Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

14681573 .. 14685110

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16900.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCCATGGCTTTGAACAGTGTAATCCCCCACACCAGAGCTTTAAGCTTAAGCACTTCCTTGCCTTCTTCTCCTCACAAAAAGCCTTCACCCCCTCAATTTCCACACCCTCAAACTCGTCGCTCTGCTACTCAAATTGTCCAGACCGCTGCCTCCTCCTCCACCAAGGCCACCCTCTCTGACCTTGAACTCCAACTTCATGAGGATCATAGCAGAAGCCTCAATCCGACCTCCACTTCTGCCTCTGCGTGGTCCGAATTTGCCAGAAATGTATCGGGTGAATGGGATGGCTATGGAGCAGACTTCACAACCGAAGGGATCCCAATTGAACTCCCGGAAATGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACTCAGTGTCCCACTCTTGCTGACCCGGAAGACCAAGTTCTTGCCTACAAGACGATAGAGCTACTTCCCACGGTTGGATGTGAAGCCGATGCTGCTACGCGGTACAGCATCCTTGAGAGGAATGTGGGTGGTGTGGACAACAAAGTTGCTGCATTTGCCTATCAGTCTAGTGGGTGTTATGTGTCTGTTTTGCCGGTGGAGGATAAGAGTTCGAATAAGTTGTTGGAATTGGAGTATTGTTTGATCAGTCCTCAAGATAAGGAGTCTCGTATGAGGATAATTCAGGTCATTCGCATAGACAATACGAAGATGATATTGCAAAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGACCGTTCAGAAATGGGGAGCAATTAGGCGGATGTGCCATCCGTGATTCTGCTTTTGCTACTACGCCTGCATTGGAAGCTTTGAAAGTTGTTGGTACTTGGCGGAGCTCCAGTTCTGTTGCCAATTTTAGTGGTTCTCAAAATAACTTTCTTCAAGAACTTTTAGGCGACAGTGAGCAGATCTCAGCAAGAGATGAAAGTGGTCTCATATTGCTTCCCAAGCAATTGTGGTGTTCAGTAAAAGAAGGTAAAGATGGCGATACGTACAGCGAGGTGGGGTGGTTATTAGATCAAGGACGTGCCATCACATCAAGATGCACATTCTCAAGCACCGCAACTCTGAAGGCAAGTTTACATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.49

Weight (kDa)

5.13

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	493
AciI	CCGC	5 cut(s)	147, 493, 774, 847, 1077
AclWI	GGATC	3 cut(s)	213, 313, 326
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	1106
AfaI	GTAC	3 cut(s)	497, 841, 1010
AfiI	CCNNNNNNNGG	3 cut(s)	249, 340, 467
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	16, 188, 329, 829, 899
AhdI	GACNNNNNGTC	1 cut(s)	399
AjiI	CACGTC	1 cut(s)	1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AloI	GAACNNNNNNTCC	2 cut(s)	841, 873
AluBI	AGCT	5 cut(s)	41, 48, 454, 824, 852
AluI	AGCT	5 cut(s)	41, 48, 454, 824, 852
Alw21I	GWGCWC	1 cut(s)	854
Alw26I	GTCTC	2 cut(s)	663, 953
AlwI	GGATC	3 cut(s)	213, 313, 326
AoxI	GGCC	2 cut(s)	3, 168
ApeKI	GCWGC	3 cut(s)	149, 485, 542
ApoI	RAATTY	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	252, 746
AsuC2I	CCSGG	2 cut(s)	335, 419
AsuHPI	GGTGA	2 cut(s)	81, 290
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	252, 746
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	854
BbvI	GCAGC	3 cut(s)	136, 472, 529
BccI	CCATC	4 cut(s)	281, 791, 992, 1055
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	2 cut(s)	335, 419
BcoDI	GTCTC	2 cut(s)	663, 953
BfaI	CTAG	2 cut(s)	561, 1105
BfrI	CTTAAG	1 cut(s)	49
BglII	AGATCT	1 cut(s)	924
BisI	GCNGC	3 cut(s)	150, 486, 543
BlsI	GCNGC	3 cut(s)	151, 487, 544
Bme1390I	CCNGG	2 cut(s)	335, 419
Bme18I	GGWCC	2 cut(s)	252, 746
BmeRI	GACNNNNNGTC	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	1043
BmgT120I	GGNCC	2 cut(s)	252, 746
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	2 cut(s)	335, 419
BmsI	GCATC	4 cut(s)	343, 472, 510, 1049
BpiI	GAAGAC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	1 cut(s)	838
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	3 cut(s)	527, 630, 1054
BpuMI	CCSGG	2 cut(s)	335, 419
BsaAI	YACGTR	1 cut(s)	1008
BsaI	GGTCTC	1 cut(s)	953
BsaJI	CCNNGG	3 cut(s)	6, 165, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 340, 467
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	392, 855
BseDI	CCNNGG	3 cut(s)	6, 165, 462
BseGI	GGATG	5 cut(s)	292, 476, 501, 782, 783
BseLI	CCNNNNNNNGG	3 cut(s)	249, 340, 467
BseMII	CTCAG	2 cut(s)	410, 942
BseNI	ACTGG	2 cut(s)	392, 855
BseRI	GAGGAG	3 cut(s)	63, 145, 148
BseXI	GCAGC	3 cut(s)	136, 472, 529
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	5, 170
BsiHKAI	GWGCWC	1 cut(s)	854
BsiSI	CCGG	3 cut(s)	335, 419, 587
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	249, 340, 467
BsmAI	GTCTC	2 cut(s)	663, 953
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	5, 170
Bso31I	GGTCTC	1 cut(s)	953
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	5 cut(s)	205, 318, 636, 924, 1033
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	5 cut(s)	147, 493, 774, 847, 1077
BspANI	GGCC	2 cut(s)	5, 170
BspCNI	CTCAG	2 cut(s)	409, 941
BspFNI	CGCG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	3 cut(s)	213, 313, 326
BspT104I	TTCGAA	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	953
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	392, 855
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	3 cut(s)	6, 165, 462
BssMI	GATC	5 cut(s)	205, 318, 636, 924, 1033
BssT1I	CCWWGG	2 cut(s)	6, 165
Bst4CI	ACNGT	5 cut(s)	20, 466, 738, 750, 917
BstAFI	CTTAAG	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	1008
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	3 cut(s)	396, 719, 928
BstDSI	CCRYGG	2 cut(s)	6, 462
BstF5I	GGATG	5 cut(s)	292, 476, 501, 782, 783
BstFNI	CGCG	1 cut(s)	493
BstKTI	GATC	5 cut(s)	208, 321, 639, 927, 1036
BstMAI	GTCTC	2 cut(s)	663, 953
BstMBI	GATC	5 cut(s)	205, 318, 636, 924, 1033
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 548, 821, 964
BstSCI	CCNGG	2 cut(s)	333, 417
BstSNI	TACGTA	1 cut(s)	1008
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	3 cut(s)	136, 472, 529
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	318, 924
BstYI	RGATCY	2 cut(s)	318, 924
BsuRI	GGCC	2 cut(s)	5, 170
BtgI	CCRYGG	2 cut(s)	6, 462
BtrI	CACGTC	1 cut(s)	1043
BtsCI	GGATG	5 cut(s)	292, 476, 501, 782, 783
BtsIMutI	CAGTG	4 cut(s)	25, 404, 743, 922
Cac8I	GCNNGC	1 cut(s)	813
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	252, 746
Csp6I	GTAC	3 cut(s)	496, 840, 1009
CspCI	CAANNNNNGTGG	2 cut(s)	856, 891
CviAII	CATG	2 cut(s)	7, 200
CviQI	GTAC	3 cut(s)	496, 840, 1009
DdeI	CTNAG	3 cut(s)	396, 719, 928
DpnI	GATC	5 cut(s)	207, 320, 638, 926, 1035
DpnII	GATC	5 cut(s)	205, 318, 636, 924, 1033
DriI	GACNNNNNGTC	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	399
EciI	GGCGGA	2 cut(s)	789, 862
Ecl136II	GAGCTC	1 cut(s)	852
Eco105I	TACGTA	1 cut(s)	1008
Eco130I	CCWWGG	2 cut(s)	6, 165
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	953
Eco47I	GGWCC	2 cut(s)	252, 746
Eco53kI	GAGCTC	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	1106
EcoICRI	GAGCTC	1 cut(s)	852
EcoT14I	CCWWGG	2 cut(s)	6, 165
EcoT38I	GRGCYC	1 cut(s)	854
ErhI	CCWWGG	2 cut(s)	6, 165
FaeI	CATG	2 cut(s)	10, 203
FaiI	YATR	9 cut(s)	8, 201, 210, 294, 573, 665, 689, 744, 953
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	2 cut(s)	6, 199
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	150, 486, 543
FokI	GGATG	5 cut(s)	299, 483, 488, 770, 789
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	3 cut(s)	150, 486, 543
FspBI	CTAG	2 cut(s)	561, 1105
GluI	GCNGC	3 cut(s)	150, 486, 543
GsuI	CTGGAG	1 cut(s)	838
HaeIII	GGCC	2 cut(s)	5, 170
HapII	CCGG	3 cut(s)	335, 419, 587
Hin1II	CATG	2 cut(s)	10, 203
HindIII	AAGCTT	2 cut(s)	46, 822
HinfI	GANTC	3 cut(s)	394, 656, 791
HpaII	CCGG	3 cut(s)	335, 419, 587
HphI	GGTGA	2 cut(s)	81, 290
Hpy166II	GTNNAC	3 cut(s)	529, 734, 1097
Hpy188I	TCNGA	5 cut(s)	181, 228, 256, 755, 1086
Hpy188III	TCNNGA	5 cut(s)	142, 200, 647, 899, 1056
Hpy8I	GTNNAC	3 cut(s)	529, 734, 1097
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	5 cut(s)	75, 96, 308, 983, 1081
HpyCH4III	ACNGT	5 cut(s)	20, 466, 738, 750, 917
HpyCH4IV	ACGT	2 cut(s)	1007, 1042
HpyCH4V	TGCA	4 cut(s)	545, 712, 815, 1062
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 548, 821, 964
HpyF3I	CTNAG	3 cut(s)	396, 719, 928
HpySE526I	ACGT	2 cut(s)	1007, 1042
Hsp92II	CATG	2 cut(s)	10, 203
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	205, 318, 636, 924, 1033
LmnI	GCTCC	4 cut(s)	296, 763, 849, 857
Lsp1109I	GCAGC	3 cut(s)	136, 472, 529
LweI	GCATC	4 cut(s)	343, 472, 510, 1049
MaeI	CTAG	2 cut(s)	561, 1105
MaeII	ACGT	2 cut(s)	1007, 1042
MalI	GATC	5 cut(s)	207, 320, 638, 926, 1035
MboI	GATC	5 cut(s)	205, 318, 636, 924, 1033
MboII	GAAGA	4 cut(s)	60, 434, 712, 887
MfeI	CAATTG	2 cut(s)	324, 968
MflI	RGATCY	2 cut(s)	318, 924
MhlI	GDGCHC	1 cut(s)	854
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	98, 135, 257, 324, 620, 672, 767, 868, 968
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	388, 665
MmeI	TCCRAC	4 cut(s)	217, 251, 448, 597
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	44, 50, 375
MslI	CAYNNNNRTG	1 cut(s)	1057
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	3 cut(s)	335, 419, 587
MspR9I	CCNGG	2 cut(s)	335, 419
MunI	CAATTG	2 cut(s)	324, 968
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	4 cut(s)	485, 548, 821, 964
NciI	CCSGG	2 cut(s)	335, 419
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	5 cut(s)	205, 318, 636, 924, 1033
NlaIII	CATG	2 cut(s)	10, 203
NlaIV	GGNNCC	1 cut(s)	320
NspV	TTCGAA	1 cut(s)	605
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	3 cut(s)	151, 487, 544
PleI	GAGTC	2 cut(s)	388, 664
PpsI	GAGTC	2 cut(s)	388, 664
Ppu21I	YACGTR	1 cut(s)	1008
Psp124BI	GAGCTC	1 cut(s)	854
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	252, 746
PsrI	GAACNNNNNNTAC	2 cut(s)	734, 766
PsuI	RGATCY	2 cut(s)	318, 924
RsaI	GTAC	3 cut(s)	497, 841, 1010
RsaNI	GTAC	3 cut(s)	496, 840, 1009
RseI	CAYNNNNRTG	1 cut(s)	1057
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	3 cut(s)	44, 50, 375
SatI	GCNGC	3 cut(s)	150, 486, 543
Sau3AI	GATC	5 cut(s)	205, 318, 636, 924, 1033
Sau96I	GGNCC	2 cut(s)	252, 746
SchI	GAGTC	2 cut(s)	388, 665
ScrFI	CCNGG	2 cut(s)	335, 419
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	4 cut(s)	343, 472, 510, 1049
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	2 cut(s)	252, 746
SmiMI	CAYNNNNRTG	1 cut(s)	1057
SmlI	CTYRAG	4 cut(s)	49, 506, 645, 1069
SmoI	CTYRAG	4 cut(s)	49, 506, 645, 1069
SnaBI	TACGTA	1 cut(s)	1008
Sse9I	AATT	9 cut(s)	98, 135, 257, 324, 620, 672, 767, 868, 968
SsiI	CCGC	5 cut(s)	147, 493, 774, 847, 1077
SspMI	CTAG	2 cut(s)	561, 1105
SstI	GAGCTC	1 cut(s)	854
StyD4I	CCNGG	2 cut(s)	333, 417
StyI	CCWWGG	2 cut(s)	6, 165
TaaI	ACNGT	5 cut(s)	20, 466, 738, 750, 917
TaiI	ACGT	2 cut(s)	1010, 1045
TaqI	TCGA	2 cut(s)	384, 605
TasI	AATT	9 cut(s)	98, 135, 257, 324, 620, 672, 767, 868, 968
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	3 cut(s)	44, 50, 375
Tru9I	TTAA	3 cut(s)	44, 50, 375
TscAI	CASTG	4 cut(s)	25, 404, 743, 922
TseI	GCWGC	3 cut(s)	149, 485, 542
TspDTI	ATGAA	2 cut(s)	188, 954
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	4 cut(s)	25, 404, 743, 922
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	252, 746
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	2 cut(s)	561, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.