Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

27042366 .. 27047400

Gene Structure 5035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG124500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGGGGCTAGGGAAAGCCGAACAGCTAATCAAAAGATCTAAGCTACGTGTGTTTTTCCTGAATATTCTTTTCAGAGCGTTCTCTGTTGCTGTGGTCTATGATTTGAACAAGATTGGCCTTAAAGCATTTTCAGGAAGTGAAATAATAATGCCATTGCTTGCTTTAAACTCCATGTCCTTGATGAGGATGTTGTCGCTAATGGTGTATTCAAATCAATACTATGAGTGCAAGGAGACTCATGGAGAAGAGCTTGAACTGCAAGGAATCGACTCTCTAATCCTTGACGCTCTGTACTCCTCTCCTCGCAGCTCATCGATAGCCCCTGTGTTCGCAAATTCAATCAAGGTACAAGAGTTTCTGTGCTTCAAAGCAGAGCAGTTGAAGCTATTAGGTTTTGATTGTATAGAGACTCAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACGATAGAGCTACTTCCCACAGTTGGATGTGAAGCCGATGCTGCTACACAGTACAGCATTCTTGAGAGGAATGTAGTTGGTGTGAACAACAAAGTTTCTGCCTTTGCGTATCAGTCTAGTGGATGTTATGTGTTTGTTTTGCCAGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGATAATTCAGGTGATTCGCATAGACAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCCATCCGTGATTCTGCTTTTGCTTCTACGCCCACATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCGGAGCTCCAGTGCTGTTGCCACTTTTAATGGTTCTCAAAATACTACCTATGCCATGGTTCTGCCTTTTTTGCAAAAGAGGTCAAAAATTACTGAAATTGTAGCAGCACATGACATTGTGTTTGCTCTTGTGCAGTCTAGTGTTTTTGCAGCATTTAGCCGAGGTAGTAGCTGTTCTATTTGGACTTTCAATGTTATATGGATCTACTTAAATAAGTTTTTACTTCCGGGAAGTTCATGGAGGATATGCTTTTTGAATGTTAATCCCTGCGAAGTTATAAGAAGCTTGTTTTATAATAAAAACAATGACACTCCAATCACAATTTCAGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

44.67

Weight (kDa)

6.74

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7899	PF25463	301 - 353	4.1e-09	Domain of unknown function (DUF7899)
DUF7899	PF25463	368 - 398	6.9e-10	Domain of unknown function (DUF7899)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1142, 1158
AciI	CCGC	1 cut(s)	865
AclWI	GGATC	1 cut(s)	1073
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	4 cut(s)	296, 351, 515, 859
AfiI	CCNNNNNNNGG	2 cut(s)	186, 485
AflIII	ACRYGT	1 cut(s)	49
AhdI	GACNNNNNGTC	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	3 cut(s)	617, 649, 1171
Alw21I	GWGCWC	1 cut(s)	872
Alw26I	GTCTC	3 cut(s)	230, 404, 681
AlwI	GGATC	1 cut(s)	1073
AoxI	GGCC	2 cut(s)	118, 764
ApeKI	GCWGC	4 cut(s)	309, 503, 968, 1013
ApoI	RAATTY	1 cut(s)	337
ArsI	GACNNNNNNTTYG	2 cut(s)	968, 1000
AspS9I	GGNCC	1 cut(s)	764
AsuC2I	CCSGG	1 cut(s)	1092
AsuHPI	GGTGA	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BanII	GRGCYC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	872
BbvI	GCAGC	4 cut(s)	321, 490, 980, 1025
BccI	CCATC	2 cut(s)	715, 809
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	1092
BcoDI	GTCTC	3 cut(s)	230, 404, 681
BfaI	CTAG	3 cut(s)	11, 579, 1002
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	4 cut(s)	310, 504, 969, 1014
BlsI	GCNGC	4 cut(s)	311, 505, 970, 1015
Bme1390I	CCNGG	1 cut(s)	1092
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	764
BmrFI	CCNGG	1 cut(s)	1092
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	856
BpuEI	CTTGAG	2 cut(s)	545, 648
BpuMI	CCSGG	1 cut(s)	1092
Bsa29I	ATCGAT	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	918, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	859, 889
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 485
Bse1I	ACTGG	2 cut(s)	605, 873
Bse3DI	GCAATG	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	918, 1024
BseGI	GGATG	5 cut(s)	195, 494, 590, 800, 801
BseLI	CCNNNNNNNGG	2 cut(s)	186, 485
BseMI	GCAATG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	605, 873
BseRI	GAGGAG	2 cut(s)	289, 294
BseXI	GCAGC	4 cut(s)	321, 490, 980, 1025
BsgI	GTGCAG	1 cut(s)	1016
BshFI	GGCC	2 cut(s)	120, 766
BshVI	ATCGAT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	872
BsiSI	CCGG	1 cut(s)	1091
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	186, 485
BsmAI	GTCTC	3 cut(s)	230, 404, 681
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	120, 766
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	3 cut(s)	38, 654, 1065
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	1 cut(s)	865
BspANI	GGCC	2 cut(s)	120, 766
BspDI	ATCGAT	1 cut(s)	317
BspPI	GGATC	1 cut(s)	1073
BspQI	GCTCTTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	605, 873
BssECI	CCNNGG	2 cut(s)	918, 1024
BssMI	GATC	3 cut(s)	38, 654, 1065
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	918
Bst2BI	CACGAG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	484, 513, 756
Bst6I	CTCTTC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	42, 737
BstDSI	CCRYGG	1 cut(s)	918
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	5 cut(s)	195, 494, 590, 800, 801
BstKTI	GATC	3 cut(s)	41, 657, 1068
BstMAI	GTCTC	3 cut(s)	230, 404, 681
BstMBI	GATC	3 cut(s)	38, 654, 1065
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 385, 503, 934
BstSCI	CCNGG	1 cut(s)	1090
BstV1I	GCAGC	4 cut(s)	321, 490, 980, 1025
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	38, 1065
BstYI	RGATCY	2 cut(s)	38, 1065
Bsu15I	ATCGAT	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	120, 766
BsuTUI	ATCGAT	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	918
BtsCI	GGATG	5 cut(s)	195, 494, 590, 800, 801
BtsIMutI	CAGTG	3 cut(s)	612, 761, 880
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	764
ClaI	ATCGAT	1 cut(s)	317
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	295, 350, 514, 858
CviAII	CATG	5 cut(s)	175, 242, 919, 974, 1101
CviQI	GTAC	4 cut(s)	295, 350, 514, 858
DdeI	CTNAG	2 cut(s)	42, 737
DpnI	GATC	3 cut(s)	40, 656, 1067
DpnII	GATC	3 cut(s)	38, 654, 1065
DraI	TTTAAA	1 cut(s)	168
DriI	GACNNNNNGTC	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	243
Eam1105I	GACNNNNNGTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	880
Ecl136II	GAGCTC	1 cut(s)	870
Eco130I	CCWWGG	1 cut(s)	918
Eco24I	GRGCYC	1 cut(s)	872
Eco53kI	GAGCTC	1 cut(s)	870
EcoICRI	GAGCTC	1 cut(s)	870
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	918
EcoT38I	GRGCYC	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	5 cut(s)	178, 245, 922, 977, 1104
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	5 cut(s)	174, 241, 918, 973, 1100
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	310, 504, 969, 1014
FokI	GGATG	5 cut(s)	202, 501, 597, 788, 807
FriOI	GRGCYC	1 cut(s)	872
Fsp4HI	GCNGC	4 cut(s)	310, 504, 969, 1014
FspBI	CTAG	3 cut(s)	11, 579, 1002
GluI	GCNGC	4 cut(s)	310, 504, 969, 1014
GsuI	CTGGAG	1 cut(s)	856
HaeIII	GGCC	2 cut(s)	120, 766
HapII	CCGG	1 cut(s)	1091
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	5 cut(s)	178, 245, 922, 977, 1104
HindIII	AAGCTT	2 cut(s)	840, 1147
HinfI	GANTC	8 cut(s)	238, 267, 272, 412, 674, 700, 733, 809
HpaII	CCGG	1 cut(s)	1091
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	2 cut(s)	547, 752
Hpy188I	TCNGA	2 cut(s)	77, 773
Hpy188III	TCNNGA	4 cut(s)	61, 135, 524, 665
Hpy8I	GTNNAC	2 cut(s)	547, 752
HpyCH4III	ACNGT	3 cut(s)	484, 513, 756
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	231, 262, 730, 937, 997, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 385, 503, 934
HpyF3I	CTNAG	2 cut(s)	42, 737
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	178, 245, 922, 977, 1104
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	3 cut(s)	38, 654, 1065
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	781, 867, 875
LpnPI	CCDG	9 cut(s)	74, 120, 339, 450, 618, 680, 886, 1104, 1144
Lsp1109I	GCAGC	4 cut(s)	321, 490, 980, 1025
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	11, 579, 1002
MaeII	ACGT	1 cut(s)	49
MalI	GATC	3 cut(s)	40, 656, 1067
MboI	GATC	3 cut(s)	38, 654, 1065
MboII	GAAGA	3 cut(s)	260, 452, 730
MflI	RGATCY	2 cut(s)	38, 1065
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	6 cut(s)	337, 690, 785, 951, 960, 1185
MlyI	GAGTC	5 cut(s)	232, 266, 406, 683, 742
MmeI	TCCRAC	2 cut(s)	466, 615
MseI	TTAA	5 cut(s)	123, 167, 891, 1073, 1125
MspI	CCGG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	1092
Mva1269I	GAATGC	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	259, 385, 503, 934
NciI	CCSGG	1 cut(s)	1092
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	3 cut(s)	38, 654, 1065
NlaIII	CATG	5 cut(s)	178, 245, 922, 977, 1104
NmeAIII	GCCGAG	1 cut(s)	1049
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	267, 700, 809
PfoI	TCCNGGA	1 cut(s)	1090
PkrI	GCNGC	4 cut(s)	311, 505, 970, 1015
PleI	GAGTC	5 cut(s)	232, 266, 406, 682, 741
PpsI	GAGTC	5 cut(s)	232, 266, 406, 682, 741
Ppu21I	YACGTR	1 cut(s)	50
PsiI	TTATAA	2 cut(s)	1142, 1158
Psp124BI	GAGCTC	1 cut(s)	872
PspPI	GGNCC	1 cut(s)	764
PsrI	GAACNNNNNNTAC	2 cut(s)	1021, 1053
PsuI	RGATCY	2 cut(s)	38, 1065
RsaI	GTAC	4 cut(s)	296, 351, 515, 859
RsaNI	GTAC	4 cut(s)	295, 350, 514, 858
SacI	GAGCTC	1 cut(s)	872
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	5 cut(s)	123, 167, 891, 1073, 1125
SatI	GCNGC	4 cut(s)	310, 504, 969, 1014
Sau3AI	GATC	3 cut(s)	38, 654, 1065
Sau96I	GGNCC	1 cut(s)	764
SchI	GAGTC	5 cut(s)	232, 266, 406, 683, 742
ScrFI	CCNGG	1 cut(s)	1092
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	1 cut(s)	490
SmlI	CTYRAG	2 cut(s)	524, 663
SmoI	CTYRAG	2 cut(s)	524, 663
Sse9I	AATT	6 cut(s)	337, 690, 785, 951, 960, 1185
SsiI	CCGC	1 cut(s)	865
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	11, 579, 1002
SstI	GAGCTC	1 cut(s)	872
StyD4I	CCNGG	1 cut(s)	1090
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	3 cut(s)	484, 513, 756
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	270, 317
TasI	AATT	6 cut(s)	337, 690, 785, 951, 960, 1185
TatI	WGTACW	2 cut(s)	294, 513
TfiI	GAWTC	3 cut(s)	267, 700, 809
Tru1I	TTAA	5 cut(s)	123, 167, 891, 1073, 1125
Tru9I	TTAA	5 cut(s)	123, 167, 891, 1073, 1125
TscAI	CASTG	3 cut(s)	612, 761, 880
TseI	GCWGC	4 cut(s)	309, 503, 968, 1013
TspDTI	ATGAA	2 cut(s)	731, 1089
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	3 cut(s)	612, 761, 880
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	3 cut(s)	11, 579, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.