RLG00000034856

anion transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004686
Physical Location & Seq
Reverse (-)
56104334 .. 56105656
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034856

Sequence Viewer

Length: 1323 bp
ATGGTGAAATTTCCTAAGCGCTACTTAATCGTCATATTGACCTTCATCTGCACGTCTGTTTGCTATATAGAACGGGTCGGGTTTTCGATTGCATATACTGTTGCTGCCGATGCTGCAGGAGTAAACCAATCGAGTAAAGGCACAATTCTTTCTACATTCTATTATGGTTATGCTTGTTCTCAAGTACCTGGAGGTTGGGCAGCTCAGAAAATTGGGGGAAGGAAGGTTCTTCTTCTCTCATTTGTGTTATGGTCAGCTACGTGTGCATTAGTTCCTCTAGACCCCAATCGAATCTTTGTCTTGGTGATTGCTCGGTTGCTTGTGGGTGTTGCACAAGGATTCATTTTCCCCTCAATCCACACAGTTCTAGCTCAGTGGGTTCCACCACATGAAAGATCCAGATCTGTTTCTCTTACTACTTCTGGTATGTACCTAGGAGCAGCTGCAGGAATGCTTCTCCTTCCAAGCCTTGTAAAGTACAGAGGCCCCCAATCCGTGTTTCTTGCTGAGGCAGCCTTAGGTGCCATGTGGTCTTTGCTGTGGTTCAAGTATGCCAGTGATCCACCTTCCTCTCAACATCCAAAAGCAACAGCTGCTGGTTTTGGGGAATCTTTGTTGCCGACCAAAGGAAACCAAAAGTTGAAAGTAGAGAATGGAGGAAGTTCCACTAGAACTGCCAAAATCCCATGGAAGAGAATTTTACTCAGTTTGCCAGTTTGGGCAATCGTGGTTAATAATTTCACGTTCCATTATGCTTTATACGTGTTGATGAACTGGCTGCCCACATACTTTGAATTAGGCCTCCAACTTAGCCTTCAGGAAATGGGTTCTTCTAAGATGTTGCCGTATCTCAACATGTTTATTTTCTCAAATATAGGTGGGGTGGTAGCTGACCACTTGGTCACCAAGAGAATATTGTCTGTGACTAATACTCGCAAGTTCTTGAACACCATTGGTTTCATAGTAGCTTCTCTTGCATTGATGGCAATTCCCATCTTCCGAACTTCCGATGGGGCTGTCTTTTGTTCTTCTGTGGCTCTTGGTTTCTTGGCACTCGGGAGGGCTGGTTTTGCAGTGAATCACATGGATATTGCCCCGAGATATGCTGGTATTGTAATGGGAGTTTCAAACACTGCTGGTACCTTAGCTGGCATTATTGGAGTTGATCTAACTGGCAAGCTTCTTGAAGCTGCAAGAACTGCTGATTCGAGTCTTTCAAGTCCAGAGAGCTGGAGACTGGTGTTTTTAATTCCGGGTCTGCTCTGCGTTTTCAGTTCTTTTGTATTTTTACTATTCTCAACTGGGGAGAGAATTTTTGACTGA

Protein Analysis

441

Amino Acids

47.64

Weight (kDa)

9.68

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 15 - 387 2.9e-50 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 899
Acc65I GGTACC 1 cut(s) 1139
AccB1I GGYRCC 2 cut(s) 521, 1139
AclWI GGATC 2 cut(s) 390, 554
AcsI RAATTY 3 cut(s) 8, 696, 1311
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 4 cut(s) 186, 431, 479, 1141
AfeI AGCGCT 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 626
AflIII ACRYGT 3 cut(s) 260, 762, 855
AgsI TTSAA 7 cut(s) 547, 643, 794, 946, 1128, 1187, 1218
AjiI CACGTC 1 cut(s) 54
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 4 cut(s) 483, 515, 798, 830
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
Alw26I GTCTC 1 cut(s) 1228
AlwI GGATC 2 cut(s) 390, 554
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 2 cut(s) 1055, 1096
Aor51HI AGCGCT 1 cut(s) 20
AoxI GGCC 2 cut(s) 484, 799
ApeKI GCWGC 9 cut(s) 104, 113, 200, 440, 443, 512, 593, 778, 1190
ApoI RAATTY 3 cut(s) 8, 696, 1311
Asp718I GGTACC 1 cut(s) 1139
AspA2I CCTAGG 1 cut(s) 433
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 1 cut(s) 1254
AsuHPI GGTGA 3 cut(s) 16, 316, 895
AvaI CYCGRG 2 cut(s) 1055, 1096
AvrII CCTAGG 1 cut(s) 433
AxyI CCTNAGG 1 cut(s) 517
BanI GGYRCC 2 cut(s) 521, 1139
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 9 cut(s) 91, 100, 212, 430, 452, 524, 580, 765, 1177
BccI CCATC 3 cut(s) 976, 1001, 1004
BceAI ACGGC 1 cut(s) 829
BciT130I CCWGG 1 cut(s) 189
BcnI CCSGG 1 cut(s) 1254
BcoDI GTCTC 1 cut(s) 1228
BfaI CTAG 4 cut(s) 278, 368, 434, 669
BfmI CTRYAG 2 cut(s) 114, 444
BfoI RGCGCY 1 cut(s) 22
BglII AGATCT 1 cut(s) 401
BisI GCNGC 9 cut(s) 105, 114, 201, 441, 444, 513, 594, 779, 1191
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 9 cut(s) 106, 115, 202, 442, 445, 514, 595, 780, 1192
Bme1390I CCNGG 2 cut(s) 189, 1254
BmeT110I CYCGRG 2 cut(s) 1055, 1096
BmgBI CACGTC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 4 cut(s) 381, 487, 523, 1141
BmrFI CCNGG 2 cut(s) 189, 1254
BmrI ACTGGG 1 cut(s) 1311
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 1311
BpmI CTGGAG 2 cut(s) 210, 1252
Bpu10I CCTNAGC 3 cut(s) 15, 507, 1144
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 1254
BsaAI YACGTR 2 cut(s) 261, 763
BsaBI GATNNNNATC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 433, 686
BsaXI ACNNNNNCTCC 2 cut(s) 1051, 1081
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse1I ACTGG 6 cut(s) 555, 713, 779, 1177, 1242, 1306
Bse21I CCTNAGG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 433, 686
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMII CTCAG 4 cut(s) 218, 386, 498, 718
BseNI ACTGG 6 cut(s) 555, 713, 779, 1177, 1242, 1306
BseXI GCAGC 9 cut(s) 91, 100, 212, 430, 452, 524, 580, 765, 1177
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 486, 801
BshNI GGYRCC 2 cut(s) 521, 1139
BsiHKCI CYCGRG 2 cut(s) 1055, 1096
BsiSI CCGG 1 cut(s) 1253
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 1 cut(s) 1228
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 2 cut(s) 486, 801
BsoBI CYCGRG 2 cut(s) 1055, 1096
Bsp143I GATC 4 cut(s) 395, 401, 559, 1165
Bsp19I CCATGG 1 cut(s) 686
BspANI GGCC 2 cut(s) 486, 801
BspCNI CTCAG 4 cut(s) 217, 385, 499, 717
BspLI GGNNCC 4 cut(s) 381, 487, 523, 1141
BspMAI CTGCAG 2 cut(s) 118, 448
BspPI GGATC 2 cut(s) 390, 554
BspT107I GGYRCC 2 cut(s) 521, 1139
BsrI ACTGG 6 cut(s) 555, 713, 779, 1177, 1242, 1306
BssECI CCNNGG 2 cut(s) 433, 686
BssMI GATC 4 cut(s) 395, 401, 559, 1165
BssT1I CCWWGG 2 cut(s) 433, 686
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 100, 364
Bst6I CTCTTC 1 cut(s) 686
BstAPI GCANNNNNTGC 2 cut(s) 593, 1199
BstBAI YACGTR 2 cut(s) 261, 763
BstC8I GCNNGC 2 cut(s) 1150, 1178
BstDEI CTNAG 9 cut(s) 15, 204, 372, 507, 517, 704, 809, 834, 1144
BstDSI CCRYGG 1 cut(s) 686
BstEII GGTNACC 1 cut(s) 901
BstF5I GGATG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 4 cut(s) 398, 404, 562, 1168
BstMAI GTCTC 1 cut(s) 1228
BstMBI GATC 4 cut(s) 395, 401, 559, 1165
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 859
BstPI GGTNACC 1 cut(s) 901
BstSCI CCNGG 2 cut(s) 187, 1252
BstSFI CTRYAG 2 cut(s) 114, 444
BstV1I GCAGC 9 cut(s) 91, 100, 212, 430, 452, 524, 580, 765, 1177
BstX2I RGATCY 2 cut(s) 395, 401
BstXI CCANNNNNNTGG 1 cut(s) 1230
BstYI RGATCY 2 cut(s) 395, 401
Bsu36I CCTNAGG 1 cut(s) 517
BsuRI GGCC 2 cut(s) 486, 801
BtgI CCRYGG 1 cut(s) 686
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 2 cut(s) 1080, 1131
BtsIMutI CAGTG 4 cut(s) 380, 562, 1080, 1131
Cac8I GCNNGC 2 cut(s) 1150, 1178
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 4 cut(s) 185, 430, 478, 1140
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 5 cut(s) 389, 526, 687, 856, 1084
CviQI GTAC 4 cut(s) 185, 430, 478, 1140
DdeI CTNAG 9 cut(s) 15, 204, 372, 507, 517, 704, 809, 834, 1144
DpnI GATC 4 cut(s) 397, 403, 561, 1167
DpnII GATC 4 cut(s) 395, 401, 559, 1165
DrdI GACNNNNNNGTC 1 cut(s) 899
DseDI GACNNNNNNGTC 1 cut(s) 899
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Eco130I CCWWGG 2 cut(s) 433, 686
Eco147I AGGCCT 1 cut(s) 801
Eco47III AGCGCT 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 800
Eco81I CCTNAGG 1 cut(s) 517
Eco88I CYCGRG 2 cut(s) 1055, 1096
Eco91I GGTNACC 1 cut(s) 901
EcoO109I RGGNCCY 1 cut(s) 485
EcoO65I GGTNACC 1 cut(s) 901
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 433, 686
ErhI CCWWGG 2 cut(s) 433, 686
FaeI CATG 5 cut(s) 392, 529, 690, 859, 1087
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 5 cut(s) 388, 525, 686, 855, 1083
Fnu4HI GCNGC 9 cut(s) 105, 114, 201, 441, 444, 513, 594, 779, 1191
FokI GGATG 1 cut(s) 564
Fsp4HI GCNGC 9 cut(s) 105, 114, 201, 441, 444, 513, 594, 779, 1191
FspBI CTAG 4 cut(s) 278, 368, 434, 669
GlaI GCGC 1 cut(s) 20
GluI GCNGC 9 cut(s) 105, 114, 201, 441, 444, 513, 594, 779, 1191
GsuI CTGGAG 2 cut(s) 210, 1252
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 2 cut(s) 486, 801
HapII CCGG 1 cut(s) 1253
HhaI GCGC 1 cut(s) 21
Hin1II CATG 5 cut(s) 392, 529, 690, 859, 1087
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 6 cut(s) 291, 339, 608, 1078, 1205, 1210
HpaII CCGG 1 cut(s) 1253
HphI GGTGA 3 cut(s) 16, 316, 895
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 207, 1001, 1009
Hpy188III TCNNGA 7 cut(s) 278, 399, 818, 943, 1057, 1184, 1223
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 6 cut(s) 52, 213, 217, 470, 576, 824
HpyCH4III ACNGT 2 cut(s) 100, 364
HpyCH4IV ACGT 4 cut(s) 53, 260, 743, 762
HpyCH4V TGCA 9 cut(s) 51, 92, 116, 266, 332, 446, 977, 1073, 1193
HpyF3I CTNAG 9 cut(s) 15, 204, 372, 507, 517, 704, 809, 834, 1144
HpySE526I ACGT 4 cut(s) 53, 260, 743, 762
Hsp92II CATG 5 cut(s) 392, 529, 690, 859, 1087
HspAI GCGC 1 cut(s) 19
KpnI GGTACC 1 cut(s) 1143
Kzo9I GATC 4 cut(s) 395, 401, 559, 1165
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 9 cut(s) 91, 100, 212, 430, 452, 524, 580, 765, 1177
LweI GCATC 1 cut(s) 100
MaeI CTAG 4 cut(s) 278, 368, 434, 669
MaeII ACGT 4 cut(s) 53, 260, 743, 762
MaeIII GTNAC 2 cut(s) 901, 922
MalI GATC 4 cut(s) 397, 403, 561, 1167
MboI GATC 4 cut(s) 395, 401, 559, 1165
MboII GAAGA 6 cut(s) 221, 224, 703, 822, 988, 1020
MflI RGATCY 2 cut(s) 395, 401
MluCI AATT 9 cut(s) 8, 144, 210, 696, 736, 794, 987, 1248, 1311
MlyI GAGTC 1 cut(s) 1219
MmeI TCCRAC 1 cut(s) 829
MnlI CCTC 9 cut(s) 185, 285, 361, 476, 502, 580, 650, 812, 1053
MseI TTAA 3 cut(s) 26, 732, 1247
MspA1I CMGCKG 2 cut(s) 443, 593
MspI CCGG 1 cut(s) 1253
MspR9I CCNGG 2 cut(s) 189, 1254
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 1 cut(s) 189
NciI CCSGG 1 cut(s) 1254
NcoI CCATGG 1 cut(s) 686
NdeII GATC 4 cut(s) 395, 401, 559, 1165
NlaIII CATG 5 cut(s) 392, 529, 690, 859, 1087
NlaIV GGNNCC 4 cut(s) 381, 487, 523, 1141
NmuCI GTSAC 2 cut(s) 901, 922
NspI RCATGY 1 cut(s) 859
PceI AGGCCT 1 cut(s) 801
PciI ACATGT 1 cut(s) 855
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 5 cut(s) 291, 339, 608, 1078, 1205
PkrI GCNGC 9 cut(s) 106, 115, 202, 442, 445, 514, 595, 780, 1192
PleI GAGTC 1 cut(s) 1218
PpsI GAGTC 1 cut(s) 1218
Ppu21I YACGTR 2 cut(s) 261, 763
PscI ACATGT 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 187
PspEI GGTNACC 1 cut(s) 901
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 4 cut(s) 381, 487, 523, 1141
PspPI GGNCC 1 cut(s) 485
PstI CTGCAG 2 cut(s) 118, 448
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 395, 401
PvuII CAGCTG 2 cut(s) 443, 593
RsaI GTAC 4 cut(s) 186, 431, 479, 1141
RsaNI GTAC 4 cut(s) 185, 430, 478, 1140
SaqAI TTAA 3 cut(s) 26, 732, 1247
SatI GCNGC 9 cut(s) 105, 114, 201, 441, 444, 513, 594, 779, 1191
Sau3AI GATC 4 cut(s) 395, 401, 559, 1165
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 1 cut(s) 1219
ScrFI CCNGG 2 cut(s) 189, 1254
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 114, 444
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 9 cut(s) 8, 144, 210, 696, 736, 794, 987, 1248, 1311
SseBI AGGCCT 1 cut(s) 801
SspI AATATT 1 cut(s) 915
SspMI CTAG 4 cut(s) 278, 368, 434, 669
StuI AGGCCT 1 cut(s) 801
StyD4I CCNGG 2 cut(s) 187, 1252
StyI CCWWGG 2 cut(s) 433, 686
TaaI ACNGT 2 cut(s) 100, 364
TaiI ACGT 4 cut(s) 56, 263, 746, 765
TaqI TCGA 4 cut(s) 86, 131, 289, 1208
TasI AATT 9 cut(s) 8, 144, 210, 696, 736, 794, 987, 1248, 1311
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 5 cut(s) 291, 339, 608, 1078, 1205
Tru1I TTAA 3 cut(s) 26, 732, 1247
Tru9I TTAA 3 cut(s) 26, 732, 1247
TscAI CASTG 4 cut(s) 380, 562, 1080, 1138
TseFI GTSAC 2 cut(s) 901, 922
TseI GCWGC 9 cut(s) 104, 113, 200, 440, 443, 512, 593, 778, 1190
Tsp45I GTSAC 2 cut(s) 901, 922
TspDTI ATGAA 5 cut(s) 34, 331, 405, 785, 949
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 4 cut(s) 380, 562, 1080, 1138
XapI RAATTY 3 cut(s) 8, 696, 1311
XbaI TCTAGA 1 cut(s) 277
XceI RCATGY 1 cut(s) 859
XmaJI CCTAGG 1 cut(s) 433
XspI CTAG 4 cut(s) 278, 368, 434, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.