAAGCTCTTGAACACCATCGGGTTCATAGTTGCTTCTCTTGCATTGATGGCAATTCCCATATTCAGAACATCTGGTGGGGCTGTTCTCTGCTCTTCTGTGGCTCTCGGTTTCTTGGCACTTGGGAGAGCTGGTTTTGCAGTGAATCACATGGATATTGCCCCGAGATACGCGGGCATTGTGATGGGAGTTTCTAACACTGCTGGTACGTTAGCTGGCATTATTGGAGTTGATCTGACCGGCAAACTACTTGAAGCTGCAAGAACTGTTGATTCGAGTCTTTCAAGTGCAGAGAGCTGGAGAGTGGTGTTTTTCATTCCGGGTTTGCTTTGCATTTTTAGTTCTGTAGTATTTTTACTATTCTCAACAGGGGAGAGAATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

443

Amino Acids

47.89

Weight (kDa)

9.81

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	940, 1112
AciI	CCGC	4 cut(s)	111, 449, 940, 1112
AclWI	GGATC	1 cut(s)	396
AcsI	RAATTY	4 cut(s)	14, 687, 702, 1317
AfaI	GTAC	2 cut(s)	437, 1147
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflIII	ACRYGT	2 cut(s)	79, 861
AgsI	TTSAA	7 cut(s)	93, 649, 800, 824, 952, 1193, 1224
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	8 cut(s)	209, 599, 814, 946, 1070, 1154, 1196, 1236
AluI	AGCT	8 cut(s)	209, 599, 814, 946, 1070, 1154, 1196, 1236
AlwI	GGATC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	1102
AoxI	GGCC	2 cut(s)	490, 805
ApeKI	GCWGC	8 cut(s)	119, 206, 446, 518, 599, 622, 784, 1196
ApoI	RAATTY	4 cut(s)	14, 687, 702, 1317
AspS9I	GGNCC	3 cut(s)	286, 491, 805
AsuC2I	CCSGG	1 cut(s)	1260
AsuHPI	GGTGA	2 cut(s)	322, 901
AvaI	CYCGRG	1 cut(s)	1102
AvaII	GGWCC	1 cut(s)	286
BbvCI	CCTCAGC	2 cut(s)	53, 513
BbvI	GCAGC	8 cut(s)	106, 218, 433, 530, 586, 609, 771, 1183
BccI	CCATC	3 cut(s)	965, 982, 1117
BceAI	ACGGC	1 cut(s)	835
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	1260
BfaI	CTAG	5 cut(s)	318, 374, 524, 653, 933
BfmI	CTRYAG	1 cut(s)	1284
BglII	AGATCT	1 cut(s)	407
BlpI	GCTNAGC	1 cut(s)	815
Bme1390I	CCNGG	2 cut(s)	195, 1260
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	1102
BmgT120I	GGNCC	3 cut(s)	286, 491, 805
BmiI	GGNNCC	5 cut(s)	279, 288, 387, 493, 529
BmrFI	CCNGG	2 cut(s)	195, 1260
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	2 cut(s)	794, 1258
Bpu10I	CCTNAGC	2 cut(s)	53, 513
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	1260
BsaBI	GATNNNNATC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	439, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	1057, 1087
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse118I	RCCGGY	1 cut(s)	1178
Bse1I	ACTGG	3 cut(s)	561, 719, 785
Bse8I	GATNNNNATC	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	439, 692
BseGI	GGATG	2 cut(s)	59, 583
BseJI	GATNNNNATC	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	4 cut(s)	67, 224, 504, 724
BseNI	ACTGG	3 cut(s)	561, 719, 785
BseXI	GCAGC	8 cut(s)	106, 218, 433, 530, 586, 609, 771, 1183
BseYI	CCCAGC	2 cut(s)	122, 201
BsgI	GTGCAG	1 cut(s)	1248
Bsh1236I	CGCG	2 cut(s)	940, 1112
BshFI	GGCC	2 cut(s)	492, 807
BsiHKCI	CYCGRG	1 cut(s)	1102
BsiSI	CCGG	2 cut(s)	1179, 1259
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	492, 807
BsoBI	CYCGRG	1 cut(s)	1102
Bsp143I	GATC	4 cut(s)	401, 407, 898, 1171
Bsp1720I	GCTNAGC	1 cut(s)	815
Bsp19I	CCATGG	1 cut(s)	692
BspACI	CCGC	4 cut(s)	111, 449, 940, 1112
BspANI	GGCC	2 cut(s)	492, 807
BspCNI	CTCAG	4 cut(s)	66, 223, 505, 723
BspFNI	CGCG	2 cut(s)	940, 1112
BspLI	GGNNCC	5 cut(s)	279, 288, 387, 493, 529
BspPI	GGATC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	1039
BsrFI	RCCGGY	1 cut(s)	1178
BsrI	ACTGG	3 cut(s)	561, 719, 785
BssAI	RCCGGY	1 cut(s)	1178
BssECI	CCNNGG	2 cut(s)	439, 692
BssMI	GATC	4 cut(s)	401, 407, 898, 1171
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	106, 370, 381, 1207
Bst6I	CTCTTC	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	1114, 1156
BstDEI	CTNAG	7 cut(s)	31, 53, 210, 513, 710, 815, 840
BstDSI	CCRYGG	1 cut(s)	692
BstEII	GGTNACC	1 cut(s)	907
BstF5I	GGATG	2 cut(s)	59, 583
BstFNI	CGCG	2 cut(s)	940, 1112
BstKTI	GATC	4 cut(s)	404, 410, 901, 1174
BstMBI	GATC	4 cut(s)	401, 407, 898, 1171
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 119, 518, 527, 599, 980, 989, 1076
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	865
BstPI	GGTNACC	1 cut(s)	907
BstSCI	CCNGG	2 cut(s)	193, 1258
BstSFI	CTRYAG	1 cut(s)	1284
BstUI	CGCG	2 cut(s)	940, 1112
BstV1I	GCAGC	8 cut(s)	106, 218, 433, 530, 586, 609, 771, 1183
BstX2I	RGATCY	2 cut(s)	401, 407
BstYI	RGATCY	2 cut(s)	401, 407
BsuRI	GGCC	2 cut(s)	492, 807
BtgI	CCRYGG	1 cut(s)	692
BtsCI	GGATG	2 cut(s)	59, 583
BtsI	GCAGTG	2 cut(s)	1086, 1137
BtsIMutI	CAGTG	5 cut(s)	102, 386, 568, 1086, 1137
Cac8I	GCNNGC	2 cut(s)	1114, 1156
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr10I	RCCGGY	1 cut(s)	1178
Cfr13I	GGNCC	3 cut(s)	286, 491, 805
Csp6I	GTAC	2 cut(s)	436, 1146
CviAII	CATG	5 cut(s)	307, 532, 693, 862, 1090
CviQI	GTAC	2 cut(s)	436, 1146
DdeI	CTNAG	7 cut(s)	31, 53, 210, 513, 710, 815, 840
DpnI	GATC	4 cut(s)	403, 409, 900, 1173
DpnII	GATC	4 cut(s)	401, 407, 898, 1171
Eam1104I	CTCTTC	1 cut(s)	1039
EarI	CTCTTC	1 cut(s)	1039
Eco130I	CCWWGG	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	1102
Eco91I	GGTNACC	1 cut(s)	907
EcoO109I	RGGNCCY	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	907
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	5 cut(s)	310, 535, 696, 865, 1093
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 905, 937
FatI	CATG	5 cut(s)	306, 531, 692, 861, 1089
FauI	CCCGC	1 cut(s)	1105
FbaI	TGATCA	1 cut(s)	898
FokI	GGATG	2 cut(s)	46, 570
FspBI	CTAG	5 cut(s)	318, 374, 524, 653, 933
GsaI	CCCAGC	2 cut(s)	126, 205
GsuI	CTGGAG	2 cut(s)	794, 1258
HaeIII	GGCC	2 cut(s)	492, 807
HapII	CCGG	2 cut(s)	1179, 1259
Hin1II	CATG	5 cut(s)	310, 535, 696, 865, 1093
HinfI	GANTC	6 cut(s)	297, 614, 918, 1084, 1211, 1216
HpaII	CCGG	2 cut(s)	1179, 1259
HphI	GGTGA	2 cut(s)	322, 901
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	5 cut(s)	213, 580, 677, 1007, 1176
Hpy188III	TCNNGA	3 cut(s)	405, 824, 949
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	5 cut(s)	58, 219, 223, 476, 830
HpyCH4III	ACNGT	4 cut(s)	106, 370, 381, 1207
HpyCH4IV	ACGT	3 cut(s)	79, 749, 1148
HpyCH4V	TGCA	8 cut(s)	98, 272, 338, 983, 1079, 1199, 1229, 1272
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 119, 518, 527, 599, 980, 989, 1076
HpyF3I	CTNAG	7 cut(s)	31, 53, 210, 513, 710, 815, 840
HpySE526I	ACGT	3 cut(s)	79, 749, 1148
Hsp92II	CATG	5 cut(s)	310, 535, 696, 865, 1093
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	401, 407, 898, 1171
LguI	GCTCTTC	1 cut(s)	1039
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	8 cut(s)	106, 218, 433, 530, 586, 609, 771, 1183
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	5 cut(s)	318, 374, 524, 653, 933
MaeII	ACGT	3 cut(s)	79, 749, 1148
MaeIII	GTNAC	4 cut(s)	26, 563, 907, 928
MalI	GATC	4 cut(s)	403, 409, 900, 1173
MboI	GATC	4 cut(s)	401, 407, 898, 1171
MboII	GAAGA	5 cut(s)	227, 343, 709, 828, 1026
MfeI	CAATTG	2 cut(s)	93, 729
MflI	RGATCY	2 cut(s)	401, 407
MlyI	GAGTC	2 cut(s)	306, 1225
MnlI	CCTC	8 cut(s)	62, 367, 449, 482, 508, 582, 656, 818
MseI	TTAA	3 cut(s)	552, 738, 773
MslI	CAYNNNNRTG	1 cut(s)	1121
MspA1I	CMGCKG	2 cut(s)	113, 599
MspI	CCGG	2 cut(s)	1179, 1259
MspR9I	CCNGG	2 cut(s)	195, 1260
MunI	CAATTG	2 cut(s)	93, 729
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	2 cut(s)	940, 1112
MwoI	GCNNNNNNNGC	8 cut(s)	116, 119, 518, 527, 599, 980, 989, 1076
NciI	CCSGG	1 cut(s)	1260
NcoI	CCATGG	1 cut(s)	692
NdeII	GATC	4 cut(s)	401, 407, 898, 1171
NlaIII	CATG	5 cut(s)	310, 535, 696, 865, 1093
NlaIV	GGNNCC	5 cut(s)	279, 288, 387, 493, 529
NmuCI	GTSAC	3 cut(s)	563, 907, 928
NspI	RCATGY	1 cut(s)	865
PciI	ACATGT	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	1039
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	614, 918, 1084, 1211
PleI	GAGTC	2 cut(s)	305, 1224
PpsI	GAGTC	2 cut(s)	305, 1224
PscI	ACATGT	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	907
PspFI	CCCAGC	2 cut(s)	122, 201
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	5 cut(s)	279, 288, 387, 493, 529
PspPI	GGNCC	3 cut(s)	286, 491, 805
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	2 cut(s)	401, 407
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	2 cut(s)	437, 1147
RsaNI	GTAC	2 cut(s)	436, 1146
RseI	CAYNNNNRTG	1 cut(s)	1121
SapI	GCTCTTC	1 cut(s)	1039
SaqAI	TTAA	3 cut(s)	552, 738, 773
Sau3AI	GATC	4 cut(s)	401, 407, 898, 1171
Sau96I	GGNCC	3 cut(s)	286, 491, 805
SchI	GAGTC	2 cut(s)	306, 1225
ScrFI	CCNGG	2 cut(s)	195, 1260
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	1284
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	1121
SsiI	CCGC	4 cut(s)	111, 449, 940, 1112
SspMI	CTAG	5 cut(s)	318, 374, 524, 653, 933
StyD4I	CCNGG	2 cut(s)	193, 1258
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	4 cut(s)	106, 370, 381, 1207
TaiI	ACGT	3 cut(s)	82, 752, 1151
TaqI	TCGA	2 cut(s)	295, 1214
TauI	GCSGC	2 cut(s)	113, 452
TfiI	GAWTC	4 cut(s)	614, 918, 1084, 1211
Tru1I	TTAA	3 cut(s)	552, 738, 773
Tru9I	TTAA	3 cut(s)	552, 738, 773
TscAI	CASTG	5 cut(s)	109, 386, 568, 1086, 1144
TseFI	GTSAC	3 cut(s)	563, 907, 928
TseI	GCWGC	8 cut(s)	119, 206, 446, 518, 599, 622, 784, 1196
Tsp45I	GTSAC	3 cut(s)	563, 907, 928
TspDTI	ATGAA	6 cut(s)	26, 234, 337, 791, 955, 1243
TspGWI	ACGGA	2 cut(s)	52, 490
TspRI	CASTG	5 cut(s)	109, 386, 568, 1086, 1144
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	4 cut(s)	14, 687, 702, 1317
XceI	RCATGY	1 cut(s)	865
XspI	CTAG	5 cut(s)	318, 374, 524, 653, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.