Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004686

Physical Location & Seq

Genomic Coordinates Forward (+)

46276145 .. 46277657

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG251200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCTCAAAGTTATTCTACTTTCTCAGATTAATTCATACCAAAGTATGTTGATAAAATATTTTCCCAAGCGTTACATGATTGTAACTCTAACTTTCATCAGCACATGCATTTGCTACATAGAACGTGTAGGATTTTCGATTGCATACACCGCTGCAGCAGATGCTTCCGGTATAAGTCAATCAAACAAAGGCACCATTCTCTCTACATTCTATTATGGCTATGCCTGTTCACAAATTCCTGGAGGTTGGGCTGCTCAAAAGTTTGGAGGAAGGTCTGTTCTCCTCATCTCATTTGTTTCATGGTCCTTAACATATGCTTTTGTCCCTCTGGACCCTAAAAATGTTAAAACTATGGTTTTGGCTCGGTTGCTTGTTGGTGTGGCACAGGGGTTCATGTTCCCTTCCATCCACTCTGTTCTCGCTCAATGGGTTCCACAAAATGAGAGGTCCAGATCAGTTTCCCTCACAACTTCTGGGATGTACCTTGGTGCAGCTGCAGGTATGCTTGTGGTTCCAACCCTAGTGAAGTTGACAAGCCCCCAATTTGTGTTTTTGGGTGAAGCAACTTTAGGGACTATTTGGTCAGTGCTTTGGTTAAACTATGCTAGTGAACCACCAATTCAATTGTCTAAGCAAAATGGAGCATTTCCTAATTCTACTAGAAAAACCAAAATTCCATGGAAGAGTATTTTTAGAAGCTTACCTATTTGGGCTATTGTGGTGAACAATTTCACTTTCCACTATGCTTTGTATGTCATGATGAATTGGCTTCCAACATACTTTGAACAAGGCCTGAAGCTTAGTCTTCAAGAAATGGGGACTTACAAAATGGTGCCTTATTTCAACATGTTCATGTTCTCAAACATTGGTGGATTTGTAGCTGATTATTTAATCACAAAGAGGCTCATGTCTGTGACTAGAACTAGAAAGTTCTTGAACACTTTAGGGTTCATGGTTGCTTCTATTGCATTGATGGCACTGCCCAAATTCAGAACTTCAATTGGGGCTGTGATTTGTTCTTCATTTGCACTTGGGTTTTTGGCTTTAGGCAGAGCTGGGTTTGCAGTGAATCACATGGACATTGCTCCAAGGTATGCAGGAATTGTGATGGGTGTGTCTAACACAGCTGGTACATTAGCTGGGATAATTGGGGTTGATCTCACTGGGAAACTTTTAGAAGCTTCTAGATCTGCTCATGATTTGGATCTTTCGAGTCCAGAAAGCTGGACATCAGTTTTCATGATTCCCGGGGTGCTTTGCATTTTCAGCTCAATCTGGTTTTTGATCTTCTCGACTGGGGAGAGGATTTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

438

Amino Acids

48.41

Weight (kDa)

9.69

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	32 - 384	4.4e-49	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44370
fragaria_vesca	FvH4_2g16800 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940 FvH4_3g28940
malus_domestica	MD02G1271000.v1.1
prunus_persica	Prupe.1G563500_v2.0.a1 Prupe.8G180300_v2.0.a1
pyrus_communis	pycom02g23190 pycom07g02820
rosa_chinensis	RchiOBHm_Chr5g0051801 RchiOBHm_Chr6g0280921
rosa_laevigata	RLG00000013016 RLG00000034856
rosa_multiflora	Rmu_sc0027876.1_g000001 Rmu_sc0027877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027340 Rroxscaffold_7G00187490
rosa_rugosa	Rorug05G0276900 Rorug06G0136700
rosa_samantha	Rh5AG349000 Rh5BG360100 Rh5CG385100 Rh5DG374800 Rh6AG249200 Rh6BG251200 Rh6CG251900 Rh6DG243700
rosa_wichuraiana	Rw5G032920 Rw6G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	488
AccB1I	GGYRCC	2 cut(s)	191, 832
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	1212
AcsI	RAATTY	3 cut(s)	234, 672, 986
AcuI	CTGAAG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	482, 1132
AflIII	ACRYGT	2 cut(s)	124, 846
AgsI	TTSAA	6 cut(s)	623, 785, 809, 844, 937, 999
AjnI	CCWGG	1 cut(s)	238
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AlwI	GGATC	1 cut(s)	1212
Ama87I	CYCGRG	1 cut(s)	1247
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	5 cut(s)	152, 155, 251, 491, 494
ApoI	RAATTY	3 cut(s)	234, 672, 986
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	728
AspS9I	GGNCC	3 cut(s)	303, 331, 447
AsuC2I	CCSGG	2 cut(s)	1248, 1249
AsuHPI	GGTGA	2 cut(s)	569, 733
AvaI	CYCGRG	1 cut(s)	1247
AvaII	GGWCC	3 cut(s)	303, 331, 447
BanI	GGYRCC	2 cut(s)	191, 832
BbsI	GAAGAC	1 cut(s)	797
BbvI	GCAGC	5 cut(s)	139, 167, 238, 481, 503
BccI	CCATC	3 cut(s)	413, 967, 1102
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	2 cut(s)	1248, 1249
BfaI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
BfmI	CTRYAG	2 cut(s)	153, 495
BfuAI	ACCTGC	1 cut(s)	488
BglII	AGATCT	1 cut(s)	1187
BisI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
BlsI	GCNGC	5 cut(s)	154, 157, 253, 493, 496
Bme1390I	CCNGG	3 cut(s)	240, 1248, 1249
Bme18I	GGWCC	3 cut(s)	303, 331, 447
BmeT110I	CYCGRG	1 cut(s)	1247
BmgT120I	GGNCC	3 cut(s)	303, 331, 447
BmiI	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
BmrFI	CCNGG	3 cut(s)	240, 1248, 1249
BmrI	ACTGGG	2 cut(s)	1173, 1305
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	2 cut(s)	1173, 1305
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	1248, 1249
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaJI	CCNNGG	5 cut(s)	484, 677, 1088, 1247, 1248
BsaWI	WCCGGW	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	1168, 1300
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	5 cut(s)	484, 677, 1088, 1247, 1248
BseGI	GGATG	2 cut(s)	405, 483
BseJI	GATNNNNATC	1 cut(s)	1203
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	1168, 1300
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	139, 167, 238, 481, 503
BseYI	CCCAGC	2 cut(s)	1055, 1139
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	792
BshNI	GGYRCC	2 cut(s)	191, 832
BsiHKCI	CYCGRG	1 cut(s)	1247
BsiSI	CCGG	2 cut(s)	168, 1248
BslFI	GGGAC	3 cut(s)	308, 586, 832
BsmFI	GGGAC	3 cut(s)	308, 586, 832
BsnI	GGCC	1 cut(s)	792
BsoBI	CYCGRG	1 cut(s)	1247
Bsp143I	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	3 cut(s)	756, 1195, 1239
BspLI	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
BspMAI	CTGCAG	2 cut(s)	157, 499
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	1212
BspT107I	GGYRCC	2 cut(s)	191, 832
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	2 cut(s)	1168, 1300
BssECI	CCNNGG	5 cut(s)	484, 677, 1088, 1247, 1248
BssMI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
BssT1I	CCWWGG	3 cut(s)	484, 677, 1088
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	24, 630, 800
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	405, 483
BstKTI	GATC	5 cut(s)	455, 1159, 1190, 1207, 1287
BstMBI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 161, 965, 974, 1061, 1266
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	108, 850
BstSCI	CCNGG	3 cut(s)	238, 1246, 1247
BstSFI	CTRYAG	2 cut(s)	153, 495
BstV1I	GCAGC	5 cut(s)	139, 167, 238, 481, 503
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	2 cut(s)	1187, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	1224
BstYI	RGATCY	2 cut(s)	1187, 1204
BsuRI	GGCC	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	2 cut(s)	405, 483
BtsI	GCAGTG	2 cut(s)	977, 1071
BtsIMutI	CAGTG	4 cut(s)	591, 977, 1071, 1161
BveI	ACCTGC	1 cut(s)	488
CciI	TCATGA	3 cut(s)	756, 1195, 1239
Cfr13I	GGNCC	3 cut(s)	303, 331, 447
Cfr9I	CCCGGG	1 cut(s)	1247
Csp6I	GTAC	2 cut(s)	481, 1131
CviQI	GTAC	2 cut(s)	481, 1131
DdeI	CTNAG	3 cut(s)	24, 630, 800
DpnI	GATC	5 cut(s)	454, 1158, 1189, 1206, 1286
DpnII	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	3 cut(s)	484, 677, 1088
Eco147I	AGGCCT	1 cut(s)	792
Eco47I	GGWCC	3 cut(s)	303, 331, 447
Eco57I	CTGAAG	1 cut(s)	815
Eco88I	CYCGRG	1 cut(s)	1247
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	3 cut(s)	484, 677, 1088
EcoT22I	ATGCAT	1 cut(s)	110
ErhI	CCWWGG	3 cut(s)	484, 677, 1088
FaqI	GGGAC	3 cut(s)	308, 586, 832
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
FokI	GGATG	2 cut(s)	392, 490
Fsp4HI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
FspBI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
GluI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
GsaI	CCCAGC	2 cut(s)	1059, 1143
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	2 cut(s)	168, 1248
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HindIII	AAGCTT	3 cut(s)	697, 797, 1179
HinfI	GANTC	3 cut(s)	1069, 1213, 1243
HpaII	CCGG	2 cut(s)	168, 1248
HphI	GGTGA	2 cut(s)	569, 733
Hpy166II	GTNNAC	4 cut(s)	230, 531, 611, 724
Hpy188I	TCNGA	2 cut(s)	27, 992
Hpy8I	GTNNAC	4 cut(s)	230, 531, 611, 724
HpyAV	CCTTC	2 cut(s)	264, 411
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 161, 965, 974, 1061, 1266
HpyF3I	CTNAG	3 cut(s)	24, 630, 800
HpySE526I	ACGT	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
LmnI	GCTCC	2 cut(s)	641, 1090
Lsp1109I	GCAGC	5 cut(s)	139, 167, 238, 481, 503
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	71, 82, 913
MalI	GATC	5 cut(s)	454, 1158, 1189, 1206, 1286
MboI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
MboII	GAAGA	4 cut(s)	694, 797, 1011, 1279
MfeI	CAATTG	2 cut(s)	623, 999
MflI	RGATCY	2 cut(s)	1187, 1204
MlyI	GAGTC	1 cut(s)	1222
MmeI	TCCRAC	2 cut(s)	539, 797
MnlI	CCTC	8 cut(s)	236, 260, 293, 336, 438, 473, 894, 1296
Mph1103I	ATGCAT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	5 cut(s)	30, 308, 345, 596, 890
MslI	CAYNNNNRTG	2 cut(s)	851, 911
MspA1I	CMGCKG	3 cut(s)	152, 494, 1127
MspI	CCGG	2 cut(s)	168, 1248
MspR9I	CCNGG	3 cut(s)	240, 1248, 1249
MunI	CAATTG	2 cut(s)	623, 999
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	6 cut(s)	149, 161, 965, 974, 1061, 1266
NciI	CCSGG	2 cut(s)	1248, 1249
NcoI	CCATGG	1 cut(s)	677
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
NlaIV	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
NmuCI	GTSAC	1 cut(s)	913
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	2 cut(s)	108, 850
PagI	TCATGA	3 cut(s)	756, 1195, 1239
PceI	AGGCCT	1 cut(s)	792
PciI	ACATGT	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	1069, 1243
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	5 cut(s)	154, 157, 253, 493, 496
PleI	GAGTC	1 cut(s)	1221
PpsI	GAGTC	1 cut(s)	1221
PscI	ACATGT	1 cut(s)	846
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	2 cut(s)	1055, 1139
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	5 cut(s)	193, 333, 432, 513, 834
PspPI	GGNCC	3 cut(s)	303, 331, 447
PstI	CTGCAG	2 cut(s)	157, 499
PsuI	RGATCY	2 cut(s)	1187, 1204
PvuII	CAGCTG	2 cut(s)	494, 1127
RsaI	GTAC	2 cut(s)	482, 1132
RsaNI	GTAC	2 cut(s)	481, 1131
RseI	CAYNNNNRTG	2 cut(s)	851, 911
SaqAI	TTAA	5 cut(s)	30, 308, 345, 596, 890
SatI	GCNGC	5 cut(s)	153, 156, 252, 492, 495
Sau3AI	GATC	5 cut(s)	452, 1156, 1187, 1204, 1284
Sau96I	GGNCC	3 cut(s)	303, 331, 447
SchI	GAGTC	1 cut(s)	1222
ScrFI	CCNGG	3 cut(s)	240, 1248, 1249
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	2 cut(s)	153, 495
SinI	GGWCC	3 cut(s)	303, 331, 447
SmaI	CCCGGG	1 cut(s)	1249
SmiMI	CAYNNNNRTG	2 cut(s)	851, 911
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	59
SspMI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	3 cut(s)	238, 1246, 1247
StyI	CCWWGG	3 cut(s)	484, 677, 1088
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	137, 1211, 1292
TfiI	GAWTC	2 cut(s)	1069, 1243
Tru1I	TTAA	5 cut(s)	30, 308, 345, 596, 890
Tru9I	TTAA	5 cut(s)	30, 308, 345, 596, 890
TscAI	CASTG	4 cut(s)	591, 984, 1071, 1168
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	5 cut(s)	152, 155, 251, 491, 494
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	9 cut(s)	24, 85, 288, 382, 776, 841, 940, 1011, 1228
TspMI	CCCGGG	1 cut(s)	1247
TspRI	CASTG	4 cut(s)	591, 984, 1071, 1168
VpaK11BI	GGWCC	3 cut(s)	303, 331, 447
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	3 cut(s)	234, 672, 986
XbaI	TCTAGA	1 cut(s)	1184
XceI	RCATGY	2 cut(s)	108, 850
XmaI	CCCGGG	1 cut(s)	1247
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	6 cut(s)	521, 606, 660, 918, 924, 1185
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.